Wall clock time and date at job start Wed Apr 1 2020 05:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.40200 * 120.36381 * 2 1 4 4 C 1.35353 * 119.94353 * 179.76908 * 3 2 1 5 5 N 1.35757 * 120.70362 * 0.53081 * 4 3 2 6 6 C 1.46505 * 119.62556 * 179.71423 * 5 4 3 7 7 C 1.50695 * 109.47069 * 269.73192 * 6 5 4 8 8 O 1.21276 * 120.00420 * 0.02562 * 7 6 5 9 9 N 1.34782 * 119.99677 * 179.97438 * 7 6 5 10 10 C 1.46498 * 119.99888 * 180.02562 * 9 7 6 11 11 C 1.51223 * 111.06848 * 291.65982 * 10 9 7 12 12 C 1.55692 * 104.61320 * 276.12892 * 11 10 9 13 13 C 1.55029 * 105.77039 * 352.87300 * 12 11 10 14 14 C 1.50521 * 102.34536 * 335.48451 * 13 12 11 15 15 H 1.08999 * 108.14173 * 293.46568 * 14 13 12 16 16 N 1.42711 * 128.15269 * 161.02938 * 14 13 12 17 17 C 1.36936 * 127.10136 * 28.95398 * 16 14 13 18 18 H 1.08003 * 119.99941 * 342.47205 * 17 16 14 19 19 C 1.38808 * 119.99669 * 162.46238 * 17 16 14 20 20 N 1.31609 * 120.00339 * 329.62550 * 19 17 16 21 21 Si 1.86803 * 119.99574 * 149.89885 * 19 17 16 22 22 H 1.48495 * 109.47051 * 179.72587 * 21 19 17 23 23 H 1.48505 * 109.47166 * 299.72612 * 21 19 17 24 24 H 1.48498 * 109.47219 * 59.72631 * 21 19 17 25 25 C 1.49293 * 105.79542 * 209.21894 * 16 14 13 26 26 C 1.52124 * 111.08882 * 71.70036 * 10 9 7 27 27 C 1.34662 * 120.74981 * 359.44988 * 5 4 3 28 28 O 1.22060 * 119.98482 * 180.26982 * 27 5 4 29 29 C 1.36396 * 120.36910 * 180.02562 * 2 1 3 30 30 H 1.08997 * 109.47194 * 269.97032 * 1 2 3 31 31 H 1.09000 * 109.47412 * 29.98032 * 1 2 3 32 32 H 1.09003 * 109.46751 * 149.97553 * 1 2 3 33 33 H 1.07998 * 120.02794 * 0.03063 * 3 2 1 34 34 H 1.08000 * 119.64715 * 180.24951 * 4 3 2 35 35 H 1.08997 * 109.46707 * 149.72946 * 6 5 4 36 36 H 1.08998 * 109.46580 * 29.73361 * 6 5 4 37 37 H 0.97001 * 120.00061 * 0.02562 * 9 7 6 38 38 H 1.09002 * 110.40555 * 34.91063 * 11 10 9 39 39 H 1.08999 * 110.41235 * 157.22784 * 11 10 9 40 40 H 1.09003 * 110.15842 * 111.86262 * 12 11 10 41 41 H 1.08991 * 110.16041 * 233.56077 * 12 11 10 42 42 H 1.09004 * 110.93434 * 217.05937 * 13 12 11 43 43 H 1.09005 * 110.45545 * 93.68887 * 13 12 11 44 44 H 0.97004 * 120.00334 * 354.15693 * 20 19 17 45 45 H 1.09000 * 110.04894 * 127.65739 * 25 16 14 46 46 H 1.08996 * 110.04845 * 249.14054 * 25 16 14 47 47 H 1.09000 * 111.15143 * 191.84970 * 26 10 9 48 48 H 1.09001 * 111.15308 * 316.07558 * 26 10 9 49 49 H 1.08006 * 120.34784 * 359.95085 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2157 1.2097 0.0000 4 6 3.5692 1.1998 0.0047 5 7 4.2538 0.0275 -0.0013 6 6 5.7188 0.0443 -0.0024 7 6 6.2200 0.0502 -1.4235 8 8 5.4314 0.0416 -2.3448 9 7 7.5449 0.0659 -1.6706 10 6 8.0323 0.0722 -3.0522 11 6 7.7375 -1.2427 -3.7385 12 6 8.9108 -2.1763 -3.3194 13 6 9.9143 -1.2747 -2.5554 14 6 9.6061 0.0907 -3.1088 15 1 9.8876 0.1017 -4.1617 16 7 9.9295 1.3627 -2.5483 17 6 10.9956 1.6637 -1.7433 18 1 11.5331 0.8730 -1.2409 19 6 11.3854 2.9850 -1.5731 20 7 11.2002 3.8558 -2.5423 21 14 12.1799 3.5253 0.0289 22 1 12.5067 4.9720 -0.0440 23 1 11.2395 3.2863 1.1531 24 1 13.4250 2.7472 0.2511 25 6 8.8620 2.2959 -3.0156 26 6 7.7781 1.4171 -3.7162 27 6 3.6017 -1.1507 -0.0010 28 8 4.2313 -2.1964 -0.0015 29 6 2.1966 -1.1768 -0.0005 30 1 -0.3633 -0.0005 1.0276 31 1 -0.3634 0.8901 -0.5135 32 1 -0.3633 -0.8898 -0.5142 33 1 1.6821 2.1487 0.0005 34 1 4.1103 2.1344 0.0088 35 1 6.0926 -0.8414 0.5112 36 1 6.0721 0.9384 0.5113 37 1 8.1757 0.0732 -0.9338 38 1 6.7869 -1.6478 -3.3916 39 1 7.7217 -1.1116 -4.8205 40 1 8.5455 -2.9685 -2.6660 41 1 9.3827 -2.6062 -4.2028 42 1 10.9423 -1.5622 -2.7761 43 1 9.7216 -1.3138 -1.4832 44 1 10.8703 3.5588 -3.4048 45 1 8.4269 2.8216 -2.1656 46 1 9.2760 3.0114 -3.7260 47 1 7.9451 1.3624 -4.7919 48 1 6.7755 1.7823 -3.4939 49 1 1.6683 -2.1188 -0.0001 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992270003.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:13 Heat of formation + Delta-G solvation = 4.449390 kcal Electronic energy + Delta-G solvation = -31663.812885 eV Core-core repulsion = 27592.470523 eV Total energy + Delta-G solvation = -4071.342361 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.57909 -40.56173 -38.26689 -37.07944 -35.32822 -34.77270 -33.27877 -31.97950 -30.69206 -29.97377 -29.41335 -27.17235 -26.87147 -25.81283 -23.97254 -23.81567 -22.06660 -21.03592 -20.63185 -19.72954 -18.94147 -17.70800 -17.60558 -17.30619 -17.13176 -16.13233 -15.79782 -15.29992 -15.16852 -14.69415 -14.59393 -14.32798 -14.23125 -13.89732 -13.82231 -13.72002 -13.45676 -12.95458 -12.82777 -12.76061 -12.50931 -12.21255 -12.05676 -11.89425 -11.85602 -11.78486 -11.48265 -10.98632 -10.88058 -10.77646 -10.57092 -10.38688 -10.20828 -10.17208 -10.08363 -10.00435 -9.74732 -9.58866 -9.34346 -8.70738 -8.46577 -8.05673 -7.03062 -6.18613 -3.24972 0.71302 1.79285 2.40314 2.75569 3.32911 3.43489 3.45438 3.64254 3.68438 4.37487 4.38255 4.45744 4.54710 4.61304 4.78953 4.85854 5.01383 5.06518 5.07608 5.14611 5.22838 5.26468 5.29765 5.37989 5.47855 5.56544 5.62308 5.63460 5.71441 5.80994 5.88031 5.90968 5.94115 6.10323 6.17574 6.22402 6.22920 6.32562 6.38781 6.40146 6.44912 6.58798 6.74221 6.85091 6.98590 6.99048 7.02604 7.72044 7.78249 7.99852 8.36088 8.42304 8.93398 9.70641 10.32055 11.11980 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013355 B = 0.003263 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.137811 B = 8580.098554 C = 9543.076797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.015 3.985 3 C -0.234 4.234 4 C 0.150 3.850 5 N -0.478 5.478 6 C 0.067 3.933 7 C 0.502 3.498 8 O -0.535 6.535 9 N -0.686 5.686 10 C 0.133 3.867 11 C -0.111 4.111 12 C -0.117 4.117 13 C -0.112 4.112 14 C 0.160 3.840 15 H 0.022 0.978 16 N -0.582 5.582 17 C -0.343 4.343 18 H 0.067 0.933 19 C -0.021 4.021 20 N -0.907 5.907 21 Si 1.059 2.941 22 H -0.286 1.286 23 H -0.294 1.294 24 H -0.293 1.293 25 C 0.143 3.857 26 C -0.125 4.125 27 C 0.522 3.478 28 O -0.554 6.554 29 C -0.251 4.251 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.144 0.856 34 H 0.161 0.839 35 H 0.127 0.873 36 H 0.121 0.879 37 H 0.405 0.595 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.061 0.939 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.269 0.731 45 H 0.036 0.964 46 H 0.043 0.957 47 H 0.071 0.929 48 H 0.069 0.931 49 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.795 -5.759 5.184 18.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.012 3.988 3 C -0.257 4.257 4 C 0.023 3.977 5 N -0.188 5.188 6 C -0.058 4.058 7 C 0.286 3.714 8 O -0.412 6.412 9 N -0.337 5.337 10 C 0.045 3.955 11 C -0.150 4.150 12 C -0.155 4.155 13 C -0.150 4.150 14 C 0.050 3.950 15 H 0.039 0.961 16 N -0.306 5.306 17 C -0.470 4.470 18 H 0.085 0.915 19 C -0.224 4.224 20 N -0.547 5.547 21 Si 0.889 3.111 22 H -0.212 1.212 23 H -0.222 1.222 24 H -0.220 1.220 25 C 0.019 3.981 26 C -0.164 4.164 27 C 0.325 3.675 28 O -0.436 6.436 29 C -0.273 4.273 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.162 0.838 34 H 0.179 0.821 35 H 0.145 0.855 36 H 0.139 0.861 37 H 0.241 0.759 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.081 0.919 45 H 0.054 0.946 46 H 0.061 0.939 47 H 0.090 0.910 48 H 0.088 0.912 49 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -16.187 -5.087 5.414 17.810 hybrid contribution -0.153 -1.154 -0.560 1.292 sum -16.340 -6.241 4.854 18.152 Atomic orbital electron populations 1.20916 0.90479 1.03505 1.02945 1.20186 0.96665 0.92701 0.89280 1.20494 0.92328 0.98864 1.14047 1.21935 0.93618 0.89631 0.92550 1.45029 1.07348 1.07214 1.59170 1.21850 0.79399 1.07307 0.97268 1.20459 0.83213 0.77134 0.90611 1.90705 1.55280 1.49754 1.45482 1.45651 1.05748 1.73225 1.09125 1.21537 0.98696 0.93906 0.81322 1.21857 0.98700 0.94451 1.00003 1.22604 0.95515 0.97692 0.99682 1.21576 0.98789 0.94858 0.99801 1.20805 0.89722 0.88355 0.96129 0.96117 1.43666 1.25424 1.03159 1.58352 1.19647 1.09136 0.94962 1.23268 0.91505 1.25671 0.99911 0.93038 1.03755 1.70796 1.42835 1.38171 1.02936 0.83609 0.75735 0.76186 0.75614 1.21164 1.22186 1.21998 1.22127 0.86987 0.92319 0.96668 1.22532 0.99568 0.94978 0.99313 1.17062 0.89303 0.82460 0.78691 1.90947 1.69176 1.30301 1.53201 1.21883 0.92301 0.99447 1.13622 0.90204 0.90791 0.90906 0.83798 0.82128 0.85484 0.86065 0.75906 0.91121 0.91148 0.92038 0.91853 0.91658 0.91751 0.91886 0.94613 0.93872 0.91000 0.91207 0.83732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.77 10.03 36.01 0.36 -0.41 16 2 C 0.02 0.15 5.89 -104.55 -0.62 -0.47 16 3 C -0.23 -2.09 9.71 -39.87 -0.39 -2.48 16 4 C 0.15 1.51 10.28 -16.84 -0.17 1.34 16 5 N -0.48 -6.19 2.07 -121.06 -0.25 -6.44 16 6 C 0.07 0.84 5.82 -5.19 -0.03 0.81 16 7 C 0.50 7.98 7.21 -10.99 -0.08 7.90 16 8 O -0.54 -10.14 14.58 5.56 0.08 -10.06 16 9 N -0.69 -11.13 4.35 -46.58 -0.20 -11.33 16 10 C 0.13 2.33 0.41 -130.71 -0.05 2.28 16 11 C -0.11 -1.81 6.05 -26.19 -0.16 -1.97 16 12 C -0.12 -1.72 6.90 -24.22 -0.17 -1.89 16 13 C -0.11 -1.88 6.37 -26.90 -0.17 -2.05 16 14 C 0.16 3.14 2.65 -68.71 -0.18 2.95 16 15 H 0.02 0.45 7.99 -51.93 -0.41 0.04 16 16 N -0.58 -13.48 2.98 -162.73 -0.49 -13.96 16 17 C -0.34 -8.92 10.01 -15.06 -0.15 -9.07 16 18 H 0.07 1.74 7.99 -52.48 -0.42 1.32 16 19 C -0.02 -0.56 5.15 -17.44 -0.09 -0.65 16 20 N -0.91 -26.25 13.02 55.49 0.72 -25.53 16 21 Si 1.06 23.98 30.01 -169.99 -5.10 18.88 16 22 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 25 C 0.14 3.16 5.83 -0.81 0.00 3.15 16 26 C -0.13 -2.33 6.22 -25.49 -0.16 -2.48 16 27 C 0.52 8.02 7.40 -15.45 -0.11 7.91 16 28 O -0.55 -10.45 16.64 4.86 0.08 -10.37 16 29 C -0.25 -3.12 9.65 -39.38 -0.38 -3.50 16 30 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.38 8.10 -51.93 -0.42 -0.04 16 32 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 33 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 34 H 0.16 1.17 8.03 -52.49 -0.42 0.75 16 35 H 0.13 1.56 7.39 -51.93 -0.38 1.18 16 36 H 0.12 1.10 8.01 -51.93 -0.42 0.68 16 37 H 0.40 6.42 7.76 -40.82 -0.32 6.11 16 38 H 0.07 1.25 6.84 -51.93 -0.36 0.90 16 39 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.06 1.07 7.31 -51.93 -0.38 0.69 16 44 H 0.27 7.86 6.09 -40.82 -0.25 7.61 16 45 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.04 1.05 6.15 -51.93 -0.32 0.73 16 47 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 48 H 0.07 1.30 7.17 -51.93 -0.37 0.93 16 49 H 0.14 1.63 8.06 -52.48 -0.42 1.21 16 LS Contribution 390.59 15.07 5.89 5.89 Total: -1.00 -34.48 390.59 -9.31 -43.80 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -7.49 Total: 7.78 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: -2.56 Total: 1.37 kcal Atomic # 7 Polarization: -57.05 SS G_CDS: -0.22 Total: -57.27 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: 0.16 Total: -20.43 kcal Atomic # 14 Polarization: 23.98 SS G_CDS: -5.10 Total: 18.88 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.48 -9.31 -43.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992270003.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.247 kcal (2) G-P(sol) polarization free energy of solvation -34.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds