Wall clock time and date at job start Wed Apr 1 2020 05:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.40200 * 120.36381 * 2 1 4 4 C 1.35353 * 119.94353 * 179.76908 * 3 2 1 5 5 N 1.35757 * 120.70362 * 0.53081 * 4 3 2 6 6 C 1.46505 * 119.62556 * 179.71423 * 5 4 3 7 7 C 1.50695 * 109.47069 * 269.73192 * 6 5 4 8 8 O 1.21276 * 120.00420 * 0.02562 * 7 6 5 9 9 N 1.34782 * 119.99677 * 179.97438 * 7 6 5 10 10 C 1.46498 * 119.99888 * 180.02562 * 9 7 6 11 11 C 1.51223 * 111.06848 * 291.65982 * 10 9 7 12 12 C 1.55692 * 104.61320 * 276.12892 * 11 10 9 13 13 C 1.55029 * 105.77039 * 352.87300 * 12 11 10 14 14 C 1.50521 * 102.34536 * 335.48451 * 13 12 11 15 15 H 1.08999 * 108.14173 * 293.46568 * 14 13 12 16 16 N 1.42711 * 128.15269 * 161.02938 * 14 13 12 17 17 C 1.36936 * 127.10136 * 28.95398 * 16 14 13 18 18 H 1.08003 * 119.99941 * 342.47205 * 17 16 14 19 19 C 1.38808 * 119.99669 * 162.46238 * 17 16 14 20 20 N 1.31609 * 120.00339 * 329.62550 * 19 17 16 21 21 Si 1.86803 * 119.99574 * 149.89885 * 19 17 16 22 22 H 1.48495 * 109.47051 * 179.72587 * 21 19 17 23 23 H 1.48505 * 109.47166 * 299.72612 * 21 19 17 24 24 H 1.48498 * 109.47219 * 59.72631 * 21 19 17 25 25 C 1.49293 * 105.79542 * 209.21894 * 16 14 13 26 26 C 1.52124 * 111.08882 * 71.70036 * 10 9 7 27 27 C 1.34662 * 120.74981 * 359.44988 * 5 4 3 28 28 O 1.22060 * 119.98482 * 180.26982 * 27 5 4 29 29 C 1.36396 * 120.36910 * 180.02562 * 2 1 3 30 30 H 1.08997 * 109.47194 * 269.97032 * 1 2 3 31 31 H 1.09000 * 109.47412 * 29.98032 * 1 2 3 32 32 H 1.09003 * 109.46751 * 149.97553 * 1 2 3 33 33 H 1.07998 * 120.02794 * 0.03063 * 3 2 1 34 34 H 1.08000 * 119.64715 * 180.24951 * 4 3 2 35 35 H 1.08997 * 109.46707 * 149.72946 * 6 5 4 36 36 H 1.08998 * 109.46580 * 29.73361 * 6 5 4 37 37 H 0.97001 * 120.00061 * 0.02562 * 9 7 6 38 38 H 1.09002 * 110.40555 * 34.91063 * 11 10 9 39 39 H 1.08999 * 110.41235 * 157.22784 * 11 10 9 40 40 H 1.09003 * 110.15842 * 111.86262 * 12 11 10 41 41 H 1.08991 * 110.16041 * 233.56077 * 12 11 10 42 42 H 1.09004 * 110.93434 * 217.05937 * 13 12 11 43 43 H 1.09005 * 110.45545 * 93.68887 * 13 12 11 44 44 H 0.97004 * 120.00334 * 354.15693 * 20 19 17 45 45 H 1.09000 * 110.04894 * 127.65739 * 25 16 14 46 46 H 1.08996 * 110.04845 * 249.14054 * 25 16 14 47 47 H 1.09000 * 111.15143 * 191.84970 * 26 10 9 48 48 H 1.09001 * 111.15308 * 316.07558 * 26 10 9 49 49 H 1.08006 * 120.34784 * 359.95085 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2157 1.2097 0.0000 4 6 3.5692 1.1998 0.0047 5 7 4.2538 0.0275 -0.0013 6 6 5.7188 0.0443 -0.0024 7 6 6.2200 0.0502 -1.4235 8 8 5.4314 0.0416 -2.3448 9 7 7.5449 0.0659 -1.6706 10 6 8.0323 0.0722 -3.0522 11 6 7.7375 -1.2427 -3.7385 12 6 8.9108 -2.1763 -3.3194 13 6 9.9143 -1.2747 -2.5554 14 6 9.6061 0.0907 -3.1088 15 1 9.8876 0.1017 -4.1617 16 7 9.9295 1.3627 -2.5483 17 6 10.9956 1.6637 -1.7433 18 1 11.5331 0.8730 -1.2409 19 6 11.3854 2.9850 -1.5731 20 7 11.2002 3.8558 -2.5423 21 14 12.1799 3.5253 0.0289 22 1 12.5067 4.9720 -0.0440 23 1 11.2395 3.2863 1.1531 24 1 13.4250 2.7472 0.2511 25 6 8.8620 2.2959 -3.0156 26 6 7.7781 1.4171 -3.7162 27 6 3.6017 -1.1507 -0.0010 28 8 4.2313 -2.1964 -0.0015 29 6 2.1966 -1.1768 -0.0005 30 1 -0.3633 -0.0005 1.0276 31 1 -0.3634 0.8901 -0.5135 32 1 -0.3633 -0.8898 -0.5142 33 1 1.6821 2.1487 0.0005 34 1 4.1103 2.1344 0.0088 35 1 6.0926 -0.8414 0.5112 36 1 6.0721 0.9384 0.5113 37 1 8.1757 0.0732 -0.9338 38 1 6.7869 -1.6478 -3.3916 39 1 7.7217 -1.1116 -4.8205 40 1 8.5455 -2.9685 -2.6660 41 1 9.3827 -2.6062 -4.2028 42 1 10.9423 -1.5622 -2.7761 43 1 9.7216 -1.3138 -1.4832 44 1 10.8703 3.5588 -3.4048 45 1 8.4269 2.8216 -2.1656 46 1 9.2760 3.0114 -3.7260 47 1 7.9451 1.3624 -4.7919 48 1 6.7755 1.7823 -3.4939 49 1 1.6683 -2.1188 -0.0001 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992270003.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:12 Heat of formation + Delta-G solvation = -16.658990 kcal Electronic energy + Delta-G solvation = -31664.728213 eV Core-core repulsion = 27592.470523 eV Total energy + Delta-G solvation = -4072.257689 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.61918 -41.94511 -39.62156 -38.10339 -36.53229 -36.18468 -34.65886 -33.74127 -31.90991 -31.19712 -30.37777 -28.49674 -28.16605 -27.17293 -25.84839 -24.66626 -23.12644 -22.35280 -21.96934 -21.39748 -20.33259 -19.06396 -18.77690 -18.53845 -18.33275 -17.32294 -17.02396 -16.50475 -16.40638 -16.33777 -15.94868 -15.51605 -15.49828 -15.17527 -15.10398 -14.87112 -14.63639 -14.22644 -14.14968 -13.70630 -13.59984 -13.46349 -13.36732 -13.12243 -12.95637 -12.85624 -12.57075 -12.50590 -12.46978 -12.29295 -12.21613 -11.98324 -11.85024 -11.62900 -11.44189 -11.32728 -11.11791 -11.03098 -10.56347 -10.39702 -10.08560 -9.00853 -8.98087 -8.28140 -5.31313 -0.12891 0.90623 1.44161 1.51026 1.61743 1.67366 1.86277 2.16941 2.64699 2.69475 2.92607 3.17327 3.54993 3.61357 3.68863 3.72410 3.74629 3.86200 3.92529 4.04664 4.10787 4.14529 4.20619 4.26281 4.32277 4.36743 4.38011 4.46716 4.66490 4.77618 4.80500 4.82283 4.83793 4.88042 4.89525 4.97242 5.00051 5.08697 5.09779 5.11208 5.23273 5.29515 5.39886 5.47607 5.60720 5.64952 5.76377 6.05484 6.29918 6.48741 6.90027 6.95907 7.14272 7.70315 8.37354 9.01761 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013355 B = 0.003263 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.137811 B = 8580.098554 C = 9543.076797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.033 3.967 3 C -0.227 4.227 4 C 0.135 3.865 5 N -0.480 5.480 6 C 0.071 3.929 7 C 0.503 3.497 8 O -0.567 6.567 9 N -0.686 5.686 10 C 0.144 3.856 11 C -0.107 4.107 12 C -0.105 4.105 13 C -0.107 4.107 14 C 0.148 3.852 15 H 0.008 0.992 16 N -0.594 5.594 17 C -0.338 4.338 18 H 0.067 0.933 19 C -0.075 4.075 20 N -0.941 5.941 21 Si 1.110 2.890 22 H -0.299 1.299 23 H -0.275 1.275 24 H -0.279 1.279 25 C 0.153 3.847 26 C -0.113 4.113 27 C 0.503 3.497 28 O -0.610 6.610 29 C -0.288 4.288 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.074 0.926 33 H 0.181 0.819 34 H 0.192 0.808 35 H 0.126 0.874 36 H 0.160 0.840 37 H 0.408 0.592 38 H 0.057 0.943 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.082 0.918 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.254 0.746 45 H 0.020 0.980 46 H 0.015 0.985 47 H 0.079 0.921 48 H 0.071 0.929 49 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.303 -5.531 6.514 20.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.029 3.971 3 C -0.250 4.250 4 C 0.009 3.991 5 N -0.189 5.189 6 C -0.054 4.054 7 C 0.288 3.712 8 O -0.446 6.446 9 N -0.337 5.337 10 C 0.056 3.944 11 C -0.146 4.146 12 C -0.143 4.143 13 C -0.145 4.145 14 C 0.039 3.961 15 H 0.025 0.975 16 N -0.318 5.318 17 C -0.466 4.466 18 H 0.085 0.915 19 C -0.271 4.271 20 N -0.584 5.584 21 Si 0.935 3.065 22 H -0.226 1.226 23 H -0.201 1.201 24 H -0.205 1.205 25 C 0.028 3.972 26 C -0.152 4.152 27 C 0.309 3.691 28 O -0.498 6.498 29 C -0.310 4.310 30 H 0.117 0.883 31 H 0.112 0.888 32 H 0.093 0.907 33 H 0.199 0.801 34 H 0.209 0.791 35 H 0.144 0.856 36 H 0.177 0.823 37 H 0.244 0.756 38 H 0.076 0.924 39 H 0.097 0.903 40 H 0.091 0.909 41 H 0.100 0.900 42 H 0.084 0.916 43 H 0.086 0.914 44 H 0.065 0.935 45 H 0.038 0.962 46 H 0.032 0.968 47 H 0.098 0.902 48 H 0.090 0.910 49 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -17.723 -4.866 6.756 19.582 hybrid contribution 0.236 -1.166 -1.032 1.575 sum -17.487 -6.032 5.724 19.364 Atomic orbital electron populations 1.21033 0.87752 1.04597 1.04399 1.20636 0.98608 0.91926 0.85936 1.21038 0.92121 0.99999 1.11801 1.22608 0.94561 0.89600 0.92288 1.45047 1.07525 1.07590 1.58731 1.21921 0.79488 1.09087 0.94913 1.20995 0.82533 0.75849 0.91800 1.90684 1.55899 1.51149 1.46899 1.45634 1.06200 1.73308 1.08556 1.21406 0.96777 0.93958 0.82272 1.21830 0.98656 0.93705 1.00381 1.22539 0.94212 0.97106 1.00408 1.21568 0.99511 0.93245 1.00182 1.20966 0.91488 0.88344 0.95296 0.97517 1.43776 1.25060 1.04727 1.58222 1.19888 1.09289 0.94895 1.22541 0.91499 1.26975 1.00778 0.93637 1.05753 1.70919 1.45709 1.38722 1.03015 0.82920 0.75884 0.75031 0.72658 1.22563 1.20054 1.20469 1.21950 0.87456 0.92264 0.95504 1.22415 0.98191 0.95034 0.99538 1.17536 0.90353 0.82494 0.78714 1.90891 1.70233 1.32094 1.56562 1.21903 0.91343 1.00850 1.16855 0.88314 0.88836 0.90710 0.80133 0.79133 0.85561 0.82283 0.75593 0.92437 0.90307 0.90857 0.89967 0.91571 0.91449 0.93541 0.96167 0.96750 0.90239 0.91050 0.83857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.14 10.03 71.24 0.71 -0.43 16 2 C 0.03 0.57 5.89 -19.82 -0.12 0.45 16 3 C -0.23 -3.31 9.71 22.08 0.21 -3.09 16 4 C 0.14 2.38 10.28 83.42 0.86 3.24 16 5 N -0.48 -11.98 2.07 -655.07 -1.36 -13.34 16 6 C 0.07 1.69 5.82 85.63 0.50 2.18 16 7 C 0.50 15.62 7.21 87.65 0.63 16.25 16 8 O -0.57 -21.29 14.58 -3.02 -0.04 -21.33 16 9 N -0.69 -21.75 4.35 -419.68 -1.82 -23.58 16 10 C 0.14 4.97 0.41 4.32 0.00 4.97 16 11 C -0.11 -3.35 6.05 30.94 0.19 -3.17 16 12 C -0.10 -2.88 6.90 32.22 0.22 -2.66 16 13 C -0.11 -3.44 6.37 30.49 0.19 -3.25 16 14 C 0.15 5.76 2.65 46.47 0.12 5.88 16 15 H 0.01 0.31 7.99 -2.39 -0.02 0.29 16 16 N -0.59 -27.74 2.98 -668.75 -1.99 -29.74 16 17 C -0.34 -17.59 10.01 84.03 0.84 -16.75 16 18 H 0.07 3.43 7.99 -2.91 -0.02 3.41 16 19 C -0.07 -4.05 5.15 84.86 0.44 -3.61 16 20 N -0.94 -55.79 13.02 21.65 0.28 -55.51 16 21 Si 1.11 48.18 30.01 68.60 2.06 50.24 16 22 H -0.30 -13.55 7.11 99.48 0.71 -12.85 16 23 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 24 H -0.28 -11.35 7.11 99.48 0.71 -10.65 16 25 C 0.15 6.90 5.83 86.93 0.51 7.40 16 26 C -0.11 -4.20 6.22 31.40 0.20 -4.01 16 27 C 0.50 15.72 7.40 84.82 0.63 16.35 16 28 O -0.61 -24.08 16.64 -5.51 -0.09 -24.18 16 29 C -0.29 -7.16 9.65 22.40 0.22 -6.95 16 30 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.09 0.57 8.10 -2.39 -0.02 0.55 16 32 H 0.07 0.72 8.09 -2.39 -0.02 0.70 16 33 H 0.18 1.29 8.06 -2.91 -0.02 1.27 16 34 H 0.19 2.08 8.03 -2.91 -0.02 2.06 16 35 H 0.13 3.07 7.39 -2.39 -0.02 3.05 16 36 H 0.16 2.47 8.01 -2.39 -0.02 2.45 16 37 H 0.41 12.55 7.76 -92.71 -0.72 11.83 16 38 H 0.06 1.99 6.84 -2.39 -0.02 1.98 16 39 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 40 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 43 H 0.07 2.13 7.31 -2.38 -0.02 2.12 16 44 H 0.25 15.42 6.09 -92.71 -0.56 14.86 16 45 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.01 0.74 6.15 -2.39 -0.01 0.73 16 47 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 48 H 0.07 2.64 7.17 -2.39 -0.02 2.63 16 49 H 0.14 3.39 8.06 -2.91 -0.02 3.36 16 Total: -1.00 -78.29 390.59 3.83 -74.46 By element: Atomic # 1 Polarization: 29.71 SS G_CDS: 0.45 Total: 30.16 kcal Atomic # 6 Polarization: 6.45 SS G_CDS: 6.35 Total: 12.80 kcal Atomic # 7 Polarization: -117.26 SS G_CDS: -4.90 Total: -122.16 kcal Atomic # 8 Polarization: -45.37 SS G_CDS: -0.14 Total: -45.51 kcal Atomic # 14 Polarization: 48.18 SS G_CDS: 2.06 Total: 50.24 kcal Total: -78.29 3.83 -74.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992270003.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.802 kcal (2) G-P(sol) polarization free energy of solvation -78.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds