Wall clock time and date at job start Wed Apr 1 2020 04:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37988 * 120.82521 * 2 1 4 4 C 1.39123 * 119.26586 * 180.02562 * 3 2 1 5 5 O 1.35507 * 119.52303 * 179.97438 * 4 3 2 6 6 N 1.32429 * 120.95347 * 359.97438 * 4 3 2 7 7 C 1.31639 * 121.79706 * 0.02562 * 6 4 3 8 8 C 1.39564 * 120.62870 * 359.72572 * 7 6 4 9 9 C 1.47611 * 120.50583 * 180.30308 * 8 7 6 10 10 O 1.21571 * 120.00651 * 186.14144 * 9 8 7 11 11 N 1.34782 * 119.99615 * 6.14382 * 9 8 7 12 12 C 1.46494 * 119.99888 * 179.97438 * 11 9 8 13 13 H 1.08994 * 109.63512 * 34.99860 * 12 11 9 14 14 C 1.53299 * 109.63115 * 274.60604 * 12 11 9 15 15 C 1.53009 * 107.50253 * 175.53735 * 14 12 11 16 16 C 1.50893 * 111.12120 * 60.34899 * 15 14 12 17 17 H 1.09003 * 109.03406 * 185.06762 * 16 15 14 18 18 C 1.53373 * 113.07669 * 64.72518 * 16 15 14 19 19 N 1.47430 * 106.51605 * 212.46898 * 18 16 15 20 20 C 1.36933 * 125.73101 * 179.29557 * 19 18 16 21 21 H 1.07998 * 120.00563 * 180.02562 * 20 19 18 22 22 C 1.38816 * 119.99961 * 0.02562 * 20 19 18 23 23 N 1.31622 * 119.99814 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00254 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47041 * 90.00229 * 24 22 20 26 26 H 1.48500 * 109.47368 * 210.00086 * 24 22 20 27 27 H 1.48497 * 109.47281 * 330.00336 * 24 22 20 28 28 C 1.49589 * 108.78935 * 359.41525 * 19 18 16 29 29 C 1.54061 * 113.56698 * 306.76618 * 16 15 14 30 30 H 1.09007 * 112.60496 * 281.75334 * 29 16 15 31 31 C 1.52621 * 109.63282 * 155.39577 * 12 11 9 32 32 H 1.08993 * 109.47329 * 96.32130 * 1 2 3 33 33 H 1.09001 * 109.46837 * 336.32099 * 1 2 3 34 34 H 1.09005 * 109.46991 * 216.32181 * 1 2 3 35 35 H 1.08007 * 120.36440 * 0.02562 * 3 2 1 36 36 H 0.96702 * 113.99876 * 90.00128 * 5 4 3 37 37 H 1.08005 * 119.68696 * 180.02562 * 7 6 4 38 38 H 0.96998 * 119.99991 * 359.97438 * 11 9 8 39 39 H 1.09006 * 109.71710 * 296.18351 * 14 12 11 40 40 H 1.08997 * 109.71433 * 56.82331 * 14 12 11 41 41 H 1.08997 * 110.17988 * 299.35576 * 15 14 12 42 42 H 1.09003 * 108.38552 * 180.17161 * 15 14 12 43 43 H 1.08997 * 110.04941 * 331.73071 * 18 16 15 44 44 H 1.08997 * 110.04943 * 93.20776 * 18 16 15 45 45 H 0.96996 * 120.00214 * 179.97438 * 23 22 20 46 46 H 1.09003 * 110.50219 * 266.36509 * 28 19 18 47 47 H 1.09000 * 111.26238 * 143.24488 * 28 19 18 48 48 H 1.09003 * 109.18470 * 302.28736 * 31 12 11 49 49 H 1.09005 * 109.18748 * 61.53881 * 31 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.1850 0.0000 4 6 3.6048 1.1471 -0.0005 5 8 4.3044 2.3076 -0.0011 6 7 4.2548 -0.0067 -0.0005 7 6 3.6205 -1.1602 -0.0005 8 6 2.2255 -1.2045 0.0052 9 6 1.5170 -2.4995 0.0119 10 8 0.3065 -2.5307 -0.0957 11 7 2.2122 -3.6473 0.1375 12 6 1.5091 -4.9324 0.1447 13 1 0.6521 -4.8848 -0.5271 14 6 1.0319 -5.2504 1.5664 15 6 0.2108 -6.5398 1.4986 16 6 1.0427 -7.6875 0.9814 17 1 0.4047 -8.5632 0.8615 18 6 2.1980 -8.0626 1.9178 19 7 3.2978 -8.5362 1.0578 20 6 4.5265 -8.9580 1.4905 21 1 5.2670 -9.2868 0.7765 22 6 4.8205 -8.9629 2.8472 23 7 3.9179 -8.5626 3.7176 24 14 6.4969 -9.5376 3.4376 25 1 7.4254 -8.3800 3.4939 26 1 6.3673 -10.1344 4.7912 27 1 7.0309 -10.5551 2.4971 28 6 2.8527 -8.4782 -0.3692 29 6 1.7390 -7.3882 -0.3599 30 1 1.0621 -7.4686 -1.2105 31 6 2.4571 -6.0382 -0.3111 32 1 -0.3633 -0.1131 -1.0213 33 1 -0.3633 0.9412 0.4127 34 1 -0.3633 -0.8280 0.6087 35 1 1.6936 2.1313 0.0004 36 1 4.5078 2.6446 0.8822 37 1 4.1849 -2.0810 -0.0001 38 1 3.1781 -3.6224 0.2230 39 1 1.8923 -5.3722 2.2245 40 1 0.4003 -4.4408 1.9320 41 1 -0.6514 -6.4026 0.8461 42 1 -0.1388 -6.7779 2.5032 43 1 2.5175 -7.1888 2.4856 44 1 1.8861 -8.8564 2.5966 45 1 4.1231 -8.5664 4.6656 46 1 2.4425 -9.4389 -0.6806 47 1 3.6701 -8.1814 -1.0264 48 1 2.8363 -5.7981 -1.3044 49 1 3.2936 -6.1024 0.3849 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980167885.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:07 Heat of formation + Delta-G solvation = -42.759387 kcal Electronic energy + Delta-G solvation = -30767.495832 eV Core-core repulsion = 26694.106344 eV Total energy + Delta-G solvation = -4073.389488 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.02179 -41.06270 -39.99361 -38.05675 -36.87381 -35.23490 -34.64186 -33.59108 -32.34059 -31.32606 -30.20423 -28.89584 -27.62304 -26.73844 -25.43913 -23.79898 -23.48249 -22.62488 -22.03188 -21.27865 -19.80876 -19.44727 -18.83715 -18.61640 -18.17629 -16.96222 -16.88925 -16.59876 -16.45313 -16.20726 -15.90095 -15.66512 -15.29060 -14.95059 -14.75717 -14.42590 -14.06337 -13.92392 -13.85067 -13.76785 -13.58529 -13.51054 -13.35236 -13.22538 -12.90872 -12.75007 -12.72528 -12.64516 -12.56074 -12.17463 -12.05342 -11.72753 -11.64559 -11.28825 -11.10659 -10.96413 -10.91277 -10.69007 -10.60820 -10.42120 -10.16635 -9.90876 -8.80563 -7.78749 -5.11854 -0.55051 0.06015 1.46941 1.47757 1.56178 1.71031 2.07732 2.46666 2.52465 2.69279 3.39423 3.42842 3.57704 3.61527 3.62962 3.79086 3.85833 3.89751 4.04157 4.17337 4.23144 4.33467 4.37962 4.43395 4.57761 4.60004 4.62135 4.66779 4.67180 4.73771 4.78899 4.91002 5.01374 5.03807 5.08590 5.12723 5.18560 5.28145 5.30878 5.32939 5.39913 5.45951 5.55712 5.58956 5.66869 5.78570 5.93130 6.25126 6.48130 6.51979 6.75239 7.14798 7.16507 7.83175 8.50004 9.31007 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012549 B = 0.002802 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.639538 B = 9989.674727 C =11415.834360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.028 3.972 3 C -0.191 4.191 4 C 0.332 3.668 5 O -0.488 6.488 6 N -0.537 5.537 7 C 0.166 3.834 8 C -0.216 4.216 9 C 0.567 3.433 10 O -0.555 6.555 11 N -0.712 5.712 12 C 0.160 3.840 13 H 0.092 0.908 14 C -0.118 4.118 15 C -0.090 4.090 16 C -0.103 4.103 17 H 0.062 0.938 18 C 0.200 3.800 19 N -0.627 5.627 20 C -0.232 4.232 21 H 0.080 0.920 22 C -0.067 4.067 23 N -0.950 5.950 24 Si 0.970 3.030 25 H -0.287 1.287 26 H -0.299 1.299 27 H -0.271 1.271 28 C 0.126 3.874 29 C -0.077 4.077 30 H 0.113 0.887 31 C -0.106 4.106 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.175 0.825 36 H 0.426 0.574 37 H 0.178 0.822 38 H 0.406 0.594 39 H 0.047 0.953 40 H 0.060 0.940 41 H 0.085 0.915 42 H 0.054 0.946 43 H 0.021 0.979 44 H -0.009 1.009 45 H 0.243 0.757 46 H 0.024 0.976 47 H 0.051 0.949 48 H 0.080 0.920 49 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.949 19.661 -8.807 22.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.020 3.980 3 C -0.211 4.211 4 C 0.154 3.846 5 O -0.299 6.299 6 N -0.256 5.256 7 C 0.007 3.993 8 C -0.222 4.222 9 C 0.355 3.645 10 O -0.435 6.435 11 N -0.362 5.362 12 C 0.056 3.944 13 H 0.110 0.890 14 C -0.157 4.157 15 C -0.128 4.128 16 C -0.123 4.123 17 H 0.081 0.919 18 C 0.075 3.925 19 N -0.354 5.354 20 C -0.361 4.361 21 H 0.097 0.903 22 C -0.260 4.260 23 N -0.599 5.599 24 Si 0.800 3.200 25 H -0.214 1.214 26 H -0.226 1.226 27 H -0.197 1.197 28 C 0.002 3.998 29 C -0.096 4.096 30 H 0.131 0.869 31 C -0.144 4.144 32 H 0.102 0.898 33 H 0.108 0.892 34 H 0.101 0.899 35 H 0.193 0.807 36 H 0.288 0.712 37 H 0.195 0.805 38 H 0.243 0.757 39 H 0.066 0.934 40 H 0.079 0.921 41 H 0.103 0.897 42 H 0.072 0.928 43 H 0.039 0.961 44 H 0.010 0.990 45 H 0.052 0.948 46 H 0.042 0.958 47 H 0.070 0.930 48 H 0.098 0.902 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.801 19.625 -9.294 22.755 hybrid contribution 0.949 -0.695 1.525 1.926 sum -5.852 18.930 -7.769 21.283 Atomic orbital electron populations 1.21080 0.87967 1.04340 1.04076 1.20608 0.98302 0.90704 0.88422 1.22198 0.93179 1.00255 1.05495 1.19619 0.87795 0.85308 0.91874 1.84667 1.75804 1.33271 1.36191 1.67209 1.42834 0.98969 1.16629 1.22965 0.90298 0.95736 0.90269 1.20888 0.95325 0.94380 1.11593 1.18032 0.86735 0.83743 0.76034 1.90716 1.14286 1.87344 1.51157 1.46022 1.11300 1.05584 1.73298 1.20874 0.95448 0.81271 0.96771 0.89018 1.21869 0.99513 0.97452 0.96859 1.20830 0.97761 0.92967 1.01266 1.21548 0.96521 0.98241 0.95943 0.91929 1.20745 0.85710 0.95440 0.90627 1.45350 1.11821 1.76403 1.01811 1.19428 0.90348 1.34923 0.91401 0.90253 1.25532 1.01285 1.02968 0.96217 1.70189 1.34435 1.54735 1.00581 0.85187 0.79911 0.77876 0.77042 1.21369 1.22596 1.19650 1.22426 0.95660 0.96129 0.85613 1.22219 0.96251 0.93863 0.97311 0.86929 1.21598 0.97999 0.93034 1.01808 0.89801 0.89151 0.89938 0.80729 0.71167 0.80480 0.75716 0.93396 0.92137 0.89678 0.92750 0.96117 0.99035 0.94799 0.95761 0.93034 0.90192 0.92869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.99 8.85 71.24 0.63 -1.36 16 2 C 0.03 0.52 5.95 -19.43 -0.12 0.41 16 3 C -0.19 -2.94 9.70 22.42 0.22 -2.73 16 4 C 0.33 6.14 7.74 84.82 0.66 6.80 16 5 O -0.49 -7.13 13.55 -88.09 -1.19 -8.32 16 6 N -0.54 -11.97 10.37 -307.80 -3.19 -15.16 16 7 C 0.17 3.41 10.69 85.04 0.91 4.31 16 8 C -0.22 -4.66 5.89 -19.99 -0.12 -4.77 16 9 C 0.57 14.03 7.69 86.72 0.67 14.70 16 10 O -0.55 -16.10 13.15 -3.94 -0.05 -16.15 16 11 N -0.71 -16.82 5.04 -445.77 -2.25 -19.06 16 12 C 0.16 4.24 2.40 44.97 0.11 4.35 16 13 H 0.09 2.40 7.58 -2.39 -0.02 2.39 16 14 C -0.12 -3.59 5.41 30.70 0.17 -3.43 16 15 C -0.09 -2.69 5.36 29.91 0.16 -2.53 16 16 C -0.10 -3.59 2.70 -11.00 -0.03 -3.62 16 17 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 18 C 0.20 9.54 4.36 86.33 0.38 9.92 16 19 N -0.63 -30.97 2.96 -685.30 -2.03 -33.00 16 20 C -0.23 -12.71 10.29 84.04 0.87 -11.85 16 21 H 0.08 4.18 7.83 -2.91 -0.02 4.15 16 22 C -0.07 -3.80 5.49 84.86 0.47 -3.33 16 23 N -0.95 -56.84 10.34 21.65 0.22 -56.62 16 24 Si 0.97 45.73 29.55 68.60 2.03 47.76 16 25 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 26 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 27 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 28 C 0.13 4.77 6.65 86.76 0.58 5.35 16 29 C -0.08 -2.33 3.67 -9.46 -0.03 -2.36 16 30 H 0.11 2.67 8.14 -2.38 -0.02 2.65 16 31 C -0.11 -3.03 4.29 30.46 0.13 -2.90 16 32 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.09 1.00 8.06 -2.39 -0.02 0.98 16 34 H 0.08 1.79 5.93 -2.38 -0.01 1.77 16 35 H 0.18 1.61 8.06 -2.91 -0.02 1.59 16 36 H 0.43 1.81 9.06 -74.06 -0.67 1.14 16 37 H 0.18 2.92 6.46 -2.91 -0.02 2.90 16 38 H 0.41 8.33 6.69 -92.71 -0.62 7.71 16 39 H 0.05 1.74 6.70 -2.38 -0.02 1.73 16 40 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 42 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.02 1.10 5.70 -2.39 -0.01 1.09 16 44 H -0.01 -0.48 7.50 -2.39 -0.02 -0.50 16 45 H 0.24 14.29 8.31 -92.71 -0.77 13.52 16 46 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 47 H 0.05 1.85 7.98 -2.39 -0.02 1.83 16 48 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 49 H 0.05 1.91 7.18 -2.38 -0.02 1.90 16 Total: -1.00 -73.36 381.60 -1.13 -74.49 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: -0.30 Total: 19.09 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: 5.63 Total: 6.97 kcal Atomic # 7 Polarization: -116.60 SS G_CDS: -7.25 Total: -123.84 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: -1.25 Total: -24.47 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -73.36 -1.13 -74.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980167885.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.732 kcal (2) G-P(sol) polarization free energy of solvation -73.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds