Wall clock time and date at job start Wed Apr 1 2020 03:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38626 * 120.75695 * 2 1 4 4 C 1.38556 * 119.35239 * 179.97438 * 3 2 1 5 5 C 1.50702 * 119.55052 * 179.97438 * 4 3 2 6 6 N 1.31531 * 120.90318 * 359.97435 * 4 3 2 7 7 C 1.32714 * 121.63956 * 0.02722 * 6 4 3 8 8 C 1.48171 * 119.71737 * 179.97438 * 7 6 4 9 9 O 1.21519 * 120.00105 * 179.97438 * 8 7 6 10 10 N 1.34777 * 120.00545 * 359.97438 * 8 7 6 11 11 C 1.47100 * 125.62690 * 359.97438 * 10 8 7 12 12 C 1.54455 * 107.29474 * 181.00887 * 11 10 8 13 13 C 1.54647 * 102.90483 * 21.48911 * 12 11 10 14 14 C 1.47570 * 125.63795 * 180.02562 * 10 8 7 15 15 C 1.52361 * 110.53653 * 207.65302 * 13 12 11 16 16 N 1.47332 * 108.39942 * 186.24728 * 15 13 12 17 17 C 1.36935 * 121.08095 * 229.18070 * 16 15 13 18 18 H 1.07999 * 120.00116 * 153.75719 * 17 16 15 19 19 C 1.38810 * 119.99984 * 333.75819 * 17 16 15 20 20 N 1.31612 * 119.99839 * 344.13925 * 19 17 16 21 21 Si 1.86806 * 119.99894 * 164.14043 * 19 17 16 22 22 H 1.48495 * 109.47262 * 90.00053 * 21 19 17 23 23 H 1.48499 * 109.46603 * 209.99889 * 21 19 17 24 24 H 1.48501 * 109.47101 * 329.99599 * 21 19 17 25 25 C 1.47169 * 117.84218 * 49.19846 * 16 15 13 26 26 C 1.53283 * 108.57029 * 308.78041 * 25 16 15 27 27 O 1.41881 * 110.77613 * 83.62604 * 13 12 11 28 28 C 1.38590 * 120.75408 * 180.26815 * 2 1 3 29 29 H 1.09003 * 109.46989 * 90.00593 * 1 2 3 30 30 H 1.09000 * 109.47173 * 210.00261 * 1 2 3 31 31 H 1.08995 * 109.47510 * 330.00867 * 1 2 3 32 32 H 1.07994 * 120.32256 * 359.97017 * 3 2 1 33 33 H 1.08997 * 109.46896 * 269.98066 * 5 4 3 34 34 H 1.09009 * 109.46782 * 29.97661 * 5 4 3 35 35 H 1.08998 * 109.47380 * 149.97536 * 5 4 3 36 36 H 1.08995 * 109.88087 * 300.44283 * 11 10 8 37 37 H 1.09004 * 109.87377 * 61.58617 * 11 10 8 38 38 H 1.09004 * 110.73217 * 139.82832 * 12 11 10 39 39 H 1.09004 * 110.73913 * 262.95979 * 12 11 10 40 40 H 1.08997 * 110.37768 * 275.50430 * 14 10 8 41 41 H 1.09003 * 110.37150 * 37.73543 * 14 10 8 42 42 H 1.09000 * 109.68253 * 305.97626 * 15 13 12 43 43 H 1.09006 * 109.68215 * 66.48351 * 15 13 12 44 44 H 0.97008 * 119.99960 * 180.02562 * 20 19 17 45 45 H 1.09003 * 109.62233 * 68.50410 * 25 16 15 46 46 H 1.09003 * 109.62216 * 188.87027 * 25 16 15 47 47 H 1.08995 * 109.51288 * 172.90918 * 26 25 16 48 48 H 1.09002 * 109.50861 * 293.05740 * 26 25 16 49 49 H 1.08006 * 120.47566 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2159 1.1913 0.0000 4 6 3.6011 1.1573 0.0005 5 6 4.3762 2.4497 0.0000 6 7 4.2487 0.0125 0.0016 7 6 3.6081 -1.1498 0.0016 8 6 4.3806 -2.4142 0.0022 9 8 3.7993 -3.4813 0.0026 10 7 5.7279 -2.3809 0.0022 11 6 6.5550 -1.1645 0.0011 12 6 8.0325 -1.6138 -0.0244 13 6 7.9467 -3.0512 -0.5884 14 6 6.6171 -3.5586 0.0022 15 6 9.1117 -3.8936 -0.0841 16 7 9.0696 -5.2000 -0.7642 17 6 9.1613 -6.3686 -0.0564 18 1 8.7241 -7.2742 -0.4503 19 6 9.8162 -6.3894 1.1673 20 7 10.6083 -5.3947 1.5067 21 14 9.5731 -7.8292 2.3324 22 1 10.5920 -8.8719 2.0502 23 1 9.7186 -7.3615 3.7343 24 1 8.2153 -8.3987 2.1390 25 6 8.9262 -5.2081 -2.2288 26 6 7.7341 -4.3220 -2.6075 27 8 7.8951 -3.0333 -2.0062 28 6 2.2157 -1.1910 -0.0056 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5137 32 1 1.6937 2.1365 -0.0005 33 1 4.5638 2.7604 -1.0278 34 1 3.7994 3.2195 0.5127 35 1 5.3260 2.3040 0.5146 36 1 6.3339 -0.5667 -0.8832 37 1 6.3599 -0.5829 0.9022 38 1 8.6188 -0.9749 -0.6849 39 1 8.4528 -1.6156 0.9813 40 1 6.7676 -3.9206 1.0192 41 1 6.2008 -4.3484 -0.6232 42 1 10.0526 -3.3921 -0.3107 43 1 9.0223 -4.0368 0.9928 44 1 11.0663 -5.4094 2.3617 45 1 9.8340 -4.8161 -2.6877 46 1 8.7524 -6.2273 -2.5740 47 1 7.6897 -4.2152 -3.6913 48 1 6.8122 -4.7790 -2.2479 49 1 1.6959 -2.1377 -0.0104 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972437287.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:53 Heat of formation + Delta-G solvation = -26.578057 kcal Electronic energy + Delta-G solvation = -31422.871693 eV Core-core repulsion = 27350.183880 eV Total energy + Delta-G solvation = -4072.687813 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.01759 -41.14918 -39.77508 -37.62735 -36.29546 -35.21862 -33.93082 -33.29527 -32.88943 -30.46532 -29.42016 -29.01743 -28.37660 -27.75586 -25.59966 -24.98088 -23.99961 -22.69830 -22.11255 -20.85104 -20.37786 -18.99747 -18.59908 -17.83235 -17.36230 -17.07568 -16.85337 -16.71991 -16.48892 -16.12905 -15.75984 -15.55526 -15.21919 -15.06351 -14.86345 -14.72196 -14.54626 -14.12216 -14.00320 -13.78388 -13.69160 -13.42728 -13.35461 -13.04144 -13.01418 -12.99378 -12.84453 -12.71710 -12.55836 -12.49500 -12.27753 -12.18183 -12.16973 -11.82384 -11.47476 -11.18539 -10.81066 -10.55091 -10.50737 -10.43103 -10.08140 -9.67894 -8.74161 -7.92383 -5.37805 -0.41113 0.18701 1.42724 1.45343 1.54386 1.59300 1.77072 2.45192 2.71617 2.76288 2.93648 3.22148 3.36891 3.55301 3.60896 3.66559 3.74843 3.97745 4.01050 4.03549 4.18227 4.27165 4.31113 4.33927 4.47918 4.52377 4.56348 4.64585 4.66468 4.72403 4.73073 4.78083 4.87537 4.88622 4.89377 4.98685 5.01710 5.06238 5.09889 5.14822 5.21128 5.25419 5.28450 5.30247 5.49469 5.59170 5.68447 6.26715 6.31126 6.38635 6.68823 6.98665 7.05611 7.72891 8.27337 9.13931 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015949 B = 0.002969 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.124731 B = 9429.659699 C = 9873.117889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.045 4.045 3 C -0.140 4.140 4 C 0.117 3.883 5 C -0.100 4.100 6 N -0.473 5.473 7 C 0.070 3.930 8 C 0.569 3.431 9 O -0.582 6.582 10 N -0.593 5.593 11 C 0.136 3.864 12 C -0.115 4.115 13 C 0.093 3.907 14 C 0.103 3.897 15 C 0.176 3.824 16 N -0.614 5.614 17 C -0.263 4.263 18 H 0.066 0.934 19 C -0.044 4.044 20 N -0.930 5.930 21 Si 0.962 3.038 22 H -0.282 1.282 23 H -0.289 1.289 24 H -0.277 1.277 25 C 0.108 3.892 26 C 0.051 3.949 27 O -0.373 6.373 28 C -0.134 4.134 29 H 0.090 0.910 30 H 0.072 0.928 31 H 0.097 0.903 32 H 0.179 0.821 33 H 0.090 0.910 34 H 0.103 0.897 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.107 0.893 39 H 0.095 0.905 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.014 0.986 43 H 0.070 0.930 44 H 0.253 0.747 45 H 0.026 0.974 46 H 0.069 0.931 47 H 0.120 0.880 48 H 0.035 0.965 49 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.393 20.236 -3.811 26.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.053 4.053 3 C -0.160 4.160 4 C -0.023 4.023 5 C -0.157 4.157 6 N -0.187 5.187 7 C -0.066 4.066 8 C 0.358 3.642 9 O -0.463 6.463 10 N -0.324 5.324 11 C 0.015 3.985 12 C -0.153 4.153 13 C 0.051 3.949 14 C -0.020 4.020 15 C 0.050 3.950 16 N -0.339 5.339 17 C -0.393 4.393 18 H 0.084 0.916 19 C -0.240 4.240 20 N -0.576 5.576 21 Si 0.790 3.210 22 H -0.208 1.208 23 H -0.215 1.215 24 H -0.202 1.202 25 C -0.018 4.018 26 C -0.027 4.027 27 O -0.292 6.292 28 C -0.156 4.156 29 H 0.109 0.891 30 H 0.091 0.909 31 H 0.116 0.884 32 H 0.197 0.803 33 H 0.109 0.891 34 H 0.122 0.878 35 H 0.093 0.907 36 H 0.101 0.899 37 H 0.104 0.896 38 H 0.126 0.874 39 H 0.114 0.886 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.032 0.968 43 H 0.088 0.912 44 H 0.062 0.938 45 H 0.044 0.956 46 H 0.088 0.912 47 H 0.138 0.862 48 H 0.054 0.946 49 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -16.735 19.805 -3.773 26.202 hybrid contribution -0.414 -1.883 0.830 2.099 sum -17.149 17.921 -2.943 24.978 Atomic orbital electron populations 1.20918 0.87133 1.04732 1.04185 1.20713 0.98798 0.91575 0.94228 1.22515 0.94312 1.00027 0.99119 1.22053 0.92497 0.94012 0.93780 1.20841 1.00265 0.90320 1.04320 1.67603 1.41078 0.97760 1.12220 1.20654 0.91870 0.91251 1.02848 1.18180 0.80916 0.88440 0.76666 1.90734 1.69928 1.32047 1.53547 1.48495 1.04586 1.09546 1.69739 1.22128 0.87679 0.85286 1.03427 1.22767 0.96837 0.93210 1.02535 1.22556 0.93298 0.97284 0.81798 1.22470 0.90538 0.88487 1.00518 1.20928 0.92403 0.84148 0.97566 1.44378 1.85866 1.02322 1.01321 1.19435 1.28749 0.89118 1.01995 0.91623 1.25695 0.96676 1.00288 1.01330 1.70126 1.30554 1.34221 1.22689 0.85359 0.77933 0.79347 0.78344 1.20826 1.21518 1.20189 1.21733 0.96132 0.99079 0.84852 1.23120 0.96984 0.84008 0.98545 1.87631 1.93805 1.29336 1.18392 1.22050 0.93100 1.00686 0.99738 0.89113 0.90873 0.88395 0.80349 0.89134 0.87825 0.90656 0.89906 0.89596 0.87418 0.88610 0.92303 0.92272 0.96840 0.91191 0.93812 0.95569 0.91236 0.86210 0.94634 0.84649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.04 10.06 71.24 0.72 -0.33 16 2 C -0.05 -0.75 5.91 -19.69 -0.12 -0.87 16 3 C -0.14 -1.88 9.45 22.44 0.21 -1.67 16 4 C 0.12 2.06 6.78 42.68 0.29 2.34 16 5 C -0.10 -1.01 10.17 71.24 0.72 -0.29 16 6 N -0.47 -12.01 6.76 -173.08 -1.17 -13.18 16 7 C 0.07 2.12 6.72 41.91 0.28 2.41 16 8 C 0.57 21.73 7.84 86.88 0.68 22.41 16 9 O -0.58 -25.95 16.59 -3.78 -0.06 -26.02 16 10 N -0.59 -22.05 3.33 -815.64 -2.72 -24.77 16 11 C 0.14 4.09 5.41 86.76 0.47 4.56 16 12 C -0.12 -3.64 6.13 31.65 0.19 -3.44 16 13 C 0.09 3.71 0.84 -10.08 -0.01 3.70 16 14 C 0.10 4.34 5.84 86.54 0.51 4.85 16 15 C 0.18 8.53 4.08 86.01 0.35 8.88 16 16 N -0.61 -31.58 2.98 -698.84 -2.08 -33.66 16 17 C -0.26 -14.71 9.66 84.03 0.81 -13.90 16 18 H 0.07 3.61 7.88 -2.91 -0.02 3.59 16 19 C -0.04 -2.47 4.98 84.86 0.42 -2.05 16 20 N -0.93 -54.30 11.11 21.65 0.24 -54.06 16 21 Si 0.96 45.64 29.58 68.60 2.03 47.67 16 22 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 23 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 24 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 25 C 0.11 4.62 6.71 86.35 0.58 5.20 16 26 C 0.05 1.91 6.78 72.08 0.49 2.40 16 27 O -0.37 -14.73 10.28 -148.95 -1.53 -16.26 16 28 C -0.13 -3.37 9.34 22.61 0.21 -3.16 16 29 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.07 0.72 8.10 -2.39 -0.02 0.70 16 31 H 0.10 0.45 8.10 -2.39 -0.02 0.43 16 32 H 0.18 0.89 8.06 -2.91 -0.02 0.86 16 33 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.10 0.46 8.08 -2.38 -0.02 0.44 16 35 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.08 2.38 7.42 -2.39 -0.02 2.37 16 37 H 0.09 2.34 7.53 -2.39 -0.02 2.32 16 38 H 0.11 3.00 8.14 -2.38 -0.02 2.98 16 39 H 0.10 2.91 8.01 -2.39 -0.02 2.89 16 40 H 0.06 2.70 7.82 -2.39 -0.02 2.68 16 41 H 0.06 2.76 6.00 -2.39 -0.01 2.75 16 42 H 0.01 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.07 3.77 5.95 -2.38 -0.01 3.75 16 44 H 0.25 14.25 8.31 -92.70 -0.77 13.48 16 45 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 46 H 0.07 2.84 7.96 -2.39 -0.02 2.82 16 47 H 0.12 3.60 8.14 -2.39 -0.02 3.58 16 48 H 0.04 1.43 6.25 -2.39 -0.01 1.41 16 49 H 0.14 3.55 7.64 -2.91 -0.02 3.53 16 Total: -1.00 -74.55 388.75 2.47 -72.08 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: 0.95 Total: 17.15 kcal Atomic # 6 Polarization: 24.22 SS G_CDS: 6.81 Total: 31.04 kcal Atomic # 7 Polarization: -119.93 SS G_CDS: -5.73 Total: -125.66 kcal Atomic # 8 Polarization: -40.68 SS G_CDS: -1.59 Total: -42.27 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -74.55 2.47 -72.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972437287.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.503 kcal (2) G-P(sol) polarization free energy of solvation -74.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds