Wall clock time and date at job start Wed Apr 1 2020 04:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37994 * 120.82151 * 2 1 4 4 C 1.39124 * 119.26228 * 180.27474 * 3 2 1 5 5 O 1.35500 * 119.52717 * 179.69691 * 4 3 2 6 6 N 1.32443 * 120.95154 * 359.72132 * 4 3 2 7 7 C 1.31635 * 121.79582 * 359.97438 * 6 4 3 8 8 C 1.39562 * 120.62902 * 0.02562 * 7 6 4 9 9 C 1.47611 * 120.49995 * 179.97438 * 8 7 6 10 10 O 1.21588 * 120.00264 * 135.18435 * 9 8 7 11 11 N 1.34779 * 120.00048 * 315.18466 * 9 8 7 12 12 C 1.47170 * 125.65072 * 354.80249 * 11 9 8 13 13 C 1.55342 * 106.96613 * 180.99783 * 12 11 9 14 14 H 1.09000 * 112.90830 * 214.96447 * 13 12 11 15 15 C 1.53009 * 106.41670 * 91.60524 * 13 12 11 16 16 C 1.52595 * 111.05239 * 197.20800 * 15 13 12 17 17 C 1.51917 * 108.63704 * 62.02195 * 16 15 13 18 18 C 1.52825 * 108.83070 * 296.45733 * 17 16 15 19 19 H 1.09004 * 108.96376 * 297.63405 * 18 17 16 20 20 N 1.46500 * 109.02368 * 178.76367 * 18 17 16 21 21 C 1.36939 * 119.99920 * 82.76121 * 20 18 17 22 22 H 1.07998 * 119.99936 * 359.97438 * 21 20 18 23 23 C 1.38816 * 120.00175 * 180.02562 * 21 20 18 24 24 N 1.31624 * 119.99443 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00340 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.47218 * 270.00101 * 25 23 21 27 27 H 1.48501 * 109.47036 * 29.99558 * 25 23 21 28 28 H 1.48500 * 109.47121 * 149.99199 * 25 23 21 29 29 C 1.50724 * 111.74690 * 58.18201 * 18 17 16 30 30 H 1.09008 * 109.27008 * 186.93959 * 29 18 17 31 31 C 1.47291 * 125.95217 * 175.54555 * 11 9 8 32 32 H 1.08998 * 109.46845 * 264.87215 * 1 2 3 33 33 H 1.08999 * 109.47023 * 24.86997 * 1 2 3 34 34 H 1.08998 * 109.47259 * 144.87304 * 1 2 3 35 35 H 1.07999 * 120.36633 * 359.97438 * 3 2 1 36 36 H 0.96692 * 114.00666 * 270.02386 * 5 4 3 37 37 H 1.07999 * 119.68393 * 180.02562 * 7 6 4 38 38 H 1.09002 * 109.96297 * 61.61890 * 12 11 9 39 39 H 1.09007 * 109.96161 * 300.37749 * 12 11 9 40 40 H 1.09002 * 109.15954 * 317.61316 * 15 13 12 41 41 H 1.09002 * 109.16014 * 76.85560 * 15 13 12 42 42 H 1.08996 * 109.67620 * 182.08068 * 16 15 13 43 43 H 1.08997 * 109.67573 * 302.62433 * 16 15 13 44 44 H 1.08991 * 109.97505 * 176.21533 * 17 16 15 45 45 H 1.09001 * 108.76082 * 55.97269 * 17 16 15 46 46 H 0.96995 * 120.00669 * 262.75986 * 20 18 17 47 47 H 0.97000 * 119.99119 * 180.02562 * 24 23 21 48 48 H 1.09002 * 110.84907 * 84.75028 * 31 11 9 49 49 H 1.08995 * 109.92636 * 322.20253 * 31 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1850 0.0000 4 6 3.6048 1.1472 -0.0058 5 8 4.3044 2.3076 -0.0121 6 7 4.2548 -0.0067 -0.0058 7 6 3.6204 -1.1601 0.0002 8 6 2.2255 -1.2044 0.0062 9 6 1.5171 -2.4994 0.0123 10 8 0.5731 -2.6725 0.7589 11 7 1.9165 -3.4900 -0.8097 12 6 2.9672 -3.3828 -1.8346 13 6 3.0542 -4.7638 -2.5406 14 1 4.0704 -5.0270 -2.8342 15 6 2.1081 -4.6960 -3.7412 16 6 1.7812 -6.0929 -4.2611 17 6 1.0699 -6.8654 -3.1632 18 6 2.0238 -7.0337 -1.9811 19 1 2.8859 -7.6184 -2.3020 20 7 1.3323 -7.7524 -0.9080 21 6 1.2580 -9.1195 -0.9368 22 1 1.7089 -9.6677 -1.7508 23 6 0.6023 -9.8006 0.0796 24 7 0.0524 -9.1323 1.0713 25 14 0.5004 -11.6654 0.0400 26 1 -0.7252 -12.0787 -0.6896 27 1 1.6958 -12.2119 -0.6511 28 1 0.4497 -12.1880 1.4291 29 6 2.5002 -5.7043 -1.4543 30 1 3.2680 -5.8710 -0.6987 31 6 1.3682 -4.8565 -0.8473 32 1 -0.3633 -0.0919 1.0235 33 1 -0.3633 0.9324 -0.4322 34 1 -0.3634 -0.8405 -0.5913 35 1 1.6935 2.1313 -0.0004 36 1 4.5034 2.6422 -0.8972 37 1 4.1848 -2.0809 0.0004 38 1 3.9217 -3.1439 -1.3655 39 1 2.7042 -2.6109 -2.5579 40 1 1.1846 -4.2006 -3.4414 41 1 2.5807 -4.1204 -4.5371 42 1 1.1369 -6.0171 -5.1369 43 1 2.7029 -6.6107 -4.5265 44 1 0.7664 -7.8445 -3.5335 45 1 0.1916 -6.3010 -2.8500 46 1 0.9270 -7.2601 -0.1772 47 1 -0.4055 -9.6083 1.7817 48 1 0.4789 -4.9005 -1.4761 49 1 1.1392 -5.1928 0.1639 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992803743.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:23 Heat of formation + Delta-G solvation = -53.540107 kcal Electronic energy + Delta-G solvation = -31035.028622 eV Core-core repulsion = 26961.171648 eV Total energy + Delta-G solvation = -4073.856975 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -42.22840 -41.32241 -39.80285 -38.03014 -37.02629 -35.49211 -34.93631 -33.32864 -32.52816 -31.25776 -30.40422 -29.06702 -27.92328 -26.38973 -25.57364 -24.56282 -23.40516 -22.82717 -22.08907 -20.95003 -19.78038 -19.45620 -19.19817 -18.59002 -17.95212 -17.38989 -16.97438 -16.78513 -16.56763 -16.05156 -15.54084 -15.37606 -15.25210 -15.11433 -15.00283 -14.58914 -14.54316 -14.09279 -13.99795 -13.84207 -13.77662 -13.57289 -13.44827 -13.15469 -12.98006 -12.80794 -12.74332 -12.72617 -12.45263 -12.28030 -12.15921 -11.95840 -11.89312 -11.31503 -11.27686 -11.16611 -11.00369 -10.73051 -10.69793 -10.53468 -10.12562 -9.69262 -8.97836 -7.92044 -5.20413 -0.48009 0.02739 1.46518 1.48100 1.49111 1.56359 1.79490 2.43661 2.56667 2.59741 3.25204 3.40673 3.43307 3.45513 3.52513 3.62748 3.77658 3.91025 4.10102 4.14683 4.20178 4.27181 4.32154 4.36113 4.40993 4.48025 4.56939 4.61969 4.63580 4.64666 4.65289 4.77677 4.79302 4.86959 4.93020 4.96757 5.10912 5.14502 5.21206 5.22559 5.30395 5.35463 5.38030 5.45121 5.54661 5.59132 5.72060 6.29913 6.39124 6.52835 6.76215 6.94757 7.35455 8.13139 8.34077 9.31576 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016812 B = 0.002675 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.099754 B =10463.481953 C =11186.537188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.018 3.982 3 C -0.182 4.182 4 C 0.332 3.668 5 O -0.486 6.486 6 N -0.526 5.526 7 C 0.166 3.834 8 C -0.204 4.204 9 C 0.575 3.425 10 O -0.573 6.573 11 N -0.606 5.606 12 C 0.095 3.905 13 C -0.077 4.077 14 H 0.130 0.870 15 C -0.108 4.108 16 C -0.109 4.109 17 C -0.129 4.129 18 C 0.189 3.811 19 H 0.051 0.949 20 N -0.741 5.741 21 C -0.231 4.231 22 H 0.079 0.921 23 C -0.081 4.081 24 N -0.973 5.973 25 Si 0.970 3.030 26 H -0.290 1.290 27 H -0.266 1.266 28 H -0.300 1.300 29 C -0.089 4.089 30 H 0.069 0.931 31 C 0.125 3.875 32 H 0.079 0.921 33 H 0.106 0.894 34 H 0.057 0.943 35 H 0.178 0.822 36 H 0.427 0.573 37 H 0.178 0.822 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.047 0.953 41 H 0.094 0.906 42 H 0.069 0.931 43 H 0.073 0.927 44 H 0.041 0.959 45 H 0.037 0.963 46 H 0.370 0.630 47 H 0.248 0.752 48 H 0.062 0.938 49 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.010 24.103 -12.595 28.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.010 3.990 3 C -0.203 4.203 4 C 0.154 3.846 5 O -0.297 6.297 6 N -0.245 5.245 7 C 0.009 3.991 8 C -0.210 4.210 9 C 0.364 3.636 10 O -0.453 6.453 11 N -0.338 5.338 12 C -0.026 4.026 13 C -0.096 4.096 14 H 0.148 0.852 15 C -0.145 4.145 16 C -0.147 4.147 17 C -0.169 4.169 18 C 0.081 3.919 19 H 0.069 0.931 20 N -0.381 5.381 21 C -0.363 4.363 22 H 0.097 0.903 23 C -0.273 4.273 24 N -0.625 5.625 25 Si 0.799 3.201 26 H -0.217 1.217 27 H -0.191 1.191 28 H -0.227 1.227 29 C -0.108 4.108 30 H 0.087 0.913 31 C 0.003 3.997 32 H 0.097 0.903 33 H 0.124 0.876 34 H 0.076 0.924 35 H 0.195 0.805 36 H 0.289 0.711 37 H 0.195 0.805 38 H 0.108 0.892 39 H 0.110 0.890 40 H 0.066 0.934 41 H 0.113 0.887 42 H 0.088 0.912 43 H 0.092 0.908 44 H 0.060 0.940 45 H 0.056 0.944 46 H 0.202 0.798 47 H 0.057 0.943 48 H 0.080 0.920 49 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 9.430 23.950 -11.635 28.247 hybrid contribution -1.625 -1.361 0.629 2.210 sum 7.805 22.589 -11.007 26.312 Atomic orbital electron populations 1.20891 0.88633 1.04066 1.03550 1.20455 0.97766 0.90847 0.89905 1.22145 0.93352 0.99847 1.04934 1.19552 0.87598 0.85362 0.92073 1.84687 1.75708 1.33156 1.36190 1.67259 1.42264 0.98665 1.16325 1.22909 0.89588 0.95795 0.90858 1.20717 0.95806 0.93224 1.11210 1.17993 0.82801 0.83397 0.79382 1.90817 1.30025 1.82273 1.42201 1.48459 1.38389 1.10969 1.36020 1.22827 0.90812 0.99003 0.89964 1.22329 1.01726 0.91576 0.93922 0.85239 1.21566 0.98736 0.97073 0.97128 1.21224 1.00773 0.95722 0.96982 1.21886 0.98878 0.99195 0.96970 1.19788 0.93745 0.90315 0.88077 0.93142 1.42796 1.65997 1.03301 1.26036 1.19630 1.27334 0.84350 1.04981 0.90330 1.25553 1.01993 1.02109 0.97602 1.69846 1.43355 1.35665 1.13586 0.85184 0.77999 0.80760 0.76125 1.21708 1.19088 1.22717 1.21601 0.96560 0.94197 0.98484 0.91282 1.21812 0.97296 0.80714 0.99911 0.90282 0.87583 0.92446 0.80497 0.71052 0.80493 0.89184 0.89036 0.93371 0.88708 0.91224 0.90799 0.94033 0.94401 0.79814 0.94328 0.91993 0.94193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.14 8.90 71.24 0.63 -1.51 16 2 C 0.02 0.36 5.94 -19.43 -0.12 0.25 16 3 C -0.18 -2.71 9.71 22.42 0.22 -2.49 16 4 C 0.33 5.66 7.74 84.81 0.66 6.32 16 5 O -0.49 -6.20 13.55 -88.02 -1.19 -7.39 16 6 N -0.53 -10.84 10.37 -307.80 -3.19 -14.03 16 7 C 0.17 3.41 9.61 85.04 0.82 4.23 16 8 C -0.20 -4.80 5.39 -20.00 -0.11 -4.90 16 9 C 0.58 17.54 6.69 86.72 0.58 18.12 16 10 O -0.57 -22.69 15.95 -3.99 -0.06 -22.75 16 11 N -0.61 -16.65 3.33 -815.35 -2.71 -19.36 16 12 C 0.10 1.71 5.21 87.06 0.45 2.17 16 13 C -0.08 -1.45 3.61 -9.65 -0.03 -1.48 16 14 H 0.13 1.78 8.14 -2.39 -0.02 1.76 16 15 C -0.11 -1.95 4.61 30.46 0.14 -1.81 16 16 C -0.11 -2.40 5.88 30.10 0.18 -2.22 16 17 C -0.13 -4.25 5.24 30.18 0.16 -4.09 16 18 C 0.19 6.92 2.48 44.19 0.11 7.03 16 19 H 0.05 1.85 8.08 -2.39 -0.02 1.83 16 20 N -0.74 -36.93 5.03 -326.74 -1.64 -38.57 16 21 C -0.23 -12.72 9.89 84.03 0.83 -11.89 16 22 H 0.08 4.11 7.83 -2.91 -0.02 4.08 16 23 C -0.08 -4.70 5.50 84.86 0.47 -4.24 16 24 N -0.97 -61.40 13.06 21.65 0.28 -61.12 16 25 Si 0.97 46.82 29.55 68.60 2.03 48.85 16 26 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 27 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 28 H -0.30 -14.77 7.11 99.48 0.71 -14.07 16 29 C -0.09 -2.65 2.54 -10.89 -0.03 -2.68 16 30 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 31 C 0.13 4.28 5.01 86.54 0.43 4.72 16 32 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.11 1.18 8.07 -2.39 -0.02 1.17 16 34 H 0.06 1.31 7.10 -2.39 -0.02 1.30 16 35 H 0.18 1.49 8.06 -2.91 -0.02 1.47 16 36 H 0.43 0.71 9.06 -74.06 -0.67 0.04 16 37 H 0.18 3.09 6.16 -2.91 -0.02 3.07 16 38 H 0.09 1.27 5.76 -2.39 -0.01 1.26 16 39 H 0.09 1.31 7.74 -2.38 -0.02 1.30 16 40 H 0.05 1.03 7.08 -2.39 -0.02 1.01 16 41 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 44 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.04 1.36 6.79 -2.39 -0.02 1.34 16 46 H 0.37 20.37 6.44 -92.71 -0.60 19.77 16 47 H 0.25 15.29 8.31 -92.71 -0.77 14.52 16 48 H 0.06 2.24 6.07 -2.39 -0.01 2.23 16 49 H 0.04 1.71 7.44 -2.39 -0.02 1.69 16 Total: -1.00 -78.82 383.09 -1.37 -80.19 By element: Atomic # 1 Polarization: 28.95 SS G_CDS: -0.27 Total: 28.68 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: 5.39 Total: 5.51 kcal Atomic # 7 Polarization: -125.82 SS G_CDS: -7.26 Total: -133.08 kcal Atomic # 8 Polarization: -28.89 SS G_CDS: -1.26 Total: -30.14 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.85 kcal Total: -78.82 -1.37 -80.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992803743.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.651 kcal (2) G-P(sol) polarization free energy of solvation -78.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds