Wall clock time and date at job start Wed Apr 1 2020 06:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 O 1.33496 * 126.83169 * 2 1 4 4 N 1.20659 * 113.15949 * 180.02562 * 3 2 1 5 5 C 1.30013 * 112.29957 * 359.71412 * 4 3 2 6 6 C 1.50704 * 127.33705 * 180.30512 * 5 4 3 7 7 C 1.53003 * 117.49634 * 8.89043 * 6 5 4 8 8 C 1.52997 * 117.49644 * 300.23534 * 6 5 4 9 9 C 1.37364 * 126.82849 * 180.02562 * 2 1 3 10 10 C 1.47398 * 128.56594 * 359.95378 * 9 2 1 11 11 O 1.21608 * 120.00144 * 90.02316 * 10 9 2 12 12 N 1.34776 * 119.99886 * 270.02745 * 10 9 2 13 13 C 1.47670 * 134.45503 * 179.97438 * 12 10 9 14 14 C 1.53445 * 85.97550 * 155.70814 * 13 12 10 15 15 C 1.47674 * 134.45181 * 359.97438 * 12 10 9 16 16 C 1.52633 * 113.71483 * 268.85605 * 14 13 12 17 17 C 1.53183 * 109.35298 * 171.27226 * 16 14 13 18 18 C 1.52669 * 109.42857 * 58.92887 * 17 16 14 19 19 N 1.46902 * 109.34308 * 303.76841 * 18 17 16 20 20 C 1.36944 * 120.68830 * 235.31177 * 19 18 17 21 21 H 1.08001 * 119.99828 * 151.86347 * 20 19 18 22 22 C 1.38803 * 119.99932 * 331.86393 * 20 19 18 23 23 N 1.31619 * 120.00435 * 335.05172 * 22 20 19 24 24 Si 1.86799 * 120.00223 * 155.05291 * 22 20 19 25 25 H 1.48500 * 109.47410 * 89.99697 * 24 22 20 26 26 H 1.48495 * 109.47627 * 209.99922 * 24 22 20 27 27 H 1.48507 * 109.46931 * 329.99818 * 24 22 20 28 28 C 1.47119 * 118.62047 * 55.03887 * 19 18 17 29 29 H 1.09004 * 109.46921 * 269.97354 * 1 2 3 30 30 H 1.09001 * 109.47568 * 29.96801 * 1 2 3 31 31 H 1.09004 * 109.47481 * 149.97390 * 1 2 3 32 32 H 1.08991 * 115.55017 * 154.56105 * 6 5 4 33 33 H 1.09001 * 117.49728 * 0.02562 * 7 6 5 34 34 H 1.08997 * 117.50040 * 145.02283 * 7 6 5 35 35 H 1.08999 * 117.49784 * 214.97832 * 8 6 5 36 36 H 1.09007 * 117.49842 * 359.97121 * 8 6 5 37 37 H 1.09001 * 113.78847 * 41.44829 * 13 12 10 38 38 H 1.08993 * 113.79524 * 269.97669 * 13 12 10 39 39 H 1.09000 * 113.79087 * 90.02906 * 15 12 10 40 40 H 1.09000 * 113.79445 * 318.55302 * 15 12 10 41 41 H 1.09008 * 109.48858 * 291.23484 * 16 14 13 42 42 H 1.08998 * 109.49590 * 51.30343 * 16 14 13 43 43 H 1.08999 * 109.49054 * 179.01805 * 17 16 14 44 44 H 1.08997 * 109.49040 * 299.09174 * 17 16 14 45 45 H 1.08998 * 109.44336 * 183.78885 * 18 17 16 46 46 H 1.08998 * 109.37503 * 63.70665 * 18 17 16 47 47 H 0.97001 * 119.99673 * 354.26202 * 23 22 20 48 48 H 1.09000 * 109.63362 * 68.58036 * 28 19 18 49 49 H 1.09001 * 109.63332 * 189.19041 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.3072 1.0685 0.0000 4 7 3.4796 0.7833 -0.0005 5 6 3.6746 -0.5021 0.0051 6 6 4.9964 -1.2260 0.0128 7 6 6.2593 -0.3885 0.2240 8 6 5.9486 -0.9704 -1.1572 9 6 2.3303 -1.0995 -0.0005 10 6 1.9586 -2.5259 -0.0002 11 8 1.8050 -3.1144 -1.0532 12 7 1.7889 -3.1778 1.1671 13 6 1.4280 -4.5613 1.5361 14 6 2.1520 -4.2823 2.8598 15 6 1.8895 -2.7946 2.5898 16 6 3.6316 -4.6570 2.8411 17 6 4.3018 -4.1422 4.1187 18 6 3.6126 -4.7541 5.3358 19 7 2.1770 -4.4464 5.2878 20 6 1.5612 -3.8193 6.3380 21 1 0.6912 -3.2034 6.1642 22 6 2.0551 -3.9754 7.6258 23 7 2.7545 -5.0459 7.9372 24 14 1.7271 -2.6659 8.9170 25 1 0.4632 -2.9798 9.6305 26 1 2.8498 -2.6365 9.8886 27 1 1.6077 -1.3403 8.2584 28 6 1.4158 -4.8204 4.0857 29 1 -0.3633 -0.0005 1.0277 30 1 -0.3634 0.8902 -0.5133 31 1 -0.3634 -0.8898 -0.5142 32 1 4.9805 -2.2290 0.4389 33 1 6.1340 0.6860 0.3579 34 1 7.0745 -0.8407 0.7888 35 1 6.5595 -1.8052 -1.5006 36 1 5.6188 -0.2789 -1.9327 37 1 1.9119 -5.3206 0.9218 38 1 0.3555 -4.7214 1.6467 39 1 0.9542 -2.4291 3.0138 40 1 2.7400 -2.1503 2.8126 41 1 3.7315 -5.7413 2.7895 42 1 4.1101 -4.2057 1.9720 43 1 5.3548 -4.4238 4.1157 44 1 4.2154 -3.0565 4.1626 45 1 4.0446 -4.3368 6.2453 46 1 3.7542 -5.8348 5.3262 47 1 2.8547 -5.7642 7.2930 48 1 1.3425 -5.9061 4.0217 49 1 0.4177 -4.3851 4.1340 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981894467.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:29:34 Heat of formation + Delta-G solvation = 105.189166 kcal Electronic energy + Delta-G solvation = -31635.658656 eV Core-core repulsion = 27568.684699 eV Total energy + Delta-G solvation = -4066.973957 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 3.85 seconds Orbital eigenvalues (eV) -45.00806 -40.68931 -38.40874 -37.67549 -36.10037 -33.93860 -33.02146 -32.85687 -30.80799 -29.98899 -28.25152 -26.41559 -26.19466 -25.29272 -24.72319 -23.51019 -22.62582 -22.41572 -20.88020 -19.92783 -19.13435 -18.01764 -17.93583 -17.63324 -17.41603 -16.69381 -16.09358 -15.69208 -15.49941 -14.77778 -14.51061 -14.25121 -14.12440 -13.78363 -13.58115 -13.54654 -13.39665 -13.21561 -13.06931 -12.80096 -12.45962 -12.27100 -12.02394 -11.86673 -11.85599 -11.72965 -11.55714 -11.41194 -11.13081 -10.79902 -10.65210 -10.52265 -10.35297 -10.13672 -10.07323 -10.00417 -9.83389 -9.71147 -9.51336 -9.32573 -8.69189 -8.41983 -6.94804 -6.13210 -3.30436 1.15179 1.68861 2.35413 2.59792 2.98248 3.45407 3.49542 3.57829 3.64176 3.73782 4.05779 4.33795 4.48491 4.58038 4.60324 4.64841 4.74101 4.85099 4.96927 5.07560 5.09554 5.12523 5.24168 5.29949 5.37879 5.39707 5.44175 5.48451 5.54335 5.60423 5.63176 5.64762 5.70864 5.75379 5.80579 5.85885 5.87336 5.89585 6.08891 6.21922 6.34997 6.40962 6.50923 6.58899 6.63802 7.01270 7.14236 7.63624 7.92076 8.04305 8.07176 8.51134 9.03543 9.77169 10.21481 11.15433 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011556 B = 0.003353 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.339925 B = 8348.560958 C = 8371.171256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.015 3.985 3 O 0.097 5.903 4 N -0.355 5.355 5 C 0.090 3.910 6 C -0.091 4.091 7 C -0.159 4.159 8 C -0.158 4.158 9 C -0.235 4.235 10 C 0.619 3.381 11 O -0.536 6.536 12 N -0.629 5.629 13 C 0.116 3.884 14 C -0.101 4.101 15 C 0.124 3.876 16 C -0.083 4.083 17 C -0.136 4.136 18 C 0.149 3.851 19 N -0.595 5.595 20 C -0.351 4.351 21 H 0.056 0.944 22 C -0.021 4.021 23 N -0.914 5.914 24 Si 1.063 2.937 25 H -0.294 1.294 26 H -0.286 1.286 27 H -0.292 1.292 28 C 0.164 3.836 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.127 0.873 33 H 0.102 0.898 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.096 0.904 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.078 0.922 41 H 0.062 0.938 42 H 0.049 0.951 43 H 0.053 0.947 44 H 0.057 0.943 45 H 0.080 0.920 46 H 0.016 0.984 47 H 0.270 0.730 48 H 0.024 0.976 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.376 7.207 -15.653 17.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.048 4.048 3 O 0.035 5.965 4 N -0.060 5.060 5 C -0.072 4.072 6 C -0.110 4.110 7 C -0.196 4.196 8 C -0.196 4.196 9 C -0.242 4.242 10 C 0.406 3.594 11 O -0.414 6.414 12 N -0.364 5.364 13 C -0.006 4.006 14 C -0.104 4.104 15 C 0.002 3.998 16 C -0.120 4.120 17 C -0.175 4.175 18 C 0.023 3.977 19 N -0.318 5.318 20 C -0.479 4.479 21 H 0.073 0.927 22 C -0.223 4.223 23 N -0.554 5.554 24 Si 0.892 3.108 25 H -0.221 1.221 26 H -0.212 1.212 27 H -0.219 1.219 28 C 0.037 3.963 29 H 0.114 0.886 30 H 0.109 0.891 31 H 0.111 0.889 32 H 0.145 0.855 33 H 0.121 0.879 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.115 0.885 37 H 0.099 0.901 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.097 0.903 41 H 0.081 0.919 42 H 0.068 0.932 43 H 0.072 0.928 44 H 0.076 0.924 45 H 0.098 0.902 46 H 0.034 0.966 47 H 0.081 0.919 48 H 0.041 0.959 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.403 8.544 -14.792 17.140 hybrid contribution -0.748 -1.138 -1.595 2.097 sum 0.655 7.406 -16.387 17.995 Atomic orbital electron populations 1.20461 0.83166 1.05114 1.04789 1.24556 0.95980 0.85075 0.99216 1.84530 1.11057 1.32813 1.68077 1.73528 0.95851 1.16323 1.20326 1.23689 0.94221 0.88536 1.00708 1.20237 0.84877 0.99696 1.06159 1.23047 0.97057 1.00227 0.99275 1.23048 1.01211 1.03592 0.91714 1.21762 0.92667 0.95048 1.14744 1.16459 0.76868 0.83510 0.82558 1.90806 1.52280 1.67673 1.30623 1.50136 1.67260 1.13494 1.05469 1.23307 1.00308 0.83203 0.93766 1.22595 0.97351 0.95012 0.95435 1.23270 1.01983 0.97916 0.76655 1.21113 0.92528 1.00508 0.97865 1.21988 0.98252 1.00941 0.96303 1.20843 0.84450 0.96113 0.96333 1.44085 1.03014 1.69559 1.15179 1.19921 1.15407 1.25517 0.87105 0.92658 1.25792 0.99347 1.00451 0.96738 1.70755 1.42420 1.05108 1.37110 0.83576 0.76205 0.75207 0.75767 1.22146 1.21175 1.21892 1.20768 0.93943 0.96382 0.85187 0.88550 0.89072 0.88861 0.85537 0.87921 0.87625 0.87656 0.88520 0.90100 0.89400 0.89350 0.90317 0.91948 0.93220 0.92840 0.92402 0.90157 0.96567 0.91913 0.95867 0.92212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.63 10.33 36.00 0.37 -0.26 16 2 C 0.02 0.18 7.55 -34.63 -0.26 -0.08 16 3 O 0.10 1.26 11.06 18.64 0.21 1.47 16 4 N -0.35 -5.01 11.71 34.78 0.41 -4.61 16 5 C 0.09 1.27 7.08 -79.76 -0.56 0.70 16 6 C -0.09 -1.11 6.31 -91.77 -0.58 -1.69 16 7 C -0.16 -1.63 10.17 -26.69 -0.27 -1.90 16 8 C -0.16 -1.60 10.24 -26.70 -0.27 -1.88 16 9 C -0.24 -3.35 5.98 -102.89 -0.62 -3.97 16 10 C 0.62 9.61 7.83 -12.53 -0.10 9.51 16 11 O -0.54 -9.91 17.83 5.27 0.09 -9.81 16 12 N -0.63 -8.97 3.45 -181.73 -0.63 -9.59 16 13 C 0.12 1.55 7.97 -3.18 -0.03 1.52 16 14 C -0.10 -1.52 0.87 -154.43 -0.13 -1.66 16 15 C 0.12 1.80 7.57 -3.16 -0.02 1.78 16 16 C -0.08 -1.25 5.02 -26.82 -0.13 -1.38 16 17 C -0.14 -2.33 5.99 -26.81 -0.16 -2.49 16 18 C 0.15 3.19 4.62 -3.99 -0.02 3.17 16 19 N -0.59 -13.43 2.86 -172.75 -0.49 -13.93 16 20 C -0.35 -9.03 9.50 -15.06 -0.14 -9.18 16 21 H 0.06 1.43 7.94 -52.49 -0.42 1.01 16 22 C -0.02 -0.56 4.69 -17.43 -0.08 -0.64 16 23 N -0.91 -26.12 12.38 55.49 0.69 -25.44 16 24 Si 1.06 24.15 29.99 -169.99 -5.10 19.05 16 25 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 26 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 27 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 28 C 0.16 3.00 5.71 -3.81 -0.02 2.98 16 29 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.09 0.79 8.11 -51.93 -0.42 0.37 16 32 H 0.13 1.56 8.14 -51.93 -0.42 1.14 16 33 H 0.10 1.11 7.97 -51.93 -0.41 0.70 16 34 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.11 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.10 1.01 8.14 -51.92 -0.42 0.59 16 37 H 0.08 1.05 8.09 -51.93 -0.42 0.63 16 38 H 0.09 1.05 8.09 -51.93 -0.42 0.63 16 39 H 0.09 1.27 7.97 -51.93 -0.41 0.85 16 40 H 0.08 1.22 7.37 -51.93 -0.38 0.84 16 41 H 0.06 0.92 8.14 -51.92 -0.42 0.50 16 42 H 0.05 0.71 8.02 -51.93 -0.42 0.29 16 43 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.06 1.04 7.37 -51.93 -0.38 0.65 16 45 H 0.08 1.99 6.23 -51.93 -0.32 1.66 16 46 H 0.02 0.36 7.94 -51.93 -0.41 -0.05 16 47 H 0.27 7.75 6.77 -40.82 -0.28 7.47 16 48 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.06 1.08 7.78 -51.93 -0.40 0.67 16 LS Contribution 400.96 15.07 6.04 6.04 Total: -1.00 -31.35 400.96 -9.52 -40.88 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -7.70 Total: 1.41 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: -3.04 Total: -5.46 kcal Atomic # 7 Polarization: -53.54 SS G_CDS: -0.03 Total: -53.56 kcal Atomic # 8 Polarization: -8.65 SS G_CDS: 0.30 Total: -8.35 kcal Atomic # 14 Polarization: 24.15 SS G_CDS: -5.10 Total: 19.05 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.35 -9.52 -40.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981894467.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.065 kcal (2) G-P(sol) polarization free energy of solvation -31.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.85 seconds