Wall clock time and date at job start Wed Apr 1 2020 06:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 O 1.33496 * 126.83169 * 2 1 4 4 N 1.20659 * 113.15949 * 180.02562 * 3 2 1 5 5 C 1.30013 * 112.29957 * 359.71412 * 4 3 2 6 6 C 1.50704 * 127.33705 * 180.30512 * 5 4 3 7 7 C 1.53003 * 117.49634 * 8.89043 * 6 5 4 8 8 C 1.52997 * 117.49644 * 300.23534 * 6 5 4 9 9 C 1.37364 * 126.82849 * 180.02562 * 2 1 3 10 10 C 1.47398 * 128.56594 * 359.95378 * 9 2 1 11 11 O 1.21608 * 120.00144 * 90.02316 * 10 9 2 12 12 N 1.34776 * 119.99886 * 270.02745 * 10 9 2 13 13 C 1.47670 * 134.45503 * 179.97438 * 12 10 9 14 14 C 1.53445 * 85.97550 * 155.70814 * 13 12 10 15 15 C 1.47674 * 134.45181 * 359.97438 * 12 10 9 16 16 C 1.52633 * 113.71483 * 268.85605 * 14 13 12 17 17 C 1.53183 * 109.35298 * 171.27226 * 16 14 13 18 18 C 1.52669 * 109.42857 * 58.92887 * 17 16 14 19 19 N 1.46902 * 109.34308 * 303.76841 * 18 17 16 20 20 C 1.36944 * 120.68830 * 235.31177 * 19 18 17 21 21 H 1.08001 * 119.99828 * 151.86347 * 20 19 18 22 22 C 1.38803 * 119.99932 * 331.86393 * 20 19 18 23 23 N 1.31619 * 120.00435 * 335.05172 * 22 20 19 24 24 Si 1.86799 * 120.00223 * 155.05291 * 22 20 19 25 25 H 1.48500 * 109.47410 * 89.99697 * 24 22 20 26 26 H 1.48495 * 109.47627 * 209.99922 * 24 22 20 27 27 H 1.48507 * 109.46931 * 329.99818 * 24 22 20 28 28 C 1.47119 * 118.62047 * 55.03887 * 19 18 17 29 29 H 1.09004 * 109.46921 * 269.97354 * 1 2 3 30 30 H 1.09001 * 109.47568 * 29.96801 * 1 2 3 31 31 H 1.09004 * 109.47481 * 149.97390 * 1 2 3 32 32 H 1.08991 * 115.55017 * 154.56105 * 6 5 4 33 33 H 1.09001 * 117.49728 * 0.02562 * 7 6 5 34 34 H 1.08997 * 117.50040 * 145.02283 * 7 6 5 35 35 H 1.08999 * 117.49784 * 214.97832 * 8 6 5 36 36 H 1.09007 * 117.49842 * 359.97121 * 8 6 5 37 37 H 1.09001 * 113.78847 * 41.44829 * 13 12 10 38 38 H 1.08993 * 113.79524 * 269.97669 * 13 12 10 39 39 H 1.09000 * 113.79087 * 90.02906 * 15 12 10 40 40 H 1.09000 * 113.79445 * 318.55302 * 15 12 10 41 41 H 1.09008 * 109.48858 * 291.23484 * 16 14 13 42 42 H 1.08998 * 109.49590 * 51.30343 * 16 14 13 43 43 H 1.08999 * 109.49054 * 179.01805 * 17 16 14 44 44 H 1.08997 * 109.49040 * 299.09174 * 17 16 14 45 45 H 1.08998 * 109.44336 * 183.78885 * 18 17 16 46 46 H 1.08998 * 109.37503 * 63.70665 * 18 17 16 47 47 H 0.97001 * 119.99673 * 354.26202 * 23 22 20 48 48 H 1.09000 * 109.63362 * 68.58036 * 28 19 18 49 49 H 1.09001 * 109.63332 * 189.19041 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.3072 1.0685 0.0000 4 7 3.4796 0.7833 -0.0005 5 6 3.6746 -0.5021 0.0051 6 6 4.9964 -1.2260 0.0128 7 6 6.2593 -0.3885 0.2240 8 6 5.9486 -0.9704 -1.1572 9 6 2.3303 -1.0995 -0.0005 10 6 1.9586 -2.5259 -0.0002 11 8 1.8050 -3.1144 -1.0532 12 7 1.7889 -3.1778 1.1671 13 6 1.4280 -4.5613 1.5361 14 6 2.1520 -4.2823 2.8598 15 6 1.8895 -2.7946 2.5898 16 6 3.6316 -4.6570 2.8411 17 6 4.3018 -4.1422 4.1187 18 6 3.6126 -4.7541 5.3358 19 7 2.1770 -4.4464 5.2878 20 6 1.5612 -3.8193 6.3380 21 1 0.6912 -3.2034 6.1642 22 6 2.0551 -3.9754 7.6258 23 7 2.7545 -5.0459 7.9372 24 14 1.7271 -2.6659 8.9170 25 1 0.4632 -2.9798 9.6305 26 1 2.8498 -2.6365 9.8886 27 1 1.6077 -1.3403 8.2584 28 6 1.4158 -4.8204 4.0857 29 1 -0.3633 -0.0005 1.0277 30 1 -0.3634 0.8902 -0.5133 31 1 -0.3634 -0.8898 -0.5142 32 1 4.9805 -2.2290 0.4389 33 1 6.1340 0.6860 0.3579 34 1 7.0745 -0.8407 0.7888 35 1 6.5595 -1.8052 -1.5006 36 1 5.6188 -0.2789 -1.9327 37 1 1.9119 -5.3206 0.9218 38 1 0.3555 -4.7214 1.6467 39 1 0.9542 -2.4291 3.0138 40 1 2.7400 -2.1503 2.8126 41 1 3.7315 -5.7413 2.7895 42 1 4.1101 -4.2057 1.9720 43 1 5.3548 -4.4238 4.1157 44 1 4.2154 -3.0565 4.1626 45 1 4.0446 -4.3368 6.2453 46 1 3.7542 -5.8348 5.3262 47 1 2.8547 -5.7642 7.2930 48 1 1.3425 -5.9061 4.0217 49 1 0.4177 -4.3851 4.1340 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981894467.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:29:32 Heat of formation + Delta-G solvation = 88.855485 kcal Electronic energy + Delta-G solvation = -31636.366937 eV Core-core repulsion = 27568.684699 eV Total energy + Delta-G solvation = -4067.682239 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -46.01244 -41.92966 -39.70324 -38.55232 -37.68443 -34.92704 -34.51995 -33.95987 -32.38883 -31.48782 -29.14484 -27.63715 -27.39001 -27.08757 -25.74629 -24.54800 -24.02469 -23.42121 -22.38876 -21.07005 -20.17082 -19.36260 -19.24823 -18.97028 -18.68692 -17.76783 -17.22910 -16.88813 -16.42113 -16.26041 -15.89674 -15.67412 -15.44330 -15.25648 -15.03018 -14.75690 -14.37081 -14.17975 -14.12143 -13.97028 -13.74503 -13.42692 -13.29728 -13.13105 -12.95489 -12.76386 -12.69505 -12.58953 -12.51796 -12.34851 -12.01116 -11.90608 -11.82207 -11.68628 -11.49272 -11.36511 -11.23052 -11.05716 -10.66449 -10.48211 -10.39167 -9.87172 -8.85134 -8.17546 -5.33024 0.19314 0.67534 1.18617 1.55296 1.61809 1.68701 1.84938 1.97428 2.68040 2.71564 2.79220 3.10678 3.17488 3.31269 3.42214 3.65482 3.69801 3.75074 3.80213 3.89680 3.92211 3.95377 4.18161 4.23776 4.26328 4.36878 4.46663 4.50510 4.51829 4.56005 4.58703 4.60245 4.61278 4.67307 4.75760 4.84184 4.86454 4.87613 4.94848 4.99679 5.00960 5.04885 5.08496 5.19073 5.24435 5.35208 5.49943 5.91027 6.44885 6.46640 6.86360 7.09035 7.11517 7.83506 8.28939 9.07814 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011556 B = 0.003353 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.339925 B = 8348.560958 C = 8371.171256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.031 3.969 3 O 0.094 5.906 4 N -0.372 5.372 5 C 0.084 3.916 6 C -0.115 4.115 7 C -0.149 4.149 8 C -0.147 4.147 9 C -0.269 4.269 10 C 0.626 3.374 11 O -0.570 6.570 12 N -0.623 5.623 13 C 0.123 3.877 14 C -0.096 4.096 15 C 0.130 3.870 16 C -0.076 4.076 17 C -0.123 4.123 18 C 0.155 3.845 19 N -0.611 5.611 20 C -0.346 4.346 21 H 0.055 0.945 22 C -0.073 4.073 23 N -0.946 5.946 24 Si 1.108 2.892 25 H -0.285 1.285 26 H -0.295 1.295 27 H -0.276 1.276 28 C 0.165 3.835 29 H 0.112 0.888 30 H 0.117 0.883 31 H 0.092 0.908 32 H 0.123 0.877 33 H 0.094 0.906 34 H 0.123 0.877 35 H 0.124 0.876 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.107 0.893 39 H 0.094 0.906 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.064 0.936 43 H 0.071 0.929 44 H 0.050 0.950 45 H 0.042 0.958 46 H 0.005 0.995 47 H 0.256 0.744 48 H 0.023 0.977 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.208 8.137 -16.965 18.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.032 4.032 3 O 0.035 5.965 4 N -0.079 5.079 5 C -0.078 4.078 6 C -0.134 4.134 7 C -0.186 4.186 8 C -0.185 4.185 9 C -0.276 4.276 10 C 0.415 3.585 11 O -0.450 6.450 12 N -0.356 5.356 13 C 0.001 3.999 14 C -0.098 4.098 15 C 0.008 3.992 16 C -0.114 4.114 17 C -0.162 4.162 18 C 0.029 3.971 19 N -0.335 5.335 20 C -0.476 4.476 21 H 0.073 0.927 22 C -0.270 4.270 23 N -0.588 5.588 24 Si 0.933 3.067 25 H -0.212 1.212 26 H -0.222 1.222 27 H -0.201 1.201 28 C 0.039 3.961 29 H 0.131 0.869 30 H 0.136 0.864 31 H 0.110 0.890 32 H 0.141 0.859 33 H 0.113 0.887 34 H 0.141 0.859 35 H 0.143 0.857 36 H 0.109 0.891 37 H 0.107 0.893 38 H 0.125 0.875 39 H 0.112 0.888 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.082 0.918 43 H 0.089 0.911 44 H 0.069 0.931 45 H 0.060 0.940 46 H 0.023 0.977 47 H 0.066 0.934 48 H 0.041 0.959 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.798 9.484 -16.129 18.727 hybrid contribution -0.611 -1.441 -1.219 1.984 sum 0.187 8.043 -17.347 19.122 Atomic orbital electron populations 1.20696 0.80357 1.06367 1.06122 1.25219 0.97331 0.84138 0.96559 1.84507 1.10937 1.33076 1.68027 1.73509 0.96450 1.16481 1.21452 1.24015 0.94953 0.88627 1.00165 1.20356 0.84984 0.99816 1.08208 1.23091 0.96345 0.99639 0.99522 1.23127 1.00188 1.03910 0.91286 1.21781 0.93422 0.94949 1.17454 1.16499 0.76109 0.83801 0.82111 1.90783 1.53939 1.68573 1.31681 1.50065 1.66695 1.13778 1.05080 1.23367 1.01337 0.82968 0.92229 1.22409 0.97194 0.95379 0.94837 1.23195 1.01940 0.97283 0.76760 1.21062 0.92359 1.00958 0.96979 1.21813 0.99026 1.00076 0.95262 1.20684 0.84383 0.95358 0.96664 1.44285 1.03769 1.69744 1.15741 1.20179 1.14890 1.24589 0.87909 0.92689 1.26943 0.99643 1.01400 0.99017 1.70866 1.44972 1.05926 1.37051 0.82958 0.75939 0.73926 0.73846 1.21190 1.22165 1.20111 1.20862 0.94079 0.96483 0.84680 0.86937 0.86412 0.88971 0.85868 0.88707 0.85874 0.85747 0.89050 0.89285 0.87481 0.88770 0.91187 0.91275 0.91782 0.91057 0.93133 0.93968 0.97738 0.93448 0.95863 0.91896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.08 10.33 71.23 0.74 -0.34 16 2 C 0.03 0.70 7.55 25.48 0.19 0.90 16 3 O 0.09 2.34 11.06 76.95 0.85 3.20 16 4 N -0.37 -10.26 11.71 -44.78 -0.52 -10.78 16 5 C 0.08 2.30 7.08 45.16 0.32 2.62 16 6 C -0.11 -2.69 6.31 -11.54 -0.07 -2.77 16 7 C -0.15 -2.84 10.17 30.62 0.31 -2.53 16 8 C -0.15 -2.78 10.24 30.62 0.31 -2.47 16 9 C -0.27 -7.37 5.98 -18.74 -0.11 -7.48 16 10 C 0.63 18.57 7.83 86.66 0.68 19.25 16 11 O -0.57 -20.42 17.83 -4.06 -0.07 -20.49 16 12 N -0.62 -16.51 3.45 -847.13 -2.92 -19.43 16 13 C 0.12 2.95 7.97 86.30 0.69 3.64 16 14 C -0.10 -2.69 0.87 -52.03 -0.05 -2.74 16 15 C 0.13 3.56 7.57 86.31 0.65 4.21 16 16 C -0.08 -2.15 5.02 30.53 0.15 -1.99 16 17 C -0.12 -4.10 5.99 30.55 0.18 -3.92 16 18 C 0.15 6.75 4.62 86.19 0.40 7.15 16 19 N -0.61 -27.56 2.86 -700.46 -2.00 -29.56 16 20 C -0.35 -17.82 9.50 84.03 0.80 -17.02 16 21 H 0.06 2.79 7.94 -2.91 -0.02 2.77 16 22 C -0.07 -3.97 4.69 84.86 0.40 -3.57 16 23 N -0.95 -55.47 12.38 21.65 0.27 -55.20 16 24 Si 1.11 48.93 29.99 68.60 2.06 50.99 16 25 H -0.29 -12.08 7.11 99.48 0.71 -11.37 16 26 H -0.30 -13.39 7.11 99.48 0.71 -12.69 16 27 H -0.28 -11.28 7.11 99.48 0.71 -10.57 16 28 C 0.16 5.81 5.71 86.19 0.49 6.30 16 29 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.09 1.34 8.11 -2.39 -0.02 1.33 16 32 H 0.12 2.91 8.14 -2.39 -0.02 2.89 16 33 H 0.09 1.97 7.97 -2.39 -0.02 1.95 16 34 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 37 H 0.09 2.06 8.09 -2.39 -0.02 2.04 16 38 H 0.11 2.22 8.09 -2.39 -0.02 2.20 16 39 H 0.09 2.49 7.97 -2.39 -0.02 2.47 16 40 H 0.07 2.07 7.37 -2.39 -0.02 2.05 16 41 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 42 H 0.06 1.67 8.02 -2.39 -0.02 1.66 16 43 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 44 H 0.05 1.77 7.37 -2.39 -0.02 1.75 16 45 H 0.04 2.15 6.23 -2.39 -0.01 2.14 16 46 H 0.00 0.21 7.94 -2.39 -0.02 0.19 16 47 H 0.26 15.22 6.77 -92.71 -0.63 14.59 16 48 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 49 H 0.06 2.16 7.78 -2.39 -0.02 2.14 16 Total: -1.00 -68.85 400.96 4.83 -64.02 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: 1.09 Total: 18.03 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: 6.08 Total: -0.77 kcal Atomic # 7 Polarization: -109.79 SS G_CDS: -5.18 Total: -114.97 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: 0.78 Total: -17.29 kcal Atomic # 14 Polarization: 48.93 SS G_CDS: 2.06 Total: 50.99 kcal Total: -68.85 4.83 -64.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981894467.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.877 kcal (2) G-P(sol) polarization free energy of solvation -68.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds