Wall clock time and date at job start Wed Apr 1 2020 04:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37988 * 120.82521 * 2 1 4 4 C 1.39123 * 119.26586 * 180.02562 * 3 2 1 5 5 O 1.35507 * 119.52303 * 179.97438 * 4 3 2 6 6 N 1.32429 * 120.95347 * 359.97438 * 4 3 2 7 7 C 1.31639 * 121.79706 * 0.02562 * 6 4 3 8 8 C 1.39564 * 120.62870 * 359.72572 * 7 6 4 9 9 C 1.47611 * 120.50583 * 180.30308 * 8 7 6 10 10 O 1.21571 * 120.00651 * 186.14144 * 9 8 7 11 11 N 1.34782 * 119.99615 * 6.14382 * 9 8 7 12 12 C 1.46494 * 119.99888 * 179.97438 * 11 9 8 13 13 H 1.08994 * 109.63512 * 34.99860 * 12 11 9 14 14 C 1.53299 * 109.63115 * 274.60604 * 12 11 9 15 15 C 1.53009 * 107.50253 * 175.53735 * 14 12 11 16 16 C 1.50893 * 111.12120 * 60.34899 * 15 14 12 17 17 H 1.09003 * 109.03406 * 185.06762 * 16 15 14 18 18 C 1.53373 * 113.07669 * 64.72518 * 16 15 14 19 19 N 1.47430 * 106.51605 * 212.46898 * 18 16 15 20 20 C 1.36933 * 125.73101 * 179.29557 * 19 18 16 21 21 H 1.07998 * 120.00563 * 180.02562 * 20 19 18 22 22 C 1.38816 * 119.99961 * 0.02562 * 20 19 18 23 23 N 1.31622 * 119.99814 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00254 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47041 * 90.00229 * 24 22 20 26 26 H 1.48500 * 109.47368 * 210.00086 * 24 22 20 27 27 H 1.48497 * 109.47281 * 330.00336 * 24 22 20 28 28 C 1.49589 * 108.78935 * 359.41525 * 19 18 16 29 29 C 1.54061 * 113.56698 * 306.76618 * 16 15 14 30 30 H 1.09007 * 112.60496 * 281.75334 * 29 16 15 31 31 C 1.52621 * 109.63282 * 155.39577 * 12 11 9 32 32 H 1.08993 * 109.47329 * 96.32130 * 1 2 3 33 33 H 1.09001 * 109.46837 * 336.32099 * 1 2 3 34 34 H 1.09005 * 109.46991 * 216.32181 * 1 2 3 35 35 H 1.08007 * 120.36440 * 0.02562 * 3 2 1 36 36 H 0.96702 * 113.99876 * 90.00128 * 5 4 3 37 37 H 1.08005 * 119.68696 * 180.02562 * 7 6 4 38 38 H 0.96998 * 119.99991 * 359.97438 * 11 9 8 39 39 H 1.09006 * 109.71710 * 296.18351 * 14 12 11 40 40 H 1.08997 * 109.71433 * 56.82331 * 14 12 11 41 41 H 1.08997 * 110.17988 * 299.35576 * 15 14 12 42 42 H 1.09003 * 108.38552 * 180.17161 * 15 14 12 43 43 H 1.08997 * 110.04941 * 331.73071 * 18 16 15 44 44 H 1.08997 * 110.04943 * 93.20776 * 18 16 15 45 45 H 0.96996 * 120.00214 * 179.97438 * 23 22 20 46 46 H 1.09003 * 110.50219 * 266.36509 * 28 19 18 47 47 H 1.09000 * 111.26238 * 143.24488 * 28 19 18 48 48 H 1.09003 * 109.18470 * 302.28736 * 31 12 11 49 49 H 1.09005 * 109.18748 * 61.53881 * 31 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.1850 0.0000 4 6 3.6048 1.1471 -0.0005 5 8 4.3044 2.3076 -0.0011 6 7 4.2548 -0.0067 -0.0005 7 6 3.6205 -1.1602 -0.0005 8 6 2.2255 -1.2045 0.0052 9 6 1.5170 -2.4995 0.0119 10 8 0.3065 -2.5307 -0.0957 11 7 2.2122 -3.6473 0.1375 12 6 1.5091 -4.9324 0.1447 13 1 0.6521 -4.8848 -0.5271 14 6 1.0319 -5.2504 1.5664 15 6 0.2108 -6.5398 1.4986 16 6 1.0427 -7.6875 0.9814 17 1 0.4047 -8.5632 0.8615 18 6 2.1980 -8.0626 1.9178 19 7 3.2978 -8.5362 1.0578 20 6 4.5265 -8.9580 1.4905 21 1 5.2670 -9.2868 0.7765 22 6 4.8205 -8.9629 2.8472 23 7 3.9179 -8.5626 3.7176 24 14 6.4969 -9.5376 3.4376 25 1 7.4254 -8.3800 3.4939 26 1 6.3673 -10.1344 4.7912 27 1 7.0309 -10.5551 2.4971 28 6 2.8527 -8.4782 -0.3692 29 6 1.7390 -7.3882 -0.3599 30 1 1.0621 -7.4686 -1.2105 31 6 2.4571 -6.0382 -0.3111 32 1 -0.3633 -0.1131 -1.0213 33 1 -0.3633 0.9412 0.4127 34 1 -0.3633 -0.8280 0.6087 35 1 1.6936 2.1313 0.0004 36 1 4.5078 2.6446 0.8822 37 1 4.1849 -2.0810 -0.0001 38 1 3.1781 -3.6224 0.2230 39 1 1.8923 -5.3722 2.2245 40 1 0.4003 -4.4408 1.9320 41 1 -0.6514 -6.4026 0.8461 42 1 -0.1388 -6.7779 2.5032 43 1 2.5175 -7.1888 2.4856 44 1 1.8861 -8.8564 2.5966 45 1 4.1231 -8.5664 4.6656 46 1 2.4425 -9.4389 -0.6806 47 1 3.6701 -8.1814 -1.0264 48 1 2.8363 -5.7981 -1.3044 49 1 3.2936 -6.1024 0.3849 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980167885.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:08 Heat of formation + Delta-G solvation = -18.743156 kcal Electronic energy + Delta-G solvation = -30766.454410 eV Core-core repulsion = 26694.106344 eV Total energy + Delta-G solvation = -4072.348066 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.17793 -39.90658 -38.82125 -37.31760 -35.55347 -34.11236 -33.44898 -31.94017 -31.26496 -30.00567 -28.76969 -28.05236 -26.10390 -24.96339 -24.54370 -22.80693 -22.11630 -21.58011 -20.74429 -19.84914 -18.81323 -18.49366 -17.61320 -17.33148 -16.79131 -16.18934 -15.76103 -15.33656 -15.17039 -15.00701 -14.59996 -14.34086 -13.93104 -13.80761 -13.39565 -13.33216 -13.24621 -13.04446 -12.85749 -12.61279 -12.37428 -12.17625 -12.07130 -11.98072 -11.67914 -11.30223 -11.14521 -11.04745 -10.85891 -10.61461 -10.54913 -10.22175 -9.99769 -9.92957 -9.81317 -9.73880 -9.66362 -9.44353 -9.42069 -9.34447 -8.85538 -8.57321 -6.80549 -5.69604 -3.01977 0.23379 0.80937 2.59411 3.05460 3.18190 3.39470 3.45278 3.46794 3.49411 4.15989 4.32877 4.43926 4.50150 4.68006 4.85074 4.98441 5.09572 5.11990 5.28513 5.30214 5.41786 5.46200 5.49062 5.52099 5.60736 5.65002 5.71575 5.74395 5.85591 5.92510 5.96383 5.99939 6.06436 6.16249 6.31740 6.36966 6.46156 6.51810 6.59217 6.66000 6.68403 6.74240 6.86879 7.01976 7.04027 7.45022 7.48660 7.57745 7.67099 7.86671 8.13033 8.25333 9.23307 9.82321 10.50863 11.41805 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012549 B = 0.002802 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.639538 B = 9989.674727 C =11415.834360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.034 3.966 3 C -0.199 4.199 4 C 0.334 3.666 5 O -0.482 6.482 6 N -0.510 5.510 7 C 0.167 3.833 8 C -0.202 4.202 9 C 0.565 3.435 10 O -0.532 6.532 11 N -0.715 5.715 12 C 0.149 3.851 13 H 0.085 0.915 14 C -0.125 4.125 15 C -0.095 4.095 16 C -0.114 4.114 17 H 0.057 0.943 18 C 0.188 3.812 19 N -0.607 5.607 20 C -0.224 4.224 21 H 0.076 0.924 22 C -0.009 4.009 23 N -0.921 5.921 24 Si 0.908 3.092 25 H -0.290 1.290 26 H -0.292 1.292 27 H -0.282 1.282 28 C 0.133 3.867 29 C -0.091 4.091 30 H 0.074 0.926 31 C -0.115 4.115 32 H 0.084 0.916 33 H 0.064 0.936 34 H 0.103 0.897 35 H 0.147 0.853 36 H 0.405 0.595 37 H 0.166 0.834 38 H 0.399 0.601 39 H 0.077 0.923 40 H 0.057 0.943 41 H 0.055 0.945 42 H 0.061 0.939 43 H 0.049 0.951 44 H 0.038 0.962 45 H 0.251 0.749 46 H 0.021 0.979 47 H 0.042 0.958 48 H 0.056 0.944 49 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.517 17.983 -6.869 20.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.026 3.974 3 C -0.221 4.221 4 C 0.156 3.844 5 O -0.290 6.290 6 N -0.229 5.229 7 C 0.008 3.992 8 C -0.208 4.208 9 C 0.351 3.649 10 O -0.411 6.411 11 N -0.365 5.365 12 C 0.045 3.955 13 H 0.103 0.897 14 C -0.163 4.163 15 C -0.133 4.133 16 C -0.133 4.133 17 H 0.076 0.924 18 C 0.063 3.937 19 N -0.334 5.334 20 C -0.353 4.353 21 H 0.093 0.907 22 C -0.205 4.205 23 N -0.569 5.569 24 Si 0.739 3.261 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.208 1.208 28 C 0.007 3.993 29 C -0.111 4.111 30 H 0.092 0.908 31 C -0.153 4.153 32 H 0.103 0.897 33 H 0.082 0.918 34 H 0.122 0.878 35 H 0.164 0.836 36 H 0.263 0.737 37 H 0.183 0.817 38 H 0.234 0.766 39 H 0.096 0.904 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.080 0.920 43 H 0.067 0.933 44 H 0.056 0.944 45 H 0.061 0.939 46 H 0.038 0.962 47 H 0.060 0.940 48 H 0.075 0.925 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.387 17.933 -7.333 20.400 hybrid contribution 0.783 -0.221 0.932 1.237 sum -5.604 17.712 -6.401 19.649 Atomic orbital electron populations 1.21130 0.88619 1.03809 1.04393 1.20383 0.97726 0.90589 0.88717 1.21994 0.93698 0.99592 1.06772 1.19383 0.87117 0.85250 0.92628 1.84715 1.75970 1.34072 1.34200 1.67182 1.42033 0.98243 1.15460 1.22790 0.90358 0.95335 0.90704 1.20967 0.95072 0.94778 1.09964 1.17831 0.86992 0.83299 0.76772 1.90725 1.13349 1.86980 1.50029 1.46116 1.10881 1.06107 1.73407 1.21105 0.95522 0.80905 0.97945 0.89696 1.21979 1.00642 0.97376 0.96306 1.20849 0.97402 0.94006 1.01059 1.21669 0.98276 0.97046 0.96314 0.92400 1.21043 0.84078 0.98331 0.90204 1.45062 1.12278 1.76765 0.99342 1.19055 0.89099 1.35978 0.91148 0.90655 1.24761 0.97998 1.01932 0.95852 1.69960 1.32817 1.53204 1.00968 0.86171 0.83655 0.78240 0.78015 1.21722 1.21787 1.20823 1.22209 0.94197 0.94700 0.88189 1.22193 0.97089 0.94651 0.97181 0.90789 1.21731 0.99034 0.93131 1.01442 0.89746 0.91756 0.87828 0.83567 0.73673 0.81703 0.76625 0.90404 0.92377 0.92582 0.91990 0.93251 0.94354 0.93895 0.96165 0.93970 0.92523 0.89476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.14 8.85 36.01 0.32 -0.82 16 2 C 0.03 0.35 5.95 -103.95 -0.62 -0.27 16 3 C -0.20 -1.78 9.70 -39.34 -0.38 -2.16 16 4 C 0.33 3.41 7.74 -16.97 -0.13 3.27 16 5 O -0.48 -4.04 13.55 -18.21 -0.25 -4.29 16 6 N -0.51 -5.99 10.37 -12.96 -0.13 -6.12 16 7 C 0.17 1.79 10.69 -17.14 -0.18 1.60 16 8 C -0.20 -2.28 5.89 -104.82 -0.62 -2.90 16 9 C 0.56 7.26 7.69 -12.43 -0.10 7.17 16 10 O -0.53 -8.01 13.15 5.30 0.07 -7.94 16 11 N -0.72 -8.79 5.04 -54.87 -0.28 -9.06 16 12 C 0.15 2.08 2.40 -67.97 -0.16 1.91 16 13 H 0.08 1.24 7.58 -51.93 -0.39 0.85 16 14 C -0.12 -1.90 5.41 -26.57 -0.14 -2.05 16 15 C -0.09 -1.46 5.36 -27.78 -0.15 -1.61 16 16 C -0.11 -2.01 2.70 -90.93 -0.25 -2.26 16 17 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 18 C 0.19 4.31 4.36 -3.34 -0.01 4.30 16 19 N -0.61 -14.72 2.96 -167.96 -0.50 -15.22 16 20 C -0.22 -6.04 10.29 -15.06 -0.16 -6.20 16 21 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 22 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 23 N -0.92 -26.36 10.34 55.49 0.57 -25.78 16 24 Si 0.91 21.77 29.55 -169.99 -5.02 16.74 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 27 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 28 C 0.13 2.59 6.65 -0.81 -0.01 2.59 16 29 C -0.09 -1.48 3.67 -88.56 -0.32 -1.81 16 30 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 31 C -0.12 -1.74 4.29 -26.93 -0.12 -1.85 16 32 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.44 8.06 -51.93 -0.42 0.02 16 34 H 0.10 1.17 5.93 -51.93 -0.31 0.86 16 35 H 0.15 0.94 8.06 -52.48 -0.42 0.51 16 36 H 0.40 1.31 9.06 45.56 0.41 1.73 16 37 H 0.17 1.41 6.46 -52.48 -0.34 1.07 16 38 H 0.40 4.21 6.69 -40.82 -0.27 3.94 16 39 H 0.08 1.36 6.70 -51.93 -0.35 1.01 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.05 1.24 5.70 -51.93 -0.30 0.94 16 44 H 0.04 1.01 7.50 -51.93 -0.39 0.62 16 45 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 46 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.04 0.79 7.98 -51.93 -0.41 0.38 16 48 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 49 H 0.09 1.57 7.18 -51.93 -0.37 1.20 16 LS Contribution 381.60 15.07 5.75 5.75 Total: -1.00 -32.77 381.60 -9.40 -42.17 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -6.49 Total: 5.19 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: -3.12 Total: -1.44 kcal Atomic # 7 Polarization: -55.85 SS G_CDS: -0.33 Total: -56.19 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: -0.18 Total: -12.23 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.77 -9.40 -42.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980167885.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.423 kcal (2) G-P(sol) polarization free energy of solvation -32.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds