Wall clock time and date at job start Wed Apr 1 2020 05:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35925 * 117.00178 * 2 1 4 4 C 1.38853 * 120.40252 * 359.97022 * 3 2 1 5 5 N 1.31879 * 121.00084 * 180.02562 * 4 3 2 6 6 C 1.31688 * 121.93726 * 359.68275 * 5 4 3 7 7 C 1.39524 * 120.69190 * 0.58444 * 6 5 4 8 8 C 1.47848 * 120.52742 * 179.72674 * 7 6 5 9 9 O 1.21556 * 119.99482 * 173.87869 * 8 7 6 10 10 N 1.34770 * 120.00592 * 353.88026 * 8 7 6 11 11 C 1.46501 * 120.00162 * 179.97438 * 10 8 7 12 12 C 1.51226 * 111.06402 * 68.34692 * 11 10 8 13 13 C 1.55690 * 104.60628 * 83.86327 * 12 11 10 14 14 C 1.56276 * 105.93729 * 7.24920 * 13 12 11 15 15 C 1.50522 * 101.75378 * 24.26719 * 14 13 12 16 16 H 1.08995 * 108.15206 * 66.91871 * 15 14 13 17 17 N 1.42709 * 128.13921 * 199.35575 * 15 14 13 18 18 C 1.36944 * 127.10181 * 331.02394 * 17 15 14 19 19 H 1.08001 * 120.00011 * 0.02562 * 18 17 15 20 20 C 1.38808 * 120.00040 * 180.02562 * 18 17 15 21 21 N 1.31622 * 120.00184 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00283 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46801 * 59.99736 * 22 20 18 24 24 H 1.48494 * 109.47453 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47010 * 300.00303 * 22 20 18 26 26 C 1.48703 * 106.10552 * 151.87057 * 17 15 14 27 27 C 1.52125 * 111.49076 * 288.52221 * 11 10 8 28 28 C 1.38842 * 120.40801 * 180.02562 * 3 2 1 29 29 C 1.50695 * 120.87729 * 359.94565 * 28 3 2 30 30 H 1.08993 * 109.46968 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46857 * 300.00573 * 1 2 3 32 32 H 1.08998 * 109.46946 * 60.00536 * 1 2 3 33 33 H 1.08004 * 119.50302 * 0.03306 * 4 3 2 34 34 H 1.08004 * 119.65124 * 180.31608 * 6 5 4 35 35 H 0.97004 * 120.00080 * 0.02562 * 10 8 7 36 36 H 1.08999 * 110.40877 * 325.07528 * 12 11 10 37 37 H 1.09004 * 110.50507 * 202.69283 * 12 11 10 38 38 H 1.09001 * 110.15778 * 248.13262 * 13 12 11 39 39 H 1.08998 * 110.22358 * 126.40477 * 13 12 11 40 40 H 1.08997 * 110.97361 * 266.14591 * 14 13 12 41 41 H 1.09005 * 110.96758 * 142.37889 * 14 13 12 42 42 H 0.96997 * 120.00573 * 180.02562 * 21 20 18 43 43 H 1.09000 * 109.74868 * 231.59008 * 26 17 15 44 44 H 1.09003 * 110.52236 * 110.05645 * 26 17 15 45 45 H 1.09006 * 111.14984 * 43.78353 * 27 11 10 46 46 H 1.09001 * 111.14989 * 167.96587 * 27 11 10 47 47 H 1.09004 * 109.47274 * 263.74885 * 29 28 3 48 48 H 1.08999 * 109.47391 * 23.75362 * 29 28 3 49 49 H 1.09001 * 109.47279 * 143.75495 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2111 0.0000 4 6 1.2981 2.3809 -0.0006 5 7 1.8846 3.5621 -0.0011 6 6 3.1953 3.6891 0.0051 7 6 4.0199 2.5636 0.0003 8 6 5.4911 2.7105 0.0013 9 8 6.1997 1.7288 0.1094 10 7 6.0465 3.9326 -0.1176 11 6 7.5042 4.0781 -0.1161 12 6 8.1112 3.4830 -1.3669 13 6 7.9907 4.6087 -2.4356 14 6 7.4794 5.8726 -1.6718 15 6 7.9338 5.5859 -0.2658 16 1 9.0234 5.6108 -0.2494 17 7 7.4571 6.1626 0.9494 18 6 6.9266 7.4139 1.1176 19 1 6.8349 8.0796 0.2722 20 6 6.5069 7.8265 2.3747 21 7 6.6192 7.0154 3.4052 22 14 5.7827 9.5331 2.6041 23 1 4.5713 9.6746 1.7570 24 1 5.4148 9.7272 4.0296 25 1 6.7858 10.5538 2.2078 26 6 7.6713 5.1370 2.0046 27 6 8.0881 3.8251 1.2657 28 6 3.4321 1.2936 -0.0005 29 6 4.2810 0.0484 0.0001 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 0.2197 2.3226 -0.0006 34 1 3.6366 4.6749 0.0096 35 1 5.4810 4.7161 -0.2035 36 1 7.5512 2.6013 -1.6786 37 1 9.1577 3.2282 -1.1995 38 1 7.2754 4.3204 -3.2059 39 1 8.9641 4.8087 -2.8835 40 1 6.3931 5.9466 -1.7233 41 1 7.9493 6.7777 -2.0568 42 1 6.3255 7.3036 4.2836 43 1 6.7448 4.9770 2.5562 44 1 8.4624 5.4494 2.6862 45 1 7.6334 2.9503 1.7306 46 1 9.1727 3.7251 1.2221 47 1 4.5785 -0.1880 1.0218 48 1 3.7083 -0.7819 -0.4130 49 1 5.1702 0.2146 -0.6079 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000991384458.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:14 Heat of formation + Delta-G solvation = -8.871975 kcal Electronic energy + Delta-G solvation = -31959.840895 eV Core-core repulsion = 27887.920876 eV Total energy + Delta-G solvation = -4071.920019 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.31713 -41.58809 -39.75509 -38.79459 -36.19953 -34.87887 -34.47477 -33.65170 -32.08931 -31.08724 -28.89221 -28.53259 -28.47066 -27.28164 -25.94390 -25.07782 -23.47387 -22.37365 -21.92338 -21.21128 -20.23420 -19.36559 -18.44665 -18.30302 -17.57896 -17.37328 -17.22467 -16.99342 -16.38535 -16.26629 -15.74134 -15.69915 -15.41081 -15.17739 -15.13304 -14.46003 -14.15173 -14.07929 -13.93884 -13.83539 -13.74901 -13.50666 -13.12168 -13.02230 -12.93429 -12.83810 -12.73815 -12.57079 -12.36283 -12.18101 -12.08955 -12.01050 -11.77759 -11.54455 -11.33432 -11.16170 -10.84075 -10.67623 -10.63701 -10.33181 -9.88549 -9.52913 -8.85282 -7.81284 -5.17528 -0.48594 0.08366 1.49468 1.50841 1.56844 1.82369 1.94013 2.38216 2.52306 2.69604 3.09377 3.28475 3.38702 3.42294 3.63286 3.67032 3.77565 3.91639 4.03546 4.12422 4.12816 4.31302 4.36728 4.40629 4.42026 4.44682 4.54985 4.61035 4.64147 4.66663 4.76225 4.77225 4.82544 4.96163 4.98289 5.05960 5.10494 5.13937 5.17020 5.25383 5.29952 5.43024 5.51585 5.58096 5.63080 5.69972 5.81091 6.13339 6.21138 6.58860 6.72539 7.07608 7.22756 7.80188 8.50878 9.29203 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010871 B = 0.003946 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2575.080763 B = 7094.634641 C = 8570.133347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.316 6.316 3 C 0.069 3.931 4 C 0.042 3.958 5 N -0.472 5.472 6 C 0.097 3.903 7 C -0.161 4.161 8 C 0.563 3.437 9 O -0.551 6.551 10 N -0.681 5.681 11 C 0.141 3.859 12 C -0.107 4.107 13 C -0.103 4.103 14 C -0.111 4.111 15 C 0.146 3.854 16 H 0.021 0.979 17 N -0.596 5.596 18 C -0.233 4.233 19 H 0.088 0.912 20 C -0.059 4.059 21 N -0.949 5.949 22 Si 0.970 3.030 23 H -0.274 1.274 24 H -0.302 1.302 25 H -0.280 1.280 26 C 0.190 3.810 27 C -0.127 4.127 28 C -0.030 4.030 29 C -0.101 4.101 30 H 0.126 0.874 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.195 0.805 34 H 0.159 0.841 35 H 0.401 0.599 36 H 0.066 0.934 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.085 0.915 40 H 0.062 0.938 41 H 0.072 0.928 42 H 0.244 0.756 43 H 0.030 0.970 44 H -0.001 1.001 45 H 0.059 0.941 46 H 0.082 0.918 47 H 0.071 0.929 48 H 0.079 0.921 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.953 -13.209 -11.943 19.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.228 6.228 3 C 0.021 3.979 4 C -0.115 4.115 5 N -0.182 5.182 6 C -0.061 4.061 7 C -0.166 4.166 8 C 0.350 3.650 9 O -0.431 6.431 10 N -0.331 5.331 11 C 0.053 3.947 12 C -0.145 4.145 13 C -0.141 4.141 14 C -0.149 4.149 15 C 0.037 3.963 16 H 0.038 0.962 17 N -0.319 5.319 18 C -0.362 4.362 19 H 0.106 0.894 20 C -0.252 4.252 21 N -0.598 5.598 22 Si 0.799 3.201 23 H -0.200 1.200 24 H -0.229 1.229 25 H -0.206 1.206 26 C 0.065 3.935 27 C -0.166 4.166 28 C -0.039 4.039 29 C -0.158 4.158 30 H 0.144 0.856 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.212 0.788 34 H 0.176 0.824 35 H 0.238 0.762 36 H 0.085 0.915 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.103 0.897 40 H 0.081 0.919 41 H 0.091 0.909 42 H 0.053 0.947 43 H 0.048 0.952 44 H 0.017 0.983 45 H 0.078 0.922 46 H 0.100 0.900 47 H 0.090 0.910 48 H 0.098 0.902 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.961 -13.191 -11.707 19.782 hybrid contribution -0.209 0.999 1.083 1.488 sum -9.170 -12.192 -10.624 18.590 Atomic orbital electron populations 1.23515 0.75624 1.06394 1.02782 1.86087 1.23913 1.24511 1.88270 1.19726 0.91857 0.86903 0.99402 1.23597 1.02143 0.86296 0.99472 1.67580 1.11712 1.27144 1.11751 1.22912 0.89030 0.98327 0.95873 1.20729 0.94425 0.94337 1.07092 1.18008 0.86967 0.83425 0.76605 1.90672 1.63476 1.37878 1.51093 1.45639 1.07459 1.07923 1.72096 1.21506 0.79525 0.99349 0.94314 1.21873 1.01196 0.98240 0.93215 1.22757 1.02199 0.92263 0.96890 1.21858 1.00875 0.98881 0.93285 1.21077 0.96138 0.90277 0.88810 0.96180 1.43653 1.72056 1.12885 1.03315 1.19350 1.32473 0.90030 0.94324 0.89389 1.25524 1.02560 1.01451 0.95684 1.70133 1.53689 1.36538 0.99410 0.85281 0.78590 0.80201 0.76041 1.20033 1.22862 1.20617 1.21590 0.97279 0.85096 0.89501 1.22640 1.00559 0.97490 0.95938 1.19999 0.91856 0.95676 0.96364 1.20782 0.99064 0.92601 1.03308 0.85572 0.91367 0.90923 0.78849 0.82357 0.76194 0.91488 0.89892 0.90595 0.89681 0.91885 0.90938 0.94676 0.95150 0.98279 0.92186 0.89996 0.91044 0.90173 0.89571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.82 113.37 1.11 1.22 16 2 O -0.32 -6.14 9.57 -92.70 -0.89 -7.03 16 3 C 0.07 1.67 6.68 22.56 0.15 1.82 16 4 C 0.04 0.98 10.21 84.83 0.87 1.85 16 5 N -0.47 -13.74 10.34 -194.39 -2.01 -15.75 16 6 C 0.10 3.01 10.69 85.02 0.91 3.92 16 7 C -0.16 -5.06 5.89 -20.01 -0.12 -5.18 16 8 C 0.56 19.45 7.05 86.79 0.61 20.06 16 9 O -0.55 -20.36 11.65 -3.89 -0.05 -20.41 16 10 N -0.68 -23.65 4.35 -422.50 -1.84 -25.49 16 11 C 0.14 4.91 0.40 4.32 0.00 4.91 16 12 C -0.11 -3.02 6.03 30.94 0.19 -2.84 16 13 C -0.10 -2.49 6.93 32.66 0.23 -2.26 16 14 C -0.11 -3.33 6.46 30.93 0.20 -3.13 16 15 C 0.15 5.54 2.64 46.47 0.12 5.67 16 16 H 0.02 0.81 7.98 -2.39 -0.02 0.79 16 17 N -0.60 -28.55 3.08 -670.11 -2.06 -30.62 16 18 C -0.23 -12.20 10.29 84.03 0.86 -11.33 16 19 H 0.09 4.35 7.83 -2.91 -0.02 4.33 16 20 C -0.06 -3.23 5.49 84.86 0.47 -2.76 16 21 N -0.95 -56.04 10.49 21.65 0.23 -55.82 16 22 Si 0.97 44.69 29.55 68.60 2.03 46.72 16 23 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 24 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 25 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 26 C 0.19 9.35 5.33 87.08 0.46 9.82 16 27 C -0.13 -5.04 6.21 31.43 0.20 -4.84 16 28 C -0.03 -0.85 5.97 -19.31 -0.12 -0.97 16 29 C -0.10 -2.70 8.70 71.23 0.62 -2.08 16 30 H 0.13 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.07 0.55 7.67 -2.39 -0.02 0.54 16 32 H 0.07 0.52 7.67 -2.39 -0.02 0.50 16 33 H 0.19 2.91 6.30 -2.91 -0.02 2.89 16 34 H 0.16 4.93 6.46 -2.91 -0.02 4.91 16 35 H 0.40 14.21 5.87 -92.71 -0.54 13.66 16 36 H 0.07 1.98 6.84 -2.39 -0.02 1.97 16 37 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.06 1.93 7.35 -2.39 -0.02 1.91 16 41 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 42 H 0.24 14.29 8.31 -92.71 -0.77 13.52 16 43 H 0.03 1.70 6.97 -2.39 -0.02 1.68 16 44 H 0.00 -0.06 8.00 -2.39 -0.02 -0.07 16 45 H 0.06 2.47 7.19 -2.38 -0.02 2.45 16 46 H 0.08 2.95 8.14 -2.39 -0.02 2.93 16 47 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 48 H 0.08 1.81 7.44 -2.39 -0.02 1.79 16 49 H 0.09 2.52 5.95 -2.39 -0.01 2.51 16 Total: -1.00 -67.56 379.99 2.61 -64.95 By element: Atomic # 1 Polarization: 29.16 SS G_CDS: 0.44 Total: 29.59 kcal Atomic # 6 Polarization: 7.09 SS G_CDS: 6.77 Total: 13.86 kcal Atomic # 7 Polarization: -121.99 SS G_CDS: -5.68 Total: -127.67 kcal Atomic # 8 Polarization: -26.50 SS G_CDS: -0.93 Total: -27.44 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -67.56 2.61 -64.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991384458.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.075 kcal (2) G-P(sol) polarization free energy of solvation -67.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds