Wall clock time and date at job start Wed Apr 1 2020 05:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35917 * 116.99947 * 2 1 4 4 C 1.38857 * 120.40631 * 359.97438 * 3 2 1 5 5 N 1.31879 * 121.00091 * 179.97438 * 4 3 2 6 6 C 1.31683 * 121.94156 * 0.03047 * 5 4 3 7 7 C 1.39533 * 120.68990 * 359.97438 * 6 5 4 8 8 C 1.47854 * 120.52846 * 180.02562 * 7 6 5 9 9 O 1.21555 * 119.99702 * 174.14523 * 8 7 6 10 10 N 1.34772 * 120.00097 * 354.15224 * 8 7 6 11 11 C 1.46502 * 120.00001 * 179.97438 * 10 8 7 12 12 H 1.09009 * 115.56333 * 350.71007 * 11 10 8 13 13 C 1.53031 * 117.50482 * 136.41532 * 11 10 8 14 14 C 1.52814 * 117.50540 * 205.00109 * 11 10 8 15 15 C 1.53183 * 117.71483 * 144.90136 * 14 11 10 16 16 C 1.53353 * 108.76611 * 158.87880 * 15 14 11 17 17 N 1.46841 * 108.81709 * 51.30210 * 16 15 14 18 18 C 1.36938 * 120.37724 * 123.10867 * 17 16 15 19 19 H 1.08006 * 120.00158 * 331.59958 * 18 17 16 20 20 C 1.38811 * 119.99893 * 151.60258 * 18 17 16 21 21 N 1.31614 * 120.00100 * 344.39272 * 20 18 17 22 22 Si 1.86800 * 119.99973 * 164.38938 * 20 18 17 23 23 H 1.48503 * 109.47288 * 180.02562 * 22 20 18 24 24 H 1.48508 * 109.47096 * 299.99919 * 22 20 18 25 25 H 1.48498 * 109.47395 * 60.00095 * 22 20 18 26 26 C 1.46843 * 119.24212 * 303.38625 * 17 16 15 27 27 C 1.52858 * 109.07834 * 56.57896 * 26 17 16 28 28 C 1.38841 * 120.40686 * 180.32167 * 3 2 1 29 29 C 1.50704 * 120.88057 * 0.02562 * 28 3 2 30 30 H 1.08999 * 109.46814 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46665 * 299.99756 * 1 2 3 32 32 H 1.08995 * 109.46916 * 60.00257 * 1 2 3 33 33 H 1.07995 * 119.49830 * 0.02562 * 4 3 2 34 34 H 1.07993 * 119.65724 * 179.97438 * 6 5 4 35 35 H 0.96999 * 120.00651 * 359.97438 * 10 8 7 36 36 H 1.09006 * 117.50369 * 0.02562 * 13 11 10 37 37 H 1.09006 * 117.53132 * 214.94990 * 13 11 10 38 38 H 1.08991 * 109.59017 * 39.09345 * 15 14 11 39 39 H 1.09001 * 109.58868 * 278.65542 * 15 14 11 40 40 H 1.09001 * 109.58077 * 291.51006 * 16 15 14 41 41 H 1.08996 * 109.58240 * 171.10677 * 16 15 14 42 42 H 0.97004 * 120.00166 * 179.97438 * 21 20 18 43 43 H 1.08995 * 109.58081 * 176.41907 * 26 17 16 44 44 H 1.09005 * 109.57228 * 296.81508 * 26 17 16 45 45 H 1.09004 * 109.66787 * 189.05350 * 27 26 17 46 46 H 1.08996 * 109.45146 * 68.65243 * 27 26 17 47 47 H 1.08996 * 109.46957 * 263.89736 * 29 28 3 48 48 H 1.09006 * 109.46864 * 23.89504 * 29 28 3 49 49 H 1.09000 * 109.47174 * 143.88983 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2981 2.3809 -0.0005 5 7 1.8846 3.5621 0.0000 6 6 3.1953 3.6892 0.0004 7 6 4.0199 2.5636 0.0009 8 6 5.4911 2.7104 0.0019 9 8 6.1998 1.7287 0.1097 10 7 6.0465 3.9326 -0.1165 11 6 7.5043 4.0781 -0.1149 12 1 8.0663 3.1803 0.1426 13 6 8.1210 5.0266 -1.1454 14 6 8.0789 5.4223 0.3303 15 6 9.3988 5.4105 1.1076 16 6 10.0512 6.7936 0.9929 17 7 9.0638 7.8153 1.3639 18 6 9.3287 8.6991 2.3758 19 1 9.9866 8.4140 3.1834 20 6 8.7514 9.9614 2.3635 21 7 8.2090 10.4263 1.2580 22 14 8.7443 11.0004 3.9159 23 1 8.0727 12.2961 3.6413 24 1 8.0120 10.2815 4.9893 25 1 10.1420 11.2494 4.3513 26 6 7.7867 7.8743 0.6415 27 6 7.0910 6.5172 0.7450 28 6 3.4321 1.2936 -0.0067 29 6 4.2810 0.0484 -0.0147 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 0.2197 2.3226 -0.0005 34 1 3.6366 4.6748 0.0004 35 1 5.4811 4.7161 -0.2028 36 1 7.4420 5.5427 -1.8243 37 1 9.0888 4.7533 -1.5659 38 1 10.0641 4.6567 0.6866 39 1 9.2036 5.1844 2.1558 40 1 10.3796 6.9587 -0.0332 41 1 10.9067 6.8510 1.6659 42 1 7.8053 11.3083 1.2495 43 1 7.1524 8.6427 1.0833 44 1 7.9708 8.1083 -0.4071 45 1 6.2249 6.4976 0.0833 46 1 6.7715 6.3506 1.7736 47 1 4.5811 -0.1932 1.0049 48 1 3.7073 -0.7798 -0.4306 49 1 5.1686 0.2178 -0.6243 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016689060.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:41 Heat of formation + Delta-G solvation = 14.702984 kcal Electronic energy + Delta-G solvation = -30148.234287 eV Core-core repulsion = 26077.336555 eV Total energy + Delta-G solvation = -4070.897732 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.34549 -39.92797 -38.70037 -38.03990 -35.58248 -33.96966 -33.42789 -31.70124 -30.68607 -30.14593 -28.36940 -28.08808 -27.89318 -24.56534 -24.33467 -22.85594 -22.48180 -21.87018 -20.97009 -20.47292 -18.68015 -18.19238 -17.77897 -16.87891 -16.65391 -16.40565 -16.30963 -15.90287 -15.17940 -14.87306 -14.61301 -14.34266 -14.13871 -13.87270 -13.59559 -13.44718 -13.25650 -13.06474 -13.00900 -12.88829 -12.64844 -12.49637 -12.34371 -12.07800 -11.90863 -11.71260 -11.52149 -11.38719 -10.96571 -10.72318 -10.51981 -10.30765 -10.30334 -9.96392 -9.81934 -9.73166 -9.60644 -9.56814 -9.36921 -8.83866 -8.50329 -8.45479 -6.64227 -5.78417 -3.22571 0.28091 0.86693 2.57227 2.62419 3.06817 3.38277 3.44000 3.45388 3.47098 3.97397 4.12925 4.17020 4.38295 4.41391 4.49532 4.58989 4.66402 4.79947 4.88651 4.95659 5.03579 5.11366 5.12373 5.27275 5.39725 5.42884 5.49880 5.59405 5.62562 5.80431 5.84800 5.91152 6.03391 6.05234 6.09900 6.25033 6.27329 6.43847 6.52935 6.55735 6.63786 6.70827 6.72462 6.82202 6.99296 7.34462 7.39491 7.48933 7.67696 7.78670 8.06145 8.46796 9.22186 9.85444 10.41349 11.29013 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016450 B = 0.002329 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.718960 B =12020.846442 C =13122.348934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.306 6.306 3 C 0.064 3.936 4 C 0.041 3.959 5 N -0.454 5.454 6 C 0.104 3.896 7 C -0.153 4.153 8 C 0.566 3.434 9 O -0.529 6.529 10 N -0.686 5.686 11 C 0.068 3.932 12 H 0.134 0.866 13 C -0.181 4.181 14 C -0.095 4.095 15 C -0.098 4.098 16 C 0.149 3.851 17 N -0.590 5.590 18 C -0.251 4.251 19 H 0.064 0.936 20 C 0.001 3.999 21 N -0.904 5.904 22 Si 0.903 3.097 23 H -0.291 1.291 24 H -0.284 1.284 25 H -0.283 1.283 26 C 0.171 3.829 27 C -0.106 4.106 28 C -0.011 4.011 29 C -0.113 4.113 30 H 0.105 0.895 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.163 0.837 34 H 0.163 0.837 35 H 0.402 0.598 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.053 0.947 39 H 0.063 0.937 40 H 0.020 0.980 41 H 0.055 0.945 42 H 0.254 0.746 43 H 0.094 0.906 44 H 0.017 0.983 45 H 0.043 0.957 46 H 0.061 0.939 47 H 0.080 0.920 48 H 0.067 0.933 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.888 -19.546 -5.313 24.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.218 6.218 3 C 0.017 3.983 4 C -0.116 4.116 5 N -0.163 5.163 6 C -0.056 4.056 7 C -0.158 4.158 8 C 0.353 3.647 9 O -0.407 6.407 10 N -0.336 5.336 11 C -0.037 4.037 12 H 0.151 0.849 13 C -0.220 4.220 14 C -0.097 4.097 15 C -0.138 4.138 16 C 0.023 3.977 17 N -0.312 5.312 18 C -0.381 4.381 19 H 0.082 0.918 20 C -0.197 4.197 21 N -0.548 5.548 22 Si 0.733 3.267 23 H -0.216 1.216 24 H -0.211 1.211 25 H -0.209 1.209 26 C 0.045 3.955 27 C -0.145 4.145 28 C -0.020 4.020 29 C -0.169 4.169 30 H 0.123 0.877 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.180 0.820 34 H 0.180 0.820 35 H 0.238 0.762 36 H 0.112 0.888 37 H 0.117 0.883 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.038 0.962 41 H 0.073 0.927 42 H 0.064 0.936 43 H 0.112 0.888 44 H 0.035 0.965 45 H 0.062 0.938 46 H 0.080 0.920 47 H 0.099 0.901 48 H 0.086 0.914 49 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -13.895 -19.531 -5.261 24.540 hybrid contribution -0.247 0.481 0.653 0.847 sum -14.141 -19.050 -4.609 24.168 Atomic orbital electron populations 1.23161 0.77851 1.04569 1.01655 1.86097 1.21611 1.25472 1.88604 1.19760 0.92317 0.86092 1.00153 1.23107 1.00772 0.87065 1.00699 1.67553 1.11833 1.25923 1.11031 1.22898 0.88778 0.98187 0.95698 1.20727 0.94731 0.93845 1.06545 1.17840 0.86605 0.83455 0.76809 1.90728 1.63037 1.37329 1.49564 1.45312 1.07233 1.08231 1.72798 1.21920 0.79725 0.96524 1.05538 0.84860 1.23543 1.02358 1.02882 0.93168 1.21976 0.98386 0.93897 0.95432 1.21698 0.93382 0.99538 0.99162 1.20856 0.91960 0.87384 0.97530 1.43949 1.12728 1.34707 1.39796 1.19169 1.27610 0.92335 0.98984 0.91804 1.25047 1.01684 0.96223 0.96748 1.69988 1.42316 1.17734 1.24807 0.86367 0.77830 0.79446 0.83104 1.21642 1.21061 1.20896 1.20697 0.87590 0.92156 0.95020 1.21755 0.95503 0.97349 0.99889 1.19835 0.90802 0.95892 0.95493 1.20920 0.99473 0.92462 1.04054 0.87711 0.92264 0.92307 0.82044 0.82025 0.76155 0.88833 0.88339 0.92811 0.91794 0.96227 0.92665 0.93588 0.88777 0.96482 0.93814 0.91999 0.90111 0.91447 0.88348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.82 101.05 0.99 1.09 16 2 O -0.31 -2.66 9.57 -19.48 -0.19 -2.84 16 3 C 0.06 0.65 6.68 -39.13 -0.26 0.39 16 4 C 0.04 0.39 10.21 -17.30 -0.18 0.21 16 5 N -0.45 -5.20 10.34 -12.79 -0.13 -5.33 16 6 C 0.10 1.16 10.70 -17.13 -0.18 0.97 16 7 C -0.15 -1.84 5.89 -104.84 -0.62 -2.46 16 8 C 0.57 7.64 7.72 -12.33 -0.10 7.55 16 9 O -0.53 -8.30 13.08 5.32 0.07 -8.23 16 10 N -0.69 -8.74 5.30 -54.82 -0.29 -9.03 16 11 C 0.07 0.96 6.14 -68.01 -0.42 0.54 16 12 H 0.13 1.95 7.40 -51.92 -0.38 1.57 16 13 C -0.18 -2.52 9.86 -26.80 -0.26 -2.79 16 14 C -0.10 -1.52 1.94 -154.49 -0.30 -1.82 16 15 C -0.10 -1.66 5.83 -26.45 -0.15 -1.82 16 16 C 0.15 3.04 6.52 -3.67 -0.02 3.02 16 17 N -0.59 -14.37 2.95 -172.56 -0.51 -14.88 16 18 C -0.25 -6.77 9.56 -15.06 -0.14 -6.92 16 19 H 0.06 1.70 7.88 -52.48 -0.41 1.28 16 20 C 0.00 0.03 4.95 -17.43 -0.09 -0.05 16 21 N -0.90 -25.71 11.06 55.49 0.61 -25.10 16 22 Si 0.90 21.47 29.58 -169.99 -5.03 16.45 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 26 C 0.17 3.91 5.36 -3.93 -0.02 3.89 16 27 C -0.11 -1.88 5.36 -26.71 -0.14 -2.02 16 28 C -0.01 -0.13 5.97 -103.76 -0.62 -0.75 16 29 C -0.11 -1.25 8.69 36.01 0.31 -0.93 16 30 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.21 7.68 -51.93 -0.40 -0.19 16 32 H 0.06 0.20 7.67 -51.93 -0.40 -0.20 16 33 H 0.16 1.05 6.30 -52.49 -0.33 0.72 16 34 H 0.16 1.50 6.46 -52.49 -0.34 1.16 16 35 H 0.40 4.49 5.21 -40.82 -0.21 4.28 16 36 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.05 0.78 8.10 -51.93 -0.42 0.36 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.05 1.11 7.92 -51.93 -0.41 0.70 16 42 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 43 H 0.09 2.43 5.83 -51.93 -0.30 2.13 16 44 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.04 0.66 6.75 -51.93 -0.35 0.31 16 46 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 47 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 48 H 0.07 0.65 7.45 -51.93 -0.39 0.27 16 49 H 0.10 1.21 5.97 -51.93 -0.31 0.90 16 LS Contribution 388.45 15.07 5.85 5.85 Total: -1.00 -31.73 388.45 -8.99 -40.72 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -7.18 Total: 4.29 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: -2.20 Total: -1.88 kcal Atomic # 7 Polarization: -54.03 SS G_CDS: -0.32 Total: -54.35 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: -0.12 Total: -11.07 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.03 Total: 16.45 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.73 -8.99 -40.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016689060.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.418 kcal (2) G-P(sol) polarization free energy of solvation -31.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds