Wall clock time and date at job start Wed Apr 1 2020 03:29:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37996 * 120.82254 * 2 1 4 4 C 1.39126 * 119.26638 * 180.02562 * 3 2 1 5 5 O 1.35501 * 119.52412 * 179.97438 * 4 3 2 6 6 N 1.32431 * 120.94873 * 0.02562 * 4 3 2 7 7 C 1.31643 * 121.80329 * 359.72330 * 6 4 3 8 8 C 1.39560 * 120.61967 * 0.53986 * 7 6 4 9 9 C 1.47614 * 120.49513 * 179.75263 * 8 7 6 10 10 O 1.21584 * 120.00026 * 139.90690 * 9 8 7 11 11 N 1.34776 * 120.00094 * 319.90169 * 9 8 7 12 12 C 1.48104 * 127.84336 * 4.72564 * 11 9 8 13 13 C 1.54311 * 104.71424 * 219.77924 * 12 11 9 14 14 C 1.53004 * 112.07971 * 97.95829 * 13 12 11 15 15 C 1.54057 * 108.91772 * 223.84478 * 13 12 11 16 16 N 1.47202 * 106.25323 * 131.01259 * 15 13 12 17 17 C 1.36940 * 126.69651 * 148.61566 * 16 15 13 18 18 H 1.08000 * 120.00341 * 345.56834 * 17 16 15 19 19 C 1.38816 * 119.99857 * 165.56972 * 17 16 15 20 20 N 1.31618 * 119.99725 * 350.94534 * 19 17 16 21 21 Si 1.86800 * 120.00033 * 170.93835 * 19 17 16 22 22 H 1.48497 * 109.46969 * 60.00518 * 21 19 17 23 23 H 1.48502 * 109.46860 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47101 * 300.00353 * 21 19 17 25 25 C 1.47196 * 106.59646 * 328.35070 * 16 15 13 26 26 C 1.53759 * 106.40658 * 31.56928 * 25 16 15 27 27 C 1.53001 * 112.06465 * 104.50941 * 26 25 16 28 28 C 1.48109 * 127.84607 * 184.72427 * 11 9 8 29 29 H 1.08994 * 109.47296 * 264.43091 * 1 2 3 30 30 H 1.09002 * 109.46858 * 24.43411 * 1 2 3 31 31 H 1.09005 * 109.46970 * 144.43131 * 1 2 3 32 32 H 1.08008 * 120.36603 * 359.97438 * 3 2 1 33 33 H 0.96698 * 114.00000 * 90.00330 * 5 4 3 34 34 H 1.07997 * 119.69056 * 180.27091 * 7 6 4 35 35 H 1.09000 * 110.39126 * 338.58835 * 12 11 9 36 36 H 1.09002 * 110.38847 * 100.85624 * 12 11 9 37 37 H 1.08999 * 109.46727 * 302.41818 * 14 13 12 38 38 H 1.09007 * 109.46582 * 62.40892 * 14 13 12 39 39 H 1.08993 * 109.47329 * 182.41364 * 14 13 12 40 40 H 1.09002 * 110.21002 * 11.78706 * 15 13 12 41 41 H 1.09002 * 110.07557 * 250.16920 * 15 13 12 42 42 H 0.97001 * 119.99992 * 179.97438 * 20 19 17 43 43 H 1.09004 * 110.06650 * 150.80908 * 25 16 15 44 44 H 1.08997 * 110.07052 * 272.33078 * 25 16 15 45 45 H 1.08998 * 109.47271 * 61.01146 * 27 26 25 46 46 H 1.08995 * 109.46968 * 181.01589 * 27 26 25 47 47 H 1.09000 * 109.46883 * 301.01066 * 27 26 25 48 48 H 1.08999 * 110.38940 * 21.40998 * 28 11 9 49 49 H 1.09008 * 110.48521 * 259.08083 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1851 0.0000 4 6 3.6048 1.1473 -0.0005 5 8 4.3043 2.3078 -0.0011 6 7 4.2547 -0.0066 -0.0016 7 6 3.6205 -1.1601 0.0033 8 6 2.2256 -1.2044 -0.0016 9 6 1.5172 -2.4994 -0.0016 10 8 0.5164 -2.6449 0.6733 11 7 1.9798 -3.5206 -0.7498 12 6 3.2227 -3.5677 -1.5538 13 6 2.8262 -4.3142 -2.8448 14 6 2.5194 -3.3522 -3.9943 15 6 3.9271 -5.3353 -3.1894 16 7 3.2395 -6.6107 -3.4490 17 6 3.6368 -7.5927 -4.3168 18 1 4.3942 -7.3845 -5.0579 19 6 3.0660 -8.8560 -4.2437 20 7 2.2784 -9.1649 -3.2355 21 14 3.4156 -10.1174 -5.5764 22 1 4.8750 -10.3860 -5.6331 23 1 2.6917 -11.3768 -5.2680 24 1 2.9577 -9.5920 -6.8876 25 6 2.0450 -6.6270 -2.5890 26 6 1.5918 -5.1645 -2.4476 27 6 0.3560 -4.8611 -3.2971 28 6 1.3606 -4.8503 -0.9546 29 1 -0.3633 -0.0997 1.0227 30 1 -0.3633 0.9357 -0.4251 31 1 -0.3633 -0.8360 -0.5978 32 1 1.6935 2.1314 -0.0004 33 1 4.5077 2.6448 0.8822 34 1 4.1849 -2.0809 0.0067 35 1 3.5622 -2.5587 -1.7877 36 1 3.9997 -4.1149 -1.0200 37 1 1.7217 -2.6720 -3.6957 38 1 3.4141 -2.7787 -4.2367 39 1 2.2039 -3.9204 -4.8693 40 1 4.6148 -5.4450 -2.3509 41 1 4.4695 -5.0148 -4.0790 42 1 1.8792 -10.0475 -3.1846 43 1 1.2572 -7.2195 -3.0543 44 1 2.2941 -7.0377 -1.6106 45 1 -0.4721 -5.4909 -2.9720 46 1 0.0828 -3.8125 -3.1795 47 1 0.5769 -5.0637 -4.3451 48 1 0.2936 -4.8102 -0.7357 49 1 1.8479 -5.5984 -0.3291 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982545938.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:39 Heat of formation + Delta-G solvation = -24.806193 kcal Electronic energy + Delta-G solvation = -31702.189750 eV Core-core repulsion = 27629.578771 eV Total energy + Delta-G solvation = -4072.610979 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.23997 -41.35750 -39.78928 -38.00844 -36.72476 -34.96288 -34.48333 -33.33762 -32.38377 -31.63122 -29.20587 -28.66524 -27.41464 -26.99613 -26.60693 -25.25238 -23.76915 -23.26517 -21.79441 -20.90349 -19.47669 -19.36701 -18.86909 -18.47573 -17.82733 -17.17043 -16.84680 -16.66167 -16.39588 -15.98179 -15.74549 -15.40030 -15.17205 -14.93356 -14.63506 -14.53417 -14.31502 -13.93633 -13.91498 -13.66901 -13.63768 -13.48118 -13.25525 -13.22066 -13.09962 -13.04495 -12.70818 -12.67267 -12.56351 -12.44418 -12.12299 -11.94409 -11.76899 -11.44205 -11.38578 -11.21315 -11.14545 -10.67969 -10.65648 -10.50585 -10.06117 -9.79880 -8.81385 -7.86618 -5.21027 -0.47582 0.05158 1.48035 1.50138 1.54192 1.56556 1.79760 2.38835 2.51560 2.67266 3.20927 3.33126 3.39845 3.51349 3.53633 3.61935 3.86468 3.89226 3.96427 4.14873 4.17173 4.18490 4.27081 4.36599 4.38762 4.51741 4.57843 4.66172 4.68577 4.70303 4.75089 4.81061 4.87800 4.90021 4.94995 4.99272 5.06646 5.14609 5.18536 5.20735 5.28033 5.35397 5.38327 5.48532 5.54167 5.60767 5.77600 6.24768 6.43629 6.53785 6.77264 6.95719 7.09916 7.78025 8.49691 9.25923 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.020873 B = 0.002863 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.135546 B = 9776.326179 C =10413.715719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.023 3.977 3 C -0.184 4.184 4 C 0.332 3.668 5 O -0.487 6.487 6 N -0.529 5.529 7 C 0.162 3.838 8 C -0.206 4.206 9 C 0.586 3.414 10 O -0.565 6.565 11 N -0.606 5.606 12 C 0.109 3.891 13 C -0.072 4.072 14 C -0.115 4.115 15 C 0.139 3.861 16 N -0.614 5.614 17 C -0.239 4.239 18 H 0.080 0.920 19 C -0.059 4.059 20 N -0.945 5.945 21 Si 0.972 3.028 22 H -0.277 1.277 23 H -0.297 1.297 24 H -0.279 1.279 25 C 0.190 3.810 26 C -0.083 4.083 27 C -0.110 4.110 28 C 0.125 3.875 29 H 0.086 0.914 30 H 0.100 0.900 31 H 0.059 0.941 32 H 0.178 0.822 33 H 0.426 0.574 34 H 0.175 0.825 35 H 0.100 0.900 36 H 0.087 0.913 37 H 0.061 0.939 38 H 0.070 0.930 39 H 0.050 0.950 40 H 0.025 0.975 41 H 0.051 0.949 42 H 0.247 0.753 43 H 0.041 0.959 44 H -0.003 1.003 45 H 0.050 0.950 46 H 0.064 0.936 47 H 0.050 0.950 48 H 0.077 0.923 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.765 23.478 6.486 24.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.015 3.985 3 C -0.204 4.204 4 C 0.154 3.846 5 O -0.298 6.298 6 N -0.249 5.249 7 C 0.004 3.996 8 C -0.212 4.212 9 C 0.376 3.624 10 O -0.445 6.445 11 N -0.338 5.338 12 C -0.013 4.013 13 C -0.074 4.074 14 C -0.172 4.172 15 C 0.014 3.986 16 N -0.338 5.338 17 C -0.368 4.368 18 H 0.097 0.903 19 C -0.253 4.253 20 N -0.593 5.593 21 Si 0.801 3.199 22 H -0.203 1.203 23 H -0.223 1.223 24 H -0.205 1.205 25 C 0.064 3.936 26 C -0.085 4.085 27 C -0.167 4.167 28 C 0.002 3.998 29 H 0.105 0.895 30 H 0.118 0.882 31 H 0.078 0.922 32 H 0.195 0.805 33 H 0.288 0.712 34 H 0.192 0.808 35 H 0.118 0.882 36 H 0.105 0.895 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.069 0.931 40 H 0.043 0.957 41 H 0.070 0.930 42 H 0.057 0.943 43 H 0.060 0.940 44 H 0.015 0.985 45 H 0.069 0.931 46 H 0.083 0.917 47 H 0.069 0.931 48 H 0.096 0.904 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.471 23.308 6.265 24.140 hybrid contribution -0.531 -1.546 0.017 1.635 sum -1.002 21.762 6.282 22.673 Atomic orbital electron populations 1.20898 0.88236 1.03937 1.03875 1.20474 0.97990 0.90588 0.89497 1.22160 0.93253 1.00001 1.05020 1.19576 0.87726 0.85303 0.92016 1.84672 1.75752 1.33169 1.36184 1.67237 1.42512 0.98750 1.16373 1.22956 0.89964 0.95757 0.90963 1.20728 0.95628 0.93610 1.11207 1.17763 0.83507 0.82641 0.78480 1.90775 1.27497 1.83287 1.42988 1.48926 1.24562 1.13667 1.46613 1.22918 0.86169 1.01964 0.90296 1.22234 0.94751 0.94976 0.95433 1.21581 1.01808 0.97487 0.96312 1.21655 0.93209 0.85455 0.98321 1.44689 1.24696 1.17154 1.47212 1.19314 1.19596 0.89572 1.08282 0.90252 1.25612 1.00951 0.98783 0.99925 1.70105 1.37039 1.20720 1.31439 0.85252 0.77622 0.78084 0.78965 1.20265 1.22328 1.20469 1.21013 0.89446 0.90913 0.92254 1.22326 0.95841 0.96536 0.93825 1.21521 0.95319 1.00887 0.99007 1.22409 0.99100 0.83107 0.95158 0.89537 0.88155 0.92184 0.80481 0.71162 0.80847 0.88205 0.89469 0.92042 0.91118 0.93097 0.95704 0.93046 0.94348 0.94018 0.98546 0.93102 0.91703 0.93091 0.90434 0.91434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.90 8.82 71.23 0.63 -1.27 16 2 C 0.02 0.43 5.94 -19.43 -0.12 0.31 16 3 C -0.18 -2.72 9.70 22.43 0.22 -2.50 16 4 C 0.33 5.85 7.74 84.82 0.66 6.51 16 5 O -0.49 -6.58 13.55 -88.02 -1.19 -7.78 16 6 N -0.53 -11.45 10.37 -307.81 -3.19 -14.64 16 7 C 0.16 3.44 8.96 85.04 0.76 4.20 16 8 C -0.21 -4.72 5.51 -20.00 -0.11 -4.83 16 9 C 0.59 16.48 6.95 86.72 0.60 17.08 16 10 O -0.57 -19.04 15.55 -3.98 -0.06 -19.10 16 11 N -0.61 -16.91 3.31 -812.11 -2.69 -19.60 16 12 C 0.11 2.73 4.58 86.52 0.40 3.13 16 13 C -0.07 -2.18 1.09 -50.67 -0.06 -2.23 16 14 C -0.11 -3.00 7.54 71.98 0.54 -2.45 16 15 C 0.14 5.23 6.48 86.60 0.56 5.79 16 16 N -0.61 -29.84 3.38 -694.90 -2.35 -32.19 16 17 C -0.24 -12.88 10.28 84.03 0.86 -12.02 16 18 H 0.08 4.10 7.84 -2.91 -0.02 4.08 16 19 C -0.06 -3.26 5.39 84.86 0.46 -2.80 16 20 N -0.95 -55.59 10.85 21.65 0.23 -55.36 16 21 Si 0.97 44.82 29.56 68.60 2.03 46.85 16 22 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 23 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 24 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 25 C 0.19 8.82 4.84 86.50 0.42 9.24 16 26 C -0.08 -2.87 1.08 -50.77 -0.05 -2.93 16 27 C -0.11 -3.53 7.46 71.98 0.54 -2.99 16 28 C 0.12 4.03 6.20 86.51 0.54 4.57 16 29 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.10 1.05 8.07 -2.39 -0.02 1.04 16 31 H 0.06 1.27 6.97 -2.38 -0.02 1.26 16 32 H 0.18 1.47 8.06 -2.91 -0.02 1.44 16 33 H 0.43 1.28 9.06 -74.06 -0.67 0.61 16 34 H 0.17 3.31 6.33 -2.91 -0.02 3.29 16 35 H 0.10 2.10 5.62 -2.39 -0.01 2.09 16 36 H 0.09 2.13 7.13 -2.39 -0.02 2.11 16 37 H 0.06 1.47 7.21 -2.39 -0.02 1.45 16 38 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 39 H 0.05 1.50 7.18 -2.39 -0.02 1.48 16 40 H 0.03 0.93 7.10 -2.39 -0.02 0.91 16 41 H 0.05 1.85 7.88 -2.39 -0.02 1.83 16 42 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 43 H 0.04 2.22 6.45 -2.39 -0.02 2.21 16 44 H 0.00 -0.17 7.10 -2.39 -0.02 -0.19 16 45 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 46 H 0.06 1.80 7.21 -2.39 -0.02 1.78 16 47 H 0.05 1.75 7.20 -2.39 -0.02 1.73 16 48 H 0.08 2.53 7.66 -2.39 -0.02 2.51 16 49 H 0.07 2.34 7.14 -2.38 -0.02 2.32 16 Total: -1.00 -71.33 380.40 -0.06 -71.39 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: 0.32 Total: 13.61 kcal Atomic # 6 Polarization: 9.96 SS G_CDS: 6.84 Total: 16.80 kcal Atomic # 7 Polarization: -113.78 SS G_CDS: -8.00 Total: -121.78 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: -1.25 Total: -26.88 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -71.33 -0.06 -71.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982545938.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.588 kcal (2) G-P(sol) polarization free energy of solvation -71.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds