Wall clock time and date at job start Wed Apr 1 2020 04:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37994 * 120.82151 * 2 1 4 4 C 1.39124 * 119.26228 * 180.27474 * 3 2 1 5 5 O 1.35500 * 119.52717 * 179.69691 * 4 3 2 6 6 N 1.32443 * 120.95154 * 359.72132 * 4 3 2 7 7 C 1.31635 * 121.79582 * 359.97438 * 6 4 3 8 8 C 1.39562 * 120.62902 * 0.02562 * 7 6 4 9 9 C 1.47611 * 120.49995 * 179.97438 * 8 7 6 10 10 O 1.21588 * 120.00264 * 135.18435 * 9 8 7 11 11 N 1.34779 * 120.00048 * 315.18466 * 9 8 7 12 12 C 1.47170 * 125.65072 * 354.80249 * 11 9 8 13 13 C 1.55342 * 106.96613 * 180.99783 * 12 11 9 14 14 H 1.09000 * 112.90830 * 214.96447 * 13 12 11 15 15 C 1.53009 * 106.41670 * 91.60524 * 13 12 11 16 16 C 1.52595 * 111.05239 * 197.20800 * 15 13 12 17 17 C 1.51917 * 108.63704 * 62.02195 * 16 15 13 18 18 C 1.52825 * 108.83070 * 296.45733 * 17 16 15 19 19 H 1.09004 * 108.96376 * 297.63405 * 18 17 16 20 20 N 1.46500 * 109.02368 * 178.76367 * 18 17 16 21 21 C 1.36939 * 119.99920 * 82.76121 * 20 18 17 22 22 H 1.07998 * 119.99936 * 359.97438 * 21 20 18 23 23 C 1.38816 * 120.00175 * 180.02562 * 21 20 18 24 24 N 1.31624 * 119.99443 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00340 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.47218 * 270.00101 * 25 23 21 27 27 H 1.48501 * 109.47036 * 29.99558 * 25 23 21 28 28 H 1.48500 * 109.47121 * 149.99199 * 25 23 21 29 29 C 1.50724 * 111.74690 * 58.18201 * 18 17 16 30 30 H 1.09008 * 109.27008 * 186.93959 * 29 18 17 31 31 C 1.47291 * 125.95217 * 175.54555 * 11 9 8 32 32 H 1.08998 * 109.46845 * 264.87215 * 1 2 3 33 33 H 1.08999 * 109.47023 * 24.86997 * 1 2 3 34 34 H 1.08998 * 109.47259 * 144.87304 * 1 2 3 35 35 H 1.07999 * 120.36633 * 359.97438 * 3 2 1 36 36 H 0.96692 * 114.00666 * 270.02386 * 5 4 3 37 37 H 1.07999 * 119.68393 * 180.02562 * 7 6 4 38 38 H 1.09002 * 109.96297 * 61.61890 * 12 11 9 39 39 H 1.09007 * 109.96161 * 300.37749 * 12 11 9 40 40 H 1.09002 * 109.15954 * 317.61316 * 15 13 12 41 41 H 1.09002 * 109.16014 * 76.85560 * 15 13 12 42 42 H 1.08996 * 109.67620 * 182.08068 * 16 15 13 43 43 H 1.08997 * 109.67573 * 302.62433 * 16 15 13 44 44 H 1.08991 * 109.97505 * 176.21533 * 17 16 15 45 45 H 1.09001 * 108.76082 * 55.97269 * 17 16 15 46 46 H 0.96995 * 120.00669 * 262.75986 * 20 18 17 47 47 H 0.97000 * 119.99119 * 180.02562 * 24 23 21 48 48 H 1.09002 * 110.84907 * 84.75028 * 31 11 9 49 49 H 1.08995 * 109.92636 * 322.20253 * 31 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1850 0.0000 4 6 3.6048 1.1472 -0.0058 5 8 4.3044 2.3076 -0.0121 6 7 4.2548 -0.0067 -0.0058 7 6 3.6204 -1.1601 0.0002 8 6 2.2255 -1.2044 0.0062 9 6 1.5171 -2.4994 0.0123 10 8 0.5731 -2.6725 0.7589 11 7 1.9165 -3.4900 -0.8097 12 6 2.9672 -3.3828 -1.8346 13 6 3.0542 -4.7638 -2.5406 14 1 4.0704 -5.0270 -2.8342 15 6 2.1081 -4.6960 -3.7412 16 6 1.7812 -6.0929 -4.2611 17 6 1.0699 -6.8654 -3.1632 18 6 2.0238 -7.0337 -1.9811 19 1 2.8859 -7.6184 -2.3020 20 7 1.3323 -7.7524 -0.9080 21 6 1.2580 -9.1195 -0.9368 22 1 1.7089 -9.6677 -1.7508 23 6 0.6023 -9.8006 0.0796 24 7 0.0524 -9.1323 1.0713 25 14 0.5004 -11.6654 0.0400 26 1 -0.7252 -12.0787 -0.6896 27 1 1.6958 -12.2119 -0.6511 28 1 0.4497 -12.1880 1.4291 29 6 2.5002 -5.7043 -1.4543 30 1 3.2680 -5.8710 -0.6987 31 6 1.3682 -4.8565 -0.8473 32 1 -0.3633 -0.0919 1.0235 33 1 -0.3633 0.9324 -0.4322 34 1 -0.3634 -0.8405 -0.5913 35 1 1.6935 2.1313 -0.0004 36 1 4.5034 2.6422 -0.8972 37 1 4.1848 -2.0809 0.0004 38 1 3.9217 -3.1439 -1.3655 39 1 2.7042 -2.6109 -2.5579 40 1 1.1846 -4.2006 -3.4414 41 1 2.5807 -4.1204 -4.5371 42 1 1.1369 -6.0171 -5.1369 43 1 2.7029 -6.6107 -4.5265 44 1 0.7664 -7.8445 -3.5335 45 1 0.1916 -6.3010 -2.8500 46 1 0.9270 -7.2601 -0.1772 47 1 -0.4055 -9.6083 1.7817 48 1 0.4789 -4.9005 -1.4761 49 1 1.1392 -5.1928 0.1639 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992803743.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:27 Heat of formation + Delta-G solvation = -27.430219 kcal Electronic energy + Delta-G solvation = -31033.896413 eV Core-core repulsion = 26961.171648 eV Total energy + Delta-G solvation = -4072.724765 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 2.81 seconds Orbital eigenvalues (eV) -41.27185 -40.33037 -38.69551 -37.27781 -35.63086 -34.18890 -33.88398 -31.70542 -31.39700 -30.25235 -28.90248 -28.24094 -26.67102 -25.28940 -23.97041 -23.35779 -22.58191 -21.69943 -20.84573 -19.91647 -18.77398 -18.46247 -17.86463 -17.32258 -16.76934 -16.27353 -16.12225 -15.63950 -15.15116 -14.73077 -14.52565 -14.15916 -14.12348 -13.83356 -13.75669 -13.47667 -13.34030 -13.16359 -12.91439 -12.71915 -12.67664 -12.64481 -12.37091 -12.07228 -11.94495 -11.70927 -11.35318 -11.10256 -11.02847 -10.85411 -10.75569 -10.26084 -10.23665 -10.18716 -9.97764 -9.91003 -9.73738 -9.63279 -9.54479 -9.30272 -8.87840 -8.55882 -6.96613 -5.75880 -3.05463 0.32984 0.79846 2.53589 2.85417 3.19330 3.37802 3.43577 3.48600 3.50640 4.16737 4.22100 4.34028 4.45002 4.54983 4.62268 4.77656 4.79878 4.88588 5.03082 5.21167 5.25082 5.32379 5.35466 5.38004 5.40329 5.43225 5.56237 5.62849 5.67698 5.71512 5.73984 5.82393 5.86985 5.92620 5.99719 6.02569 6.06844 6.22196 6.22972 6.31492 6.37019 6.47648 6.58775 6.71344 6.88925 7.04364 7.09200 7.45324 7.49498 7.70221 8.07859 8.41997 9.53239 10.09623 10.43790 11.46422 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016812 B = 0.002675 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.099754 B =10463.481953 C =11186.537188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.024 3.976 3 C -0.194 4.194 4 C 0.328 3.672 5 O -0.481 6.481 6 N -0.508 5.508 7 C 0.162 3.838 8 C -0.188 4.188 9 C 0.577 3.423 10 O -0.522 6.522 11 N -0.609 5.609 12 C 0.096 3.904 13 C -0.089 4.089 14 H 0.098 0.902 15 C -0.111 4.111 16 C -0.117 4.117 17 C -0.136 4.136 18 C 0.192 3.808 19 H 0.050 0.950 20 N -0.726 5.726 21 C -0.240 4.240 22 H 0.070 0.930 23 C -0.012 4.012 24 N -0.931 5.931 25 Si 0.905 3.095 26 H -0.290 1.290 27 H -0.282 1.282 28 H -0.292 1.292 29 C -0.094 4.094 30 H 0.079 0.921 31 C 0.116 3.884 32 H 0.091 0.909 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.147 0.853 36 H 0.403 0.597 37 H 0.169 0.831 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.061 0.939 41 H 0.057 0.943 42 H 0.055 0.945 43 H 0.059 0.941 44 H 0.064 0.936 45 H 0.055 0.945 46 H 0.384 0.616 47 H 0.255 0.745 48 H 0.075 0.925 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.664 21.744 -9.835 24.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.016 3.984 3 C -0.215 4.215 4 C 0.150 3.850 5 O -0.288 6.288 6 N -0.227 5.227 7 C 0.004 3.996 8 C -0.193 4.193 9 C 0.364 3.636 10 O -0.399 6.399 11 N -0.343 5.343 12 C -0.027 4.027 13 C -0.109 4.109 14 H 0.116 0.884 15 C -0.149 4.149 16 C -0.156 4.156 17 C -0.177 4.177 18 C 0.082 3.918 19 H 0.068 0.932 20 N -0.367 5.367 21 C -0.371 4.371 22 H 0.088 0.912 23 C -0.209 4.209 24 N -0.579 5.579 25 Si 0.736 3.264 26 H -0.218 1.218 27 H -0.208 1.208 28 H -0.218 1.218 29 C -0.114 4.114 30 H 0.097 0.903 31 C -0.005 4.005 32 H 0.109 0.891 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.165 0.835 36 H 0.261 0.739 37 H 0.186 0.814 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.079 0.921 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.078 0.922 44 H 0.083 0.917 45 H 0.073 0.927 46 H 0.218 0.782 47 H 0.065 0.935 48 H 0.093 0.907 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 7.016 21.558 -8.770 24.308 hybrid contribution -0.936 -0.744 -0.180 1.209 sum 6.080 20.814 -8.951 23.458 Atomic orbital electron populations 1.20912 0.88906 1.03228 1.04408 1.20278 0.97393 0.90690 0.90077 1.21934 0.93726 0.99407 1.06397 1.19343 0.87064 0.85231 0.93359 1.84732 1.75990 1.34131 1.33996 1.67203 1.41883 0.98189 1.15390 1.22850 0.90180 0.95289 0.91317 1.20909 0.95337 0.94381 1.08690 1.17501 0.83362 0.82463 0.80243 1.90851 1.27597 1.81273 1.40150 1.48434 1.37996 1.12374 1.35466 1.22577 0.90944 0.98809 0.90346 1.22260 1.00339 0.92958 0.95297 0.88376 1.21560 0.99028 0.97907 0.96368 1.21280 1.00538 0.95374 0.98359 1.22059 0.99484 0.99862 0.96263 1.19536 0.94029 0.89238 0.88977 0.93235 1.42513 1.65541 1.03828 1.24854 1.19206 1.29357 0.82808 1.05712 0.91174 1.24746 1.01006 0.97758 0.97347 1.69664 1.41375 1.34233 1.12588 0.86224 0.77663 0.85785 0.76701 1.21781 1.20806 1.21837 1.21775 0.97473 0.95139 0.97039 0.90273 1.22152 0.96893 0.78674 1.02773 0.89062 0.90929 0.90320 0.83545 0.73883 0.81443 0.91443 0.91357 0.92054 0.92456 0.92672 0.92221 0.91707 0.92668 0.78164 0.93473 0.90710 0.89660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.13 8.90 36.01 0.32 -0.81 16 2 C 0.02 0.25 5.94 -103.96 -0.62 -0.37 16 3 C -0.19 -1.73 9.71 -39.34 -0.38 -2.11 16 4 C 0.33 3.29 7.74 -16.96 -0.13 3.16 16 5 O -0.48 -3.90 13.55 -18.19 -0.25 -4.15 16 6 N -0.51 -5.86 10.37 -12.96 -0.13 -5.99 16 7 C 0.16 1.80 9.61 -17.14 -0.16 1.63 16 8 C -0.19 -2.27 5.39 -104.82 -0.57 -2.84 16 9 C 0.58 8.51 6.69 -12.43 -0.08 8.43 16 10 O -0.52 -9.61 15.95 5.29 0.08 -9.53 16 11 N -0.61 -8.27 3.33 -171.68 -0.57 -8.84 16 12 C 0.10 0.99 5.21 -2.43 -0.01 0.98 16 13 C -0.09 -0.98 3.61 -88.85 -0.32 -1.30 16 14 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 15 C -0.11 -1.20 4.61 -26.93 -0.12 -1.32 16 16 C -0.12 -1.45 5.88 -27.49 -0.16 -1.61 16 17 C -0.14 -2.23 5.24 -27.37 -0.14 -2.38 16 18 C 0.19 3.48 2.48 -69.16 -0.17 3.30 16 19 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 20 N -0.73 -17.28 5.03 -54.63 -0.27 -17.56 16 21 C -0.24 -6.43 9.89 -15.06 -0.15 -6.58 16 22 H 0.07 1.83 7.83 -52.49 -0.41 1.41 16 23 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 24 N -0.93 -27.97 13.06 55.49 0.72 -27.25 16 25 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 26 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 27 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 28 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 29 C -0.09 -1.41 2.54 -90.77 -0.23 -1.64 16 30 H 0.08 1.25 8.14 -51.92 -0.42 0.83 16 31 C 0.12 1.87 5.01 -3.14 -0.02 1.85 16 32 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.07 0.49 8.07 -51.93 -0.42 0.07 16 34 H 0.08 0.87 7.10 -51.93 -0.37 0.50 16 35 H 0.15 0.93 8.06 -52.49 -0.42 0.51 16 36 H 0.40 1.10 9.06 45.56 0.41 1.52 16 37 H 0.17 1.62 6.16 -52.49 -0.32 1.30 16 38 H 0.07 0.59 5.76 -51.93 -0.30 0.29 16 39 H 0.07 0.63 7.74 -51.93 -0.40 0.22 16 40 H 0.06 0.72 7.08 -51.93 -0.37 0.36 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 45 H 0.05 0.95 6.79 -51.93 -0.35 0.60 16 46 H 0.38 9.85 6.44 -40.82 -0.26 9.59 16 47 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 48 H 0.07 1.25 6.07 -51.93 -0.32 0.94 16 49 H 0.09 1.64 7.44 -51.93 -0.39 1.25 16 LS Contribution 383.09 15.07 5.77 5.77 Total: -1.00 -33.78 383.09 -9.15 -42.93 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -6.43 Total: 9.49 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -3.05 Total: -2.05 kcal Atomic # 7 Polarization: -59.38 SS G_CDS: -0.26 Total: -59.64 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: -0.16 Total: -13.67 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.78 -9.15 -42.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992803743.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.497 kcal (2) G-P(sol) polarization free energy of solvation -33.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.81 seconds