Wall clock time and date at job start Wed Apr 1 2020 03:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37996 * 120.82254 * 2 1 4 4 C 1.39126 * 119.26638 * 180.02562 * 3 2 1 5 5 O 1.35501 * 119.52412 * 179.97438 * 4 3 2 6 6 N 1.32431 * 120.94873 * 0.02562 * 4 3 2 7 7 C 1.31643 * 121.80329 * 359.72330 * 6 4 3 8 8 C 1.39560 * 120.61967 * 0.53986 * 7 6 4 9 9 C 1.47614 * 120.49513 * 179.75263 * 8 7 6 10 10 O 1.21584 * 120.00026 * 139.90690 * 9 8 7 11 11 N 1.34776 * 120.00094 * 319.90169 * 9 8 7 12 12 C 1.48104 * 127.84336 * 4.72564 * 11 9 8 13 13 C 1.54311 * 104.71424 * 219.77924 * 12 11 9 14 14 C 1.53004 * 112.07971 * 97.95829 * 13 12 11 15 15 C 1.54057 * 108.91772 * 223.84478 * 13 12 11 16 16 N 1.47202 * 106.25323 * 131.01259 * 15 13 12 17 17 C 1.36940 * 126.69651 * 148.61566 * 16 15 13 18 18 H 1.08000 * 120.00341 * 345.56834 * 17 16 15 19 19 C 1.38816 * 119.99857 * 165.56972 * 17 16 15 20 20 N 1.31618 * 119.99725 * 350.94534 * 19 17 16 21 21 Si 1.86800 * 120.00033 * 170.93835 * 19 17 16 22 22 H 1.48497 * 109.46969 * 60.00518 * 21 19 17 23 23 H 1.48502 * 109.46860 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47101 * 300.00353 * 21 19 17 25 25 C 1.47196 * 106.59646 * 328.35070 * 16 15 13 26 26 C 1.53759 * 106.40658 * 31.56928 * 25 16 15 27 27 C 1.53001 * 112.06465 * 104.50941 * 26 25 16 28 28 C 1.48109 * 127.84607 * 184.72427 * 11 9 8 29 29 H 1.08994 * 109.47296 * 264.43091 * 1 2 3 30 30 H 1.09002 * 109.46858 * 24.43411 * 1 2 3 31 31 H 1.09005 * 109.46970 * 144.43131 * 1 2 3 32 32 H 1.08008 * 120.36603 * 359.97438 * 3 2 1 33 33 H 0.96698 * 114.00000 * 90.00330 * 5 4 3 34 34 H 1.07997 * 119.69056 * 180.27091 * 7 6 4 35 35 H 1.09000 * 110.39126 * 338.58835 * 12 11 9 36 36 H 1.09002 * 110.38847 * 100.85624 * 12 11 9 37 37 H 1.08999 * 109.46727 * 302.41818 * 14 13 12 38 38 H 1.09007 * 109.46582 * 62.40892 * 14 13 12 39 39 H 1.08993 * 109.47329 * 182.41364 * 14 13 12 40 40 H 1.09002 * 110.21002 * 11.78706 * 15 13 12 41 41 H 1.09002 * 110.07557 * 250.16920 * 15 13 12 42 42 H 0.97001 * 119.99992 * 179.97438 * 20 19 17 43 43 H 1.09004 * 110.06650 * 150.80908 * 25 16 15 44 44 H 1.08997 * 110.07052 * 272.33078 * 25 16 15 45 45 H 1.08998 * 109.47271 * 61.01146 * 27 26 25 46 46 H 1.08995 * 109.46968 * 181.01589 * 27 26 25 47 47 H 1.09000 * 109.46883 * 301.01066 * 27 26 25 48 48 H 1.08999 * 110.38940 * 21.40998 * 28 11 9 49 49 H 1.09008 * 110.48521 * 259.08083 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1851 0.0000 4 6 3.6048 1.1473 -0.0005 5 8 4.3043 2.3078 -0.0011 6 7 4.2547 -0.0066 -0.0016 7 6 3.6205 -1.1601 0.0033 8 6 2.2256 -1.2044 -0.0016 9 6 1.5172 -2.4994 -0.0016 10 8 0.5164 -2.6449 0.6733 11 7 1.9798 -3.5206 -0.7498 12 6 3.2227 -3.5677 -1.5538 13 6 2.8262 -4.3142 -2.8448 14 6 2.5194 -3.3522 -3.9943 15 6 3.9271 -5.3353 -3.1894 16 7 3.2395 -6.6107 -3.4490 17 6 3.6368 -7.5927 -4.3168 18 1 4.3942 -7.3845 -5.0579 19 6 3.0660 -8.8560 -4.2437 20 7 2.2784 -9.1649 -3.2355 21 14 3.4156 -10.1174 -5.5764 22 1 4.8750 -10.3860 -5.6331 23 1 2.6917 -11.3768 -5.2680 24 1 2.9577 -9.5920 -6.8876 25 6 2.0450 -6.6270 -2.5890 26 6 1.5918 -5.1645 -2.4476 27 6 0.3560 -4.8611 -3.2971 28 6 1.3606 -4.8503 -0.9546 29 1 -0.3633 -0.0997 1.0227 30 1 -0.3633 0.9357 -0.4251 31 1 -0.3633 -0.8360 -0.5978 32 1 1.6935 2.1314 -0.0004 33 1 4.5077 2.6448 0.8822 34 1 4.1849 -2.0809 0.0067 35 1 3.5622 -2.5587 -1.7877 36 1 3.9997 -4.1149 -1.0200 37 1 1.7217 -2.6720 -3.6957 38 1 3.4141 -2.7787 -4.2367 39 1 2.2039 -3.9204 -4.8693 40 1 4.6148 -5.4450 -2.3509 41 1 4.4695 -5.0148 -4.0790 42 1 1.8792 -10.0475 -3.1846 43 1 1.2572 -7.2195 -3.0543 44 1 2.2941 -7.0377 -1.6106 45 1 -0.4721 -5.4909 -2.9720 46 1 0.0828 -3.8125 -3.1795 47 1 0.5769 -5.0637 -4.3451 48 1 0.2936 -4.8102 -0.7357 49 1 1.8479 -5.5984 -0.3291 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000982545938.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:40 Heat of formation + Delta-G solvation = -1.405853 kcal Electronic energy + Delta-G solvation = -31701.175035 eV Core-core repulsion = 27629.578771 eV Total energy + Delta-G solvation = -4071.596264 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.22336 -40.22804 -38.63680 -37.23691 -35.20131 -34.09603 -32.91341 -31.96887 -30.78153 -30.55598 -28.37691 -27.31698 -25.83241 -25.77756 -25.04869 -24.24240 -22.58545 -22.11330 -20.27239 -19.77546 -18.73316 -18.01642 -17.66409 -17.10048 -16.54283 -16.18128 -15.92030 -15.27715 -14.84770 -14.64094 -14.42668 -14.37276 -13.83380 -13.67706 -13.41166 -13.33846 -13.19186 -13.05784 -12.85899 -12.62814 -12.43573 -12.12944 -12.04960 -12.00296 -11.86506 -11.81429 -11.33956 -11.27029 -10.85070 -10.83426 -10.63830 -10.31915 -10.02094 -9.98880 -9.95906 -9.88104 -9.85182 -9.66819 -9.54332 -9.21600 -8.66001 -8.57896 -6.86431 -5.81388 -3.15104 0.35093 0.83317 2.59474 2.92390 3.13769 3.37127 3.42395 3.42984 3.47943 4.20714 4.28385 4.38120 4.44957 4.65376 4.73699 4.84210 4.93554 5.10026 5.10723 5.30185 5.40258 5.40641 5.45447 5.48065 5.50283 5.55686 5.60092 5.68214 5.71329 5.82311 5.94856 5.95553 6.04378 6.08652 6.13154 6.16827 6.21869 6.27035 6.41551 6.45142 6.60763 6.69174 6.76185 6.88810 7.07951 7.34832 7.50290 7.52000 7.59729 7.71515 8.09834 8.21041 9.12129 9.74154 10.45901 11.32238 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.020873 B = 0.002863 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.135546 B = 9776.326179 C =10413.715719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.026 3.974 3 C -0.195 4.195 4 C 0.330 3.670 5 O -0.481 6.481 6 N -0.508 5.508 7 C 0.161 3.839 8 C -0.189 4.189 9 C 0.582 3.418 10 O -0.537 6.537 11 N -0.609 5.609 12 C 0.101 3.899 13 C -0.080 4.080 14 C -0.121 4.121 15 C 0.143 3.857 16 N -0.591 5.591 17 C -0.231 4.231 18 H 0.075 0.925 19 C -0.003 4.003 20 N -0.915 5.915 21 Si 0.910 3.090 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.285 1.285 25 C 0.179 3.821 26 C -0.091 4.091 27 C -0.118 4.118 28 C 0.118 3.882 29 H 0.089 0.911 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.147 0.853 33 H 0.403 0.597 34 H 0.169 0.831 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.048 0.952 38 H 0.049 0.951 39 H 0.065 0.935 40 H 0.022 0.978 41 H 0.045 0.955 42 H 0.255 0.745 43 H 0.079 0.921 44 H 0.026 0.974 45 H 0.053 0.947 46 H 0.043 0.957 47 H 0.062 0.938 48 H 0.079 0.921 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.404 20.127 6.792 21.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.018 3.982 3 C -0.216 4.216 4 C 0.152 3.848 5 O -0.289 6.289 6 N -0.227 5.227 7 C 0.003 3.997 8 C -0.195 4.195 9 C 0.370 3.630 10 O -0.415 6.415 11 N -0.341 5.341 12 C -0.022 4.022 13 C -0.082 4.082 14 C -0.178 4.178 15 C 0.016 3.984 16 N -0.315 5.315 17 C -0.359 4.359 18 H 0.093 0.907 19 C -0.200 4.200 20 N -0.561 5.561 21 Si 0.740 3.260 22 H -0.210 1.210 23 H -0.216 1.216 24 H -0.211 1.211 25 C 0.052 3.948 26 C -0.094 4.094 27 C -0.175 4.175 28 C -0.003 4.003 29 H 0.107 0.893 30 H 0.089 0.911 31 H 0.099 0.901 32 H 0.164 0.836 33 H 0.262 0.738 34 H 0.186 0.814 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.084 0.916 40 H 0.039 0.961 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.097 0.903 44 H 0.044 0.956 45 H 0.072 0.928 46 H 0.062 0.938 47 H 0.081 0.919 48 H 0.098 0.902 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.146 19.900 6.561 20.985 hybrid contribution -0.396 -0.612 -0.132 0.741 sum -1.542 19.289 6.428 20.390 Atomic orbital electron populations 1.20901 0.88918 1.03246 1.04187 1.20260 0.97399 0.90617 0.89943 1.21934 0.93748 0.99392 1.06563 1.19347 0.87081 0.85247 0.93163 1.84719 1.75969 1.34096 1.34092 1.67205 1.41931 0.98182 1.15357 1.22921 0.90283 0.95387 0.91131 1.20879 0.95321 0.94414 1.08847 1.17427 0.83951 0.82175 0.79402 1.90792 1.26071 1.82772 1.41864 1.48989 1.24426 1.14334 1.46329 1.22944 0.86587 1.00943 0.91748 1.22302 0.96960 0.95416 0.93512 1.21629 1.00447 0.97905 0.97858 1.21464 0.92281 0.86700 0.97944 1.44422 1.23508 1.16114 1.47447 1.18941 1.20132 0.88816 1.08015 0.90686 1.24852 1.00444 0.96829 0.97887 1.69908 1.35673 1.20840 1.29686 0.86236 0.77720 0.80728 0.81283 1.21042 1.21596 1.21134 1.21280 0.90763 0.88229 0.94483 1.22520 0.94619 0.99671 0.92565 1.21602 0.96049 0.99716 1.00154 1.22667 0.99166 0.82167 0.96328 0.89274 0.91082 0.90144 0.83573 0.73843 0.81425 0.90554 0.90019 0.93273 0.93159 0.91570 0.96092 0.93689 0.93536 0.90298 0.95640 0.92813 0.93814 0.91896 0.90249 0.90287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.11 8.82 36.00 0.32 -0.80 16 2 C 0.03 0.28 5.94 -103.96 -0.62 -0.34 16 3 C -0.20 -1.81 9.70 -39.34 -0.38 -2.19 16 4 C 0.33 3.46 7.74 -16.96 -0.13 3.32 16 5 O -0.48 -4.11 13.55 -18.20 -0.25 -4.36 16 6 N -0.51 -6.16 10.37 -12.97 -0.13 -6.30 16 7 C 0.16 1.89 8.96 -17.14 -0.15 1.74 16 8 C -0.19 -2.36 5.51 -104.82 -0.58 -2.93 16 9 C 0.58 8.51 6.95 -12.43 -0.09 8.43 16 10 O -0.54 -9.16 15.55 5.29 0.08 -9.08 16 11 N -0.61 -8.80 3.31 -170.66 -0.57 -9.36 16 12 C 0.10 1.35 4.58 -2.47 -0.01 1.34 16 13 C -0.08 -1.25 1.09 -152.17 -0.17 -1.42 16 14 C -0.12 -1.72 7.54 37.16 0.28 -1.44 16 15 C 0.14 2.72 6.48 -3.11 -0.02 2.70 16 16 N -0.59 -14.05 3.38 -170.99 -0.58 -14.63 16 17 C -0.23 -6.12 10.28 -15.06 -0.15 -6.27 16 18 H 0.08 1.93 7.84 -52.49 -0.41 1.52 16 19 C 0.00 -0.08 5.39 -17.43 -0.09 -0.17 16 20 N -0.92 -25.80 10.85 55.49 0.60 -25.20 16 21 Si 0.91 21.38 29.56 -169.99 -5.03 16.36 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 C 0.18 3.96 4.84 -3.27 -0.02 3.94 16 26 C -0.09 -1.57 1.08 -152.33 -0.16 -1.73 16 27 C -0.12 -1.89 7.46 37.16 0.28 -1.62 16 28 C 0.12 1.89 6.20 -2.47 -0.02 1.88 16 29 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.07 0.50 8.07 -51.93 -0.42 0.08 16 31 H 0.08 0.91 6.97 -51.93 -0.36 0.55 16 32 H 0.15 0.97 8.06 -52.48 -0.42 0.54 16 33 H 0.40 1.32 9.06 45.56 0.41 1.73 16 34 H 0.17 1.77 6.33 -52.49 -0.33 1.44 16 35 H 0.08 0.92 5.62 -51.93 -0.29 0.63 16 36 H 0.08 1.06 7.13 -51.93 -0.37 0.69 16 37 H 0.05 0.66 7.21 -51.93 -0.37 0.29 16 38 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 1.03 7.18 -51.93 -0.37 0.65 16 40 H 0.02 0.40 7.10 -51.93 -0.37 0.03 16 41 H 0.04 0.84 7.88 -51.93 -0.41 0.43 16 42 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 43 H 0.08 1.99 6.45 -51.93 -0.34 1.65 16 44 H 0.03 0.62 7.10 -51.93 -0.37 0.25 16 45 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 46 H 0.04 0.64 7.21 -51.93 -0.37 0.26 16 47 H 0.06 1.07 7.20 -51.93 -0.37 0.70 16 48 H 0.08 1.28 7.66 -51.93 -0.40 0.88 16 49 H 0.08 1.31 7.14 -51.92 -0.37 0.94 16 LS Contribution 380.40 15.07 5.73 5.73 Total: -1.00 -32.08 380.40 -8.19 -40.27 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -6.35 Total: 2.12 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: -1.71 Total: 4.44 kcal Atomic # 7 Polarization: -54.81 SS G_CDS: -0.68 Total: -55.48 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: -0.16 Total: -13.43 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.36 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.08 -8.19 -40.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982545938.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.865 kcal (2) G-P(sol) polarization free energy of solvation -32.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds