Wall clock time and date at job start Wed Apr 1 2020 04:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37992 * 120.82350 * 2 1 4 4 C 1.39133 * 119.26582 * 180.02562 * 3 2 1 5 5 O 1.35493 * 119.52486 * 180.02562 * 4 3 2 6 6 N 1.32435 * 120.94635 * 359.97438 * 4 3 2 7 7 C 1.31638 * 121.79968 * 359.74501 * 6 4 3 8 8 C 1.39558 * 120.62823 * 0.54003 * 7 6 4 9 9 C 1.47613 * 120.49911 * 179.72179 * 8 7 6 10 10 O 1.21582 * 119.99833 * 173.86653 * 9 8 7 11 11 N 1.34774 * 120.00361 * 353.86364 * 9 8 7 12 12 C 1.46498 * 120.00373 * 179.97438 * 11 9 8 13 13 H 1.09005 * 109.73336 * 35.65960 * 12 11 9 14 14 C 1.53323 * 109.73884 * 275.00574 * 12 11 9 15 15 C 1.52596 * 108.40652 * 176.17665 * 14 12 11 16 16 C 1.53001 * 111.05136 * 62.35529 * 15 14 12 17 17 H 1.09004 * 112.08271 * 73.32766 * 16 15 14 18 18 C 1.55351 * 106.97699 * 196.91241 * 16 15 14 19 19 N 1.47174 * 106.96293 * 91.81426 * 18 16 15 20 20 C 1.36942 * 125.65198 * 180.98190 * 19 18 16 21 21 H 1.07990 * 119.99861 * 179.97438 * 20 19 18 22 22 C 1.38811 * 119.99403 * 359.97438 * 20 19 18 23 23 N 1.31618 * 120.00377 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99728 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47183 * 359.97438 * 24 22 20 26 26 H 1.48493 * 109.47097 * 119.99932 * 24 22 20 27 27 H 1.48501 * 109.46912 * 240.00119 * 24 22 20 28 28 C 1.47821 * 108.70213 * 0.96518 * 19 18 16 29 29 C 1.53904 * 104.06059 * 23.34673 * 28 19 18 30 30 H 1.09004 * 108.64803 * 77.07387 * 29 28 19 31 31 C 1.50739 * 113.02251 * 198.52607 * 29 28 19 32 32 H 1.09003 * 109.47117 * 263.68606 * 1 2 3 33 33 H 1.09000 * 109.46566 * 23.68217 * 1 2 3 34 34 H 1.08998 * 109.47097 * 143.68242 * 1 2 3 35 35 H 1.07993 * 120.36894 * 0.04547 * 3 2 1 36 36 H 0.96703 * 114.00425 * 90.00331 * 5 4 3 37 37 H 1.08002 * 119.68713 * 180.28859 * 7 6 4 38 38 H 0.97002 * 120.00097 * 0.02562 * 11 9 8 39 39 H 1.08999 * 109.68388 * 56.44781 * 14 12 11 40 40 H 1.08999 * 109.67620 * 295.90212 * 14 12 11 41 41 H 1.08991 * 109.16105 * 301.94635 * 15 14 12 42 42 H 1.09003 * 109.16104 * 182.75625 * 15 14 12 43 43 H 1.09000 * 109.96510 * 211.19024 * 18 16 15 44 44 H 1.08994 * 109.96363 * 332.40558 * 18 16 15 45 45 H 0.96998 * 119.99841 * 179.97438 * 23 22 20 46 46 H 1.08999 * 110.50721 * 264.70442 * 28 19 18 47 47 H 1.09000 * 110.51395 * 141.99360 * 28 19 18 48 48 H 1.09001 * 109.02353 * 185.71301 * 31 29 28 49 49 H 1.08997 * 109.02874 * 304.54423 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.1850 0.0000 4 6 3.6049 1.1472 -0.0005 5 8 4.3044 2.3076 0.0000 6 7 4.2548 -0.0067 -0.0005 7 6 3.6204 -1.1602 0.0049 8 6 2.2256 -1.2044 -0.0003 9 6 1.5171 -2.4995 -0.0003 10 8 0.3065 -2.5301 0.1076 11 7 2.2122 -3.6479 -0.1200 12 6 1.5092 -4.9332 -0.1195 13 1 0.5510 -4.8288 -0.6286 14 6 1.2807 -5.3978 1.3237 15 6 0.4649 -6.6870 1.2914 16 6 1.2259 -7.8010 0.5697 17 1 2.0483 -8.1906 1.1697 18 6 0.1876 -8.8981 0.2067 19 7 -0.3068 -8.5909 -1.1450 20 6 -1.2523 -9.3059 -1.8307 21 1 -1.5489 -8.9970 -2.8221 22 6 -1.8294 -10.4275 -1.2513 23 7 -1.4675 -10.8042 -0.0432 24 14 -3.1196 -11.4025 -2.1864 25 1 -3.3481 -10.7761 -3.5132 26 1 -2.6471 -12.7980 -2.3721 27 1 -4.3896 -11.4081 -1.4168 28 6 0.3859 -7.3824 -1.6398 29 6 1.6901 -7.3385 -0.8239 30 1 2.3825 -8.0738 -1.2337 31 6 2.3446 -5.9807 -0.8312 32 1 -0.3633 -0.1130 1.0215 33 1 -0.3632 0.9412 -0.4128 34 1 -0.3633 -0.8280 -0.6086 35 1 1.6937 2.1313 0.0007 36 1 4.5079 2.6439 0.8835 37 1 4.1848 -2.0810 0.0095 38 1 3.1781 -3.6236 -0.2058 39 1 0.7346 -4.6316 1.8740 40 1 2.2405 -5.5829 1.8060 41 1 -0.4758 -6.5021 0.7728 42 1 0.2532 -7.0021 2.3132 43 1 0.6638 -9.8785 0.2149 44 1 -0.6377 -8.8795 0.9184 45 1 -1.8710 -11.5878 0.3617 46 1 -0.2144 -6.4929 -1.4486 47 1 0.6039 -7.4758 -2.7037 48 1 3.3070 -6.0475 -0.3238 49 1 2.5093 -5.6711 -1.8632 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980167878.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:03 Heat of formation + Delta-G solvation = -46.649607 kcal Electronic energy + Delta-G solvation = -30396.067606 eV Core-core repulsion = 26322.509425 eV Total energy + Delta-G solvation = -4073.558180 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.01977 -41.12065 -40.02205 -38.05374 -37.07784 -35.25800 -34.64522 -33.41221 -32.46623 -31.54377 -30.35418 -28.95297 -27.63716 -26.73135 -25.33877 -23.73857 -23.42359 -22.78224 -21.94921 -21.52794 -19.86450 -19.43322 -19.01209 -18.45883 -18.20651 -17.19647 -16.88001 -16.77120 -16.40930 -16.09918 -15.69698 -15.48569 -15.22313 -15.05370 -14.87653 -14.37705 -14.15527 -13.99773 -13.99738 -13.83469 -13.66473 -13.60265 -13.33368 -13.14305 -13.10187 -12.87654 -12.73050 -12.64868 -12.45817 -12.15641 -12.10571 -11.78610 -11.73208 -11.30805 -11.12307 -10.97397 -10.86147 -10.69935 -10.67615 -10.41650 -10.17083 -9.89483 -8.85719 -7.84211 -5.18750 -0.53228 0.07738 1.43678 1.44910 1.55133 1.72916 2.05598 2.48580 2.49100 2.71254 3.33187 3.45208 3.58884 3.63155 3.67063 3.74462 3.77844 3.92319 4.07022 4.17648 4.19066 4.24393 4.38146 4.43643 4.56577 4.58539 4.63592 4.66016 4.68275 4.74124 4.76450 4.82252 4.94300 5.03483 5.05538 5.13674 5.18226 5.27174 5.30751 5.36491 5.42330 5.45052 5.51368 5.55262 5.58789 5.77276 5.83264 6.21351 6.51226 6.55228 6.77374 7.12136 7.21593 7.79793 8.44817 9.25988 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.024928 B = 0.002132 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.948927 B =13132.723504 C =13554.228888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.025 3.975 3 C -0.194 4.194 4 C 0.334 3.666 5 O -0.489 6.489 6 N -0.533 5.533 7 C 0.173 3.827 8 C -0.215 4.215 9 C 0.563 3.437 10 O -0.563 6.563 11 N -0.702 5.702 12 C 0.152 3.848 13 H 0.060 0.940 14 C -0.111 4.111 15 C -0.096 4.096 16 C -0.096 4.096 17 H 0.100 0.900 18 C 0.190 3.810 19 N -0.629 5.629 20 C -0.239 4.239 21 H 0.079 0.921 22 C -0.070 4.070 23 N -0.951 5.951 24 Si 0.977 3.023 25 H -0.267 1.267 26 H -0.290 1.290 27 H -0.294 1.294 28 C 0.132 3.868 29 C -0.076 4.076 30 H 0.075 0.925 31 C -0.099 4.099 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.170 0.830 36 H 0.426 0.574 37 H 0.193 0.807 38 H 0.415 0.585 39 H 0.052 0.948 40 H 0.091 0.909 41 H 0.030 0.970 42 H 0.059 0.941 43 H 0.002 0.998 44 H 0.007 0.993 45 H 0.246 0.754 46 H 0.016 0.984 47 H 0.038 0.962 48 H 0.101 0.899 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.769 25.354 3.579 29.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.017 3.983 3 C -0.214 4.214 4 C 0.157 3.843 5 O -0.300 6.300 6 N -0.252 5.252 7 C 0.014 3.986 8 C -0.221 4.221 9 C 0.350 3.650 10 O -0.443 6.443 11 N -0.354 5.354 12 C 0.048 3.952 13 H 0.079 0.921 14 C -0.149 4.149 15 C -0.135 4.135 16 C -0.115 4.115 17 H 0.118 0.882 18 C 0.065 3.935 19 N -0.355 5.355 20 C -0.368 4.368 21 H 0.096 0.904 22 C -0.262 4.262 23 N -0.601 5.601 24 Si 0.805 3.195 25 H -0.191 1.191 26 H -0.217 1.217 27 H -0.221 1.221 28 C 0.008 3.992 29 C -0.096 4.096 30 H 0.093 0.907 31 C -0.137 4.137 32 H 0.100 0.900 33 H 0.105 0.895 34 H 0.096 0.904 35 H 0.188 0.812 36 H 0.289 0.711 37 H 0.210 0.790 38 H 0.253 0.747 39 H 0.071 0.929 40 H 0.109 0.891 41 H 0.049 0.951 42 H 0.077 0.923 43 H 0.020 0.980 44 H 0.025 0.975 45 H 0.055 0.945 46 H 0.034 0.966 47 H 0.056 0.944 48 H 0.120 0.880 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 14.675 25.210 3.059 29.330 hybrid contribution -1.676 -1.017 0.109 1.964 sum 12.999 24.192 3.169 27.645 Atomic orbital electron populations 1.21064 0.88720 1.04021 1.03891 1.20562 0.97897 0.91161 0.88647 1.22169 0.93471 1.00045 1.05757 1.19566 0.87548 0.85468 0.91749 1.84667 1.75707 1.33418 1.36203 1.67245 1.42528 0.98862 1.16608 1.23090 0.89745 0.96028 0.89719 1.20852 0.95679 0.93805 1.11753 1.18149 0.86649 0.84106 0.76062 1.90780 1.15185 1.87503 1.50831 1.45779 1.11364 1.04654 1.73601 1.20603 0.96128 0.82090 0.96404 0.92146 1.21777 1.01089 0.95749 0.96319 1.21295 0.97921 0.94564 0.99674 1.22366 0.97543 0.95519 0.96093 0.88184 1.21223 0.93121 0.93739 0.85390 1.44910 1.45765 1.29141 1.15694 1.19492 1.13347 1.05527 0.98463 0.90353 1.25641 1.02701 0.99979 0.97914 1.70197 1.46706 1.27326 1.15830 0.85027 0.78277 0.78176 0.77988 1.19113 1.21732 1.22078 1.21703 0.92507 0.88441 0.96586 1.21256 0.95874 0.97365 0.95075 0.90663 1.20857 0.99439 0.91535 1.01861 0.90024 0.89472 0.90361 0.81242 0.71120 0.79048 0.74686 0.92888 0.89095 0.95065 0.92251 0.98002 0.97479 0.94515 0.96614 0.94351 0.88021 0.89987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.12 8.84 71.24 0.63 -1.49 16 2 C 0.03 0.44 5.95 -19.43 -0.12 0.32 16 3 C -0.19 -2.63 9.70 22.43 0.22 -2.41 16 4 C 0.33 5.07 7.74 84.82 0.66 5.72 16 5 O -0.49 -5.68 13.55 -87.94 -1.19 -6.87 16 6 N -0.53 -9.12 10.37 -307.81 -3.19 -12.31 16 7 C 0.17 2.48 10.69 85.04 0.91 3.39 16 8 C -0.22 -3.87 5.89 -20.00 -0.12 -3.98 16 9 C 0.56 12.49 7.69 86.72 0.67 13.16 16 10 O -0.56 -17.03 13.17 -3.98 -0.05 -17.09 16 11 N -0.70 -12.30 5.05 -447.12 -2.26 -14.56 16 12 C 0.15 3.57 2.27 44.68 0.10 3.67 16 13 H 0.06 1.90 6.34 -2.38 -0.02 1.88 16 14 C -0.11 -2.74 5.53 30.57 0.17 -2.57 16 15 C -0.10 -3.16 4.67 30.46 0.14 -3.02 16 16 C -0.10 -3.34 3.57 -9.65 -0.03 -3.38 16 17 H 0.10 2.99 8.14 -2.38 -0.02 2.97 16 18 C 0.19 9.50 4.70 87.06 0.41 9.91 16 19 N -0.63 -33.12 3.41 -690.53 -2.35 -35.48 16 20 C -0.24 -13.87 10.28 84.03 0.86 -13.00 16 21 H 0.08 4.38 7.83 -2.92 -0.02 4.36 16 22 C -0.07 -4.09 5.49 84.86 0.47 -3.63 16 23 N -0.95 -58.78 10.32 21.65 0.22 -58.56 16 24 Si 0.98 47.23 29.55 68.60 2.03 49.26 16 25 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 26 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 27 H -0.29 -14.21 7.11 99.48 0.71 -13.51 16 28 C 0.13 5.44 6.21 86.43 0.54 5.97 16 29 C -0.08 -2.36 2.81 -10.89 -0.03 -2.39 16 30 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 31 C -0.10 -2.05 4.77 29.44 0.14 -1.91 16 32 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.09 1.07 8.06 -2.39 -0.02 1.06 16 34 H 0.08 1.83 5.95 -2.39 -0.01 1.81 16 35 H 0.17 1.42 8.06 -2.91 -0.02 1.40 16 36 H 0.43 0.49 9.06 -74.06 -0.67 -0.18 16 37 H 0.19 1.38 6.46 -2.91 -0.02 1.36 16 38 H 0.41 4.03 6.70 -92.71 -0.62 3.41 16 39 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.03 1.25 7.21 -2.39 -0.02 1.23 16 42 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.00 0.10 7.50 -2.39 -0.02 0.08 16 44 H 0.01 0.40 7.01 -2.39 -0.02 0.38 16 45 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 46 H 0.02 0.68 6.25 -2.39 -0.01 0.66 16 47 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 48 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 49 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -80.28 381.53 -1.49 -81.77 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -0.30 Total: 9.48 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: 5.61 Total: 4.36 kcal Atomic # 7 Polarization: -113.32 SS G_CDS: -7.58 Total: -120.91 kcal Atomic # 8 Polarization: -22.72 SS G_CDS: -1.24 Total: -23.96 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 2.03 Total: 49.26 kcal Total: -80.28 -1.49 -81.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980167878.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.119 kcal (2) G-P(sol) polarization free energy of solvation -80.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds