Wall clock time and date at job start Wed Apr 1 2020 05:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35925 * 117.00178 * 2 1 4 4 C 1.38853 * 120.40252 * 359.97022 * 3 2 1 5 5 N 1.31879 * 121.00084 * 180.02562 * 4 3 2 6 6 C 1.31688 * 121.93726 * 359.68275 * 5 4 3 7 7 C 1.39524 * 120.69190 * 0.58444 * 6 5 4 8 8 C 1.47848 * 120.52742 * 179.72674 * 7 6 5 9 9 O 1.21556 * 119.99482 * 173.87869 * 8 7 6 10 10 N 1.34770 * 120.00592 * 353.88026 * 8 7 6 11 11 C 1.46501 * 120.00162 * 179.97438 * 10 8 7 12 12 C 1.51226 * 111.06402 * 68.34692 * 11 10 8 13 13 C 1.55690 * 104.60628 * 83.86327 * 12 11 10 14 14 C 1.56276 * 105.93729 * 7.24920 * 13 12 11 15 15 C 1.50522 * 101.75378 * 24.26719 * 14 13 12 16 16 H 1.08995 * 108.15206 * 66.91871 * 15 14 13 17 17 N 1.42709 * 128.13921 * 199.35575 * 15 14 13 18 18 C 1.36944 * 127.10181 * 331.02394 * 17 15 14 19 19 H 1.08001 * 120.00011 * 0.02562 * 18 17 15 20 20 C 1.38808 * 120.00040 * 180.02562 * 18 17 15 21 21 N 1.31622 * 120.00184 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00283 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46801 * 59.99736 * 22 20 18 24 24 H 1.48494 * 109.47453 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47010 * 300.00303 * 22 20 18 26 26 C 1.48703 * 106.10552 * 151.87057 * 17 15 14 27 27 C 1.52125 * 111.49076 * 288.52221 * 11 10 8 28 28 C 1.38842 * 120.40801 * 180.02562 * 3 2 1 29 29 C 1.50695 * 120.87729 * 359.94565 * 28 3 2 30 30 H 1.08993 * 109.46968 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46857 * 300.00573 * 1 2 3 32 32 H 1.08998 * 109.46946 * 60.00536 * 1 2 3 33 33 H 1.08004 * 119.50302 * 0.03306 * 4 3 2 34 34 H 1.08004 * 119.65124 * 180.31608 * 6 5 4 35 35 H 0.97004 * 120.00080 * 0.02562 * 10 8 7 36 36 H 1.08999 * 110.40877 * 325.07528 * 12 11 10 37 37 H 1.09004 * 110.50507 * 202.69283 * 12 11 10 38 38 H 1.09001 * 110.15778 * 248.13262 * 13 12 11 39 39 H 1.08998 * 110.22358 * 126.40477 * 13 12 11 40 40 H 1.08997 * 110.97361 * 266.14591 * 14 13 12 41 41 H 1.09005 * 110.96758 * 142.37889 * 14 13 12 42 42 H 0.96997 * 120.00573 * 180.02562 * 21 20 18 43 43 H 1.09000 * 109.74868 * 231.59008 * 26 17 15 44 44 H 1.09003 * 110.52236 * 110.05645 * 26 17 15 45 45 H 1.09006 * 111.14984 * 43.78353 * 27 11 10 46 46 H 1.09001 * 111.14989 * 167.96587 * 27 11 10 47 47 H 1.09004 * 109.47274 * 263.74885 * 29 28 3 48 48 H 1.08999 * 109.47391 * 23.75362 * 29 28 3 49 49 H 1.09001 * 109.47279 * 143.75495 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2111 0.0000 4 6 1.2981 2.3809 -0.0006 5 7 1.8846 3.5621 -0.0011 6 6 3.1953 3.6891 0.0051 7 6 4.0199 2.5636 0.0003 8 6 5.4911 2.7105 0.0013 9 8 6.1997 1.7288 0.1094 10 7 6.0465 3.9326 -0.1176 11 6 7.5042 4.0781 -0.1161 12 6 8.1112 3.4830 -1.3669 13 6 7.9907 4.6087 -2.4356 14 6 7.4794 5.8726 -1.6718 15 6 7.9338 5.5859 -0.2658 16 1 9.0234 5.6108 -0.2494 17 7 7.4571 6.1626 0.9494 18 6 6.9266 7.4139 1.1176 19 1 6.8349 8.0796 0.2722 20 6 6.5069 7.8265 2.3747 21 7 6.6192 7.0154 3.4052 22 14 5.7827 9.5331 2.6041 23 1 4.5713 9.6746 1.7570 24 1 5.4148 9.7272 4.0296 25 1 6.7858 10.5538 2.2078 26 6 7.6713 5.1370 2.0046 27 6 8.0881 3.8251 1.2657 28 6 3.4321 1.2936 -0.0005 29 6 4.2810 0.0484 0.0001 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 0.2197 2.3226 -0.0006 34 1 3.6366 4.6749 0.0096 35 1 5.4810 4.7161 -0.2035 36 1 7.5512 2.6013 -1.6786 37 1 9.1577 3.2282 -1.1995 38 1 7.2754 4.3204 -3.2059 39 1 8.9641 4.8087 -2.8835 40 1 6.3931 5.9466 -1.7233 41 1 7.9493 6.7777 -2.0568 42 1 6.3255 7.3036 4.2836 43 1 6.7448 4.9770 2.5562 44 1 8.4624 5.4494 2.6862 45 1 7.6334 2.9503 1.7306 46 1 9.1727 3.7251 1.2221 47 1 4.5785 -0.1880 1.0218 48 1 3.7083 -0.7819 -0.4130 49 1 5.1702 0.2146 -0.6079 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000991384458.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:15 Heat of formation + Delta-G solvation = 9.615630 kcal Electronic energy + Delta-G solvation = -31959.039213 eV Core-core repulsion = 27887.920876 eV Total energy + Delta-G solvation = -4071.118336 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.11267 -40.31005 -38.58888 -37.64455 -34.50980 -33.74186 -33.17044 -31.86622 -30.71256 -29.64781 -27.89916 -27.71262 -26.96300 -25.81259 -24.17243 -23.86938 -22.37876 -20.99021 -20.47524 -19.63482 -18.87745 -18.24371 -17.35952 -16.51043 -16.38648 -16.31769 -16.16116 -15.69310 -14.99291 -14.64804 -14.53138 -14.21095 -14.04035 -13.92165 -13.82959 -13.23059 -12.96184 -12.72930 -12.66223 -12.62287 -12.35883 -12.25708 -11.98921 -11.77945 -11.67181 -11.42650 -11.35875 -11.02445 -10.91358 -10.81492 -10.49520 -10.31889 -10.05426 -9.98738 -9.89089 -9.72499 -9.47410 -9.38765 -9.03162 -8.67989 -8.55047 -8.48544 -6.89774 -5.76554 -3.12484 0.63324 1.17535 2.86927 3.07240 3.37773 3.42845 3.44065 3.58282 3.86090 4.29205 4.42664 4.43506 4.60692 4.69392 4.75079 4.84685 4.89864 5.12849 5.14151 5.21709 5.25740 5.28871 5.45568 5.57163 5.58994 5.70301 5.77225 5.80919 5.85571 5.93443 5.96578 6.11256 6.13734 6.20122 6.25370 6.30222 6.35887 6.41777 6.46357 6.52836 6.64277 6.80271 6.88313 6.98388 7.15198 7.49747 7.59003 7.76415 7.80788 7.97393 8.18464 8.58778 9.11488 9.77630 10.45259 11.34551 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010871 B = 0.003946 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2575.080763 B = 7094.634641 C = 8570.133347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.307 6.307 3 C 0.059 3.941 4 C 0.037 3.963 5 N -0.456 5.456 6 C 0.108 3.892 7 C -0.148 4.148 8 C 0.563 3.437 9 O -0.535 6.535 10 N -0.679 5.679 11 C 0.133 3.867 12 C -0.112 4.112 13 C -0.117 4.117 14 C -0.115 4.115 15 C 0.158 3.842 16 H 0.024 0.976 17 N -0.584 5.584 18 C -0.236 4.236 19 H 0.079 0.921 20 C -0.001 4.001 21 N -0.917 5.917 22 Si 0.909 3.091 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.286 1.286 26 C 0.178 3.822 27 C -0.139 4.139 28 C -0.014 4.014 29 C -0.110 4.110 30 H 0.102 0.898 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.159 0.841 34 H 0.165 0.835 35 H 0.403 0.597 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.058 0.942 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.254 0.746 43 H 0.067 0.933 44 H 0.033 0.967 45 H 0.068 0.932 46 H 0.065 0.935 47 H 0.078 0.922 48 H 0.063 0.937 49 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.627 -12.422 -9.588 17.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.220 6.220 3 C 0.012 3.988 4 C -0.120 4.120 5 N -0.165 5.165 6 C -0.051 4.051 7 C -0.154 4.154 8 C 0.348 3.652 9 O -0.414 6.414 10 N -0.330 5.330 11 C 0.045 3.955 12 C -0.150 4.150 13 C -0.155 4.155 14 C -0.153 4.153 15 C 0.048 3.952 16 H 0.041 0.959 17 N -0.307 5.307 18 C -0.363 4.363 19 H 0.097 0.903 20 C -0.198 4.198 21 N -0.563 5.563 22 Si 0.739 3.261 23 H -0.210 1.210 24 H -0.217 1.217 25 H -0.212 1.212 26 C 0.054 3.946 27 C -0.178 4.178 28 C -0.023 4.023 29 C -0.166 4.166 30 H 0.121 0.879 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.176 0.824 34 H 0.182 0.818 35 H 0.240 0.760 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.064 0.936 43 H 0.085 0.915 44 H 0.052 0.948 45 H 0.087 0.913 46 H 0.084 0.916 47 H 0.097 0.903 48 H 0.082 0.918 49 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -7.640 -12.396 -9.301 17.278 hybrid contribution -0.532 0.855 0.343 1.064 sum -8.171 -11.540 -8.957 16.739 Atomic orbital electron populations 1.23116 0.78186 1.04277 1.01549 1.86080 1.21344 1.25684 1.88846 1.19750 0.92385 0.85913 1.00760 1.23050 1.00564 0.87199 1.01219 1.67557 1.12061 1.25791 1.11133 1.23001 0.88579 0.98588 0.94978 1.20862 0.95432 0.93544 1.05519 1.17796 0.86252 0.83873 0.77250 1.90686 1.62885 1.37534 1.50326 1.45626 1.07665 1.07783 1.71900 1.21531 0.79079 1.00493 0.94406 1.21876 1.00860 0.97884 0.94416 1.22822 1.00572 0.94600 0.97524 1.21838 1.00861 0.97133 0.95475 1.20849 0.96476 0.89410 0.88472 0.95900 1.43545 1.72195 1.13360 1.01606 1.18966 1.34031 0.89086 0.94266 0.90340 1.24788 1.01201 0.98193 0.95663 1.69909 1.51945 1.35013 0.99457 0.86257 0.79031 0.83907 0.76893 1.21044 1.21661 1.21212 1.21932 1.00263 0.82999 0.89419 1.22792 0.99550 1.00348 0.95083 1.19814 0.90642 0.95936 0.95902 1.20888 0.99458 0.92337 1.03964 0.87936 0.92396 0.92467 0.82374 0.81756 0.75995 0.91202 0.91082 0.92269 0.91933 0.91649 0.91707 0.93599 0.91502 0.94833 0.91348 0.91601 0.90307 0.91842 0.88283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.82 101.05 0.99 1.15 16 2 O -0.31 -3.39 9.57 -19.50 -0.19 -3.58 16 3 C 0.06 0.77 6.68 -39.13 -0.26 0.51 16 4 C 0.04 0.47 10.21 -17.30 -0.18 0.29 16 5 N -0.46 -6.83 10.34 -12.79 -0.13 -6.97 16 6 C 0.11 1.65 10.69 -17.13 -0.18 1.47 16 7 C -0.15 -2.32 5.89 -104.85 -0.62 -2.94 16 8 C 0.56 9.59 7.05 -12.33 -0.09 9.50 16 9 O -0.54 -9.81 11.65 5.32 0.06 -9.75 16 10 N -0.68 -11.67 4.35 -47.51 -0.21 -11.88 16 11 C 0.13 2.34 0.40 -130.71 -0.05 2.28 16 12 C -0.11 -1.70 6.03 -26.19 -0.16 -1.85 16 13 C -0.12 -1.59 6.93 -23.54 -0.16 -1.76 16 14 C -0.11 -1.84 6.46 -26.21 -0.17 -2.00 16 15 C 0.16 3.05 2.64 -68.71 -0.18 2.87 16 16 H 0.02 0.47 7.98 -51.93 -0.41 0.06 16 17 N -0.58 -13.69 3.08 -163.16 -0.50 -14.20 16 18 C -0.24 -6.08 10.29 -15.06 -0.15 -6.24 16 19 H 0.08 1.96 7.83 -52.49 -0.41 1.55 16 20 C 0.00 -0.04 5.49 -17.43 -0.10 -0.13 16 21 N -0.92 -25.89 10.49 55.49 0.58 -25.31 16 22 Si 0.91 21.36 29.55 -169.99 -5.02 16.33 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 26 C 0.18 4.17 5.33 -1.09 -0.01 4.16 16 27 C -0.14 -2.69 6.21 -25.44 -0.16 -2.85 16 28 C -0.01 -0.20 5.97 -103.76 -0.62 -0.82 16 29 C -0.11 -1.49 8.70 36.00 0.31 -1.18 16 30 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.34 7.67 -51.93 -0.40 -0.06 16 32 H 0.06 0.31 7.67 -51.93 -0.40 -0.09 16 33 H 0.16 1.46 6.30 -52.48 -0.33 1.13 16 34 H 0.17 2.46 6.46 -52.48 -0.34 2.12 16 35 H 0.40 6.98 5.87 -40.82 -0.24 6.74 16 36 H 0.07 1.10 6.84 -51.93 -0.36 0.75 16 37 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.06 1.05 7.35 -51.93 -0.38 0.67 16 41 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 42 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 43 H 0.07 1.76 6.97 -51.93 -0.36 1.40 16 44 H 0.03 0.86 8.00 -51.93 -0.42 0.45 16 45 H 0.07 1.37 7.19 -51.93 -0.37 0.99 16 46 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 47 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 48 H 0.06 0.76 7.44 -51.93 -0.39 0.37 16 49 H 0.10 1.45 5.95 -51.93 -0.31 1.14 16 LS Contribution 379.99 15.07 5.73 5.73 Total: -1.00 -30.24 379.99 -8.67 -38.90 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -7.21 Total: 8.26 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: -1.78 Total: 2.45 kcal Atomic # 7 Polarization: -58.09 SS G_CDS: -0.26 Total: -58.35 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: -0.12 Total: -13.33 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.24 -8.67 -38.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991384458.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.520 kcal (2) G-P(sol) polarization free energy of solvation -30.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds