Wall clock time and date at job start Wed Apr 1 2020 05:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35921 * 116.99938 * 2 1 4 4 C 1.38852 * 120.40837 * 359.97438 * 3 2 1 5 5 N 1.31882 * 121.00326 * 179.72183 * 4 3 2 6 6 C 1.31683 * 121.94111 * 0.28181 * 5 4 3 7 7 C 1.39531 * 120.68666 * 0.02562 * 6 5 4 8 8 C 1.47857 * 120.52676 * 180.02562 * 7 6 5 9 9 O 1.21551 * 119.99902 * 177.36924 * 8 7 6 10 10 N 1.34784 * 120.00018 * 357.37301 * 8 7 6 11 11 C 1.46497 * 119.99833 * 179.97438 * 10 8 7 12 12 H 1.09004 * 115.55506 * 9.31731 * 11 10 8 13 13 C 1.53029 * 117.50185 * 223.58191 * 11 10 8 14 14 C 1.52817 * 117.49792 * 154.99723 * 11 10 8 15 15 C 1.53182 * 117.71707 * 359.86451 * 14 11 10 16 16 C 1.53355 * 108.77031 * 158.88739 * 15 14 11 17 17 N 1.46837 * 108.81645 * 51.30331 * 16 15 14 18 18 C 1.36940 * 120.38065 * 123.12202 * 17 16 15 19 19 H 1.08002 * 120.00168 * 322.27787 * 18 17 16 20 20 C 1.38807 * 119.99859 * 142.27927 * 18 17 16 21 21 N 1.31625 * 120.00139 * 168.56122 * 20 18 17 22 22 Si 1.86796 * 120.00074 * 348.55560 * 20 18 17 23 23 H 1.48502 * 109.47178 * 91.25084 * 22 20 18 24 24 H 1.48505 * 109.47458 * 211.24750 * 22 20 18 25 25 H 1.48497 * 109.47397 * 331.25047 * 22 20 18 26 26 C 1.46846 * 119.23838 * 303.10236 * 17 16 15 27 27 C 1.53187 * 117.71219 * 215.09689 * 14 11 10 28 28 C 1.38851 * 120.40887 * 180.29228 * 3 2 1 29 29 C 1.50697 * 120.87647 * 359.97438 * 28 3 2 30 30 H 1.09005 * 109.47486 * 300.00263 * 1 2 3 31 31 H 1.09000 * 109.47448 * 59.99650 * 1 2 3 32 32 H 1.08998 * 109.47482 * 180.02562 * 1 2 3 33 33 H 1.08002 * 119.49544 * 0.02562 * 4 3 2 34 34 H 1.07991 * 119.65527 * 179.97438 * 6 5 4 35 35 H 0.96997 * 119.99879 * 359.97438 * 10 8 7 36 36 H 1.08997 * 117.50532 * 0.02562 * 13 11 10 37 37 H 1.09002 * 117.49998 * 145.04812 * 13 11 10 38 38 H 1.09003 * 109.58595 * 278.67071 * 15 14 11 39 39 H 1.08996 * 109.58559 * 39.09922 * 15 14 11 40 40 H 1.08995 * 109.57737 * 291.50298 * 16 15 14 41 41 H 1.09000 * 109.57588 * 171.10715 * 16 15 14 42 42 H 0.97000 * 120.00135 * 179.97438 * 21 20 18 43 43 H 1.09001 * 109.58017 * 297.11019 * 26 17 16 44 44 H 1.08999 * 109.58468 * 176.70263 * 26 17 16 45 45 H 1.08998 * 109.59066 * 320.91224 * 27 14 11 46 46 H 1.09007 * 109.58248 * 81.34159 * 27 14 11 47 47 H 1.09006 * 109.47188 * 262.68916 * 29 28 3 48 48 H 1.09005 * 109.47475 * 22.68099 * 29 28 3 49 49 H 1.08999 * 109.47660 * 142.68825 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2981 2.3809 -0.0005 5 7 1.8846 3.5622 0.0049 6 6 3.1953 3.6892 0.0056 7 6 4.0198 2.5636 0.0000 8 6 5.4911 2.7104 0.0014 9 8 6.2002 1.7241 0.0447 10 7 6.0459 3.9378 -0.0454 11 6 7.5037 4.0832 -0.0435 12 1 8.0686 3.1586 -0.1623 13 6 8.1044 5.1689 0.8523 14 6 8.0871 5.3515 -0.6651 15 6 7.1075 6.3754 -1.2470 16 6 7.8056 7.7388 -1.3222 17 7 9.0918 7.5749 -2.0113 18 6 9.3744 8.3068 -3.1337 19 1 8.5970 8.5109 -3.8552 20 6 10.6599 8.7862 -3.3441 21 7 10.9910 9.2903 -4.5141 22 14 11.9199 8.7163 -1.9669 23 1 12.6771 7.4417 -2.0530 24 1 12.8590 9.8594 -2.0965 25 1 11.2257 8.7920 -0.6564 26 6 10.0717 6.6174 -1.4828 27 6 9.4197 5.2313 -1.4110 28 6 3.4321 1.2937 -0.0061 29 6 4.2810 0.0486 -0.0123 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 0.2197 2.3226 -0.0005 34 1 3.6365 4.6749 0.0098 35 1 5.4800 4.7249 -0.0803 36 1 7.4150 5.7746 1.4405 37 1 9.0647 4.9585 1.3231 38 1 6.8047 6.0642 -2.2468 39 1 6.2307 6.4488 -0.6036 40 1 7.9766 8.1176 -0.3147 41 1 7.1806 8.4389 -1.8766 42 1 11.8893 9.6257 -4.6610 43 1 10.3832 6.9266 -0.4851 44 1 10.9383 6.5797 -2.1429 45 1 10.0770 4.5454 -0.8765 46 1 9.2415 4.8586 -2.4197 47 1 4.5983 -0.1799 1.0052 48 1 3.7005 -0.7851 -0.4075 49 1 5.1582 0.2099 -0.6388 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016689062.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:45 Heat of formation + Delta-G solvation = 17.650013 kcal Electronic energy + Delta-G solvation = -30135.536530 eV Core-core repulsion = 26064.766591 eV Total energy + Delta-G solvation = -4070.769939 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 16.46 seconds Orbital eigenvalues (eV) -41.41970 -40.04770 -38.85052 -38.14541 -35.83385 -34.03678 -33.49687 -31.85674 -30.90152 -30.49457 -28.72900 -28.15813 -28.00222 -24.63061 -24.20845 -23.02987 -22.92319 -21.93336 -21.08495 -20.71392 -18.78249 -18.40157 -17.84707 -16.94684 -16.73276 -16.46062 -16.36422 -16.13037 -15.24916 -15.18974 -14.67199 -14.45269 -14.25060 -13.99657 -13.88780 -13.71973 -13.33513 -13.09470 -13.04673 -12.94753 -12.91318 -12.54862 -12.32521 -12.24589 -12.13745 -11.95430 -11.87913 -11.70754 -11.23781 -10.83000 -10.62842 -10.39160 -10.30561 -9.98105 -9.90202 -9.82755 -9.66647 -9.55503 -9.50693 -8.90222 -8.74438 -8.51932 -6.80416 -5.95228 -3.43767 0.20476 0.79824 2.50025 2.54283 2.96621 3.31431 3.39526 3.46491 3.49996 3.89360 4.01014 4.06489 4.30046 4.34457 4.51669 4.52622 4.62027 4.72319 4.77330 4.82245 4.91246 4.95176 4.99258 5.13415 5.20641 5.29094 5.36109 5.39374 5.53990 5.67559 5.78760 5.83011 5.84601 5.88937 5.90931 6.04059 6.14445 6.19807 6.29706 6.34323 6.39593 6.45142 6.60984 6.66821 6.69711 6.70567 6.93911 7.27319 7.40931 7.96668 8.06929 8.37431 8.96255 9.70694 10.12877 11.20467 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.024711 B = 0.002172 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.844736 B =12887.462920 C =13394.525988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.305 6.305 3 C 0.065 3.935 4 C 0.041 3.959 5 N -0.455 5.455 6 C 0.103 3.897 7 C -0.154 4.154 8 C 0.567 3.433 9 O -0.526 6.526 10 N -0.688 5.688 11 C 0.074 3.926 12 H 0.136 0.864 13 C -0.183 4.183 14 C -0.100 4.100 15 C -0.100 4.100 16 C 0.153 3.847 17 N -0.605 5.605 18 C -0.264 4.264 19 H 0.081 0.919 20 C 0.028 3.972 21 N -0.912 5.912 22 Si 0.891 3.109 23 H -0.287 1.287 24 H -0.304 1.304 25 H -0.268 1.268 26 C 0.130 3.870 27 C -0.099 4.099 28 C -0.010 4.010 29 C -0.115 4.115 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.105 0.895 33 H 0.163 0.837 34 H 0.161 0.839 35 H 0.401 0.599 36 H 0.094 0.906 37 H 0.100 0.900 38 H 0.069 0.931 39 H 0.049 0.951 40 H 0.023 0.977 41 H 0.065 0.935 42 H 0.263 0.737 43 H 0.027 0.973 44 H 0.070 0.930 45 H 0.056 0.944 46 H 0.070 0.930 47 H 0.080 0.920 48 H 0.068 0.932 49 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.895 -17.334 12.366 29.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.217 6.217 3 C 0.018 3.982 4 C -0.116 4.116 5 N -0.164 5.164 6 C -0.056 4.056 7 C -0.159 4.159 8 C 0.354 3.646 9 O -0.404 6.404 10 N -0.338 5.338 11 C -0.032 4.032 12 H 0.154 0.846 13 C -0.221 4.221 14 C -0.101 4.101 15 C -0.139 4.139 16 C 0.027 3.973 17 N -0.328 5.328 18 C -0.393 4.393 19 H 0.098 0.902 20 C -0.172 4.172 21 N -0.555 5.555 22 Si 0.722 3.278 23 H -0.215 1.215 24 H -0.232 1.232 25 H -0.193 1.193 26 C 0.005 3.995 27 C -0.138 4.138 28 C -0.019 4.019 29 C -0.171 4.171 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.123 0.877 33 H 0.180 0.820 34 H 0.179 0.821 35 H 0.237 0.763 36 H 0.113 0.887 37 H 0.118 0.882 38 H 0.088 0.912 39 H 0.067 0.933 40 H 0.041 0.959 41 H 0.083 0.917 42 H 0.073 0.927 43 H 0.045 0.955 44 H 0.088 0.912 45 H 0.075 0.925 46 H 0.089 0.911 47 H 0.098 0.902 48 H 0.086 0.914 49 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -19.713 -17.410 12.283 29.027 hybrid contribution 0.652 -0.129 0.707 0.970 sum -19.061 -17.540 12.989 28.977 Atomic orbital electron populations 1.23168 0.77796 1.04634 1.01658 1.86102 1.21654 1.25431 1.88547 1.19769 0.92322 0.86125 1.00008 1.23107 1.00792 0.87046 1.00657 1.67544 1.11800 1.25960 1.11089 1.22852 0.88807 0.98066 0.95906 1.20704 0.94647 0.93880 1.06680 1.17853 0.86655 0.83475 0.76645 1.90734 1.62992 1.37157 1.49474 1.45299 1.07089 1.07743 1.73637 1.21898 0.79837 0.95739 1.05679 0.84626 1.23580 1.02642 1.01903 0.93975 1.21940 0.98290 0.95941 0.93946 1.21641 0.95458 0.96776 1.00010 1.20887 0.87764 0.93136 0.95554 1.44213 1.14566 1.43680 1.30379 1.18875 0.96832 1.27044 0.96513 0.90185 1.25538 0.98166 0.96913 0.96564 1.69773 1.19882 1.43936 1.21879 0.86782 0.81084 0.76120 0.83818 1.21467 1.23175 1.19279 1.21332 0.93055 0.87872 0.97252 1.21700 0.93084 0.99345 0.99696 1.19849 0.90824 0.95914 0.95319 1.20946 0.99602 0.92479 1.04073 0.92294 0.92241 0.87662 0.82005 0.82149 0.76253 0.88735 0.88189 0.91231 0.93266 0.95853 0.91674 0.92728 0.95493 0.91164 0.92535 0.91129 0.90189 0.91361 0.88113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.82 101.05 0.99 1.08 16 2 O -0.31 -2.49 9.55 -19.49 -0.19 -2.68 16 3 C 0.07 0.62 6.68 -39.13 -0.26 0.36 16 4 C 0.04 0.36 10.21 -17.30 -0.18 0.18 16 5 N -0.45 -4.72 10.34 -12.79 -0.13 -4.85 16 6 C 0.10 1.02 10.71 -17.13 -0.18 0.84 16 7 C -0.15 -1.70 5.89 -104.84 -0.62 -2.32 16 8 C 0.57 7.08 7.75 -12.32 -0.10 6.98 16 9 O -0.53 -7.85 13.03 5.32 0.07 -7.78 16 10 N -0.69 -7.81 5.30 -54.82 -0.29 -8.10 16 11 C 0.07 0.95 6.14 -68.01 -0.42 0.53 16 12 H 0.14 1.88 7.40 -51.93 -0.38 1.49 16 13 C -0.18 -2.29 9.86 -26.79 -0.26 -2.55 16 14 C -0.10 -1.46 1.94 -154.49 -0.30 -1.76 16 15 C -0.10 -1.49 5.37 -26.45 -0.14 -1.63 16 16 C 0.15 2.86 6.51 -3.67 -0.02 2.84 16 17 N -0.60 -13.92 2.60 -172.26 -0.45 -14.37 16 18 C -0.26 -7.26 9.96 -15.06 -0.15 -7.41 16 19 H 0.08 2.38 8.06 -52.49 -0.42 1.95 16 20 C 0.03 0.79 5.33 -17.43 -0.09 0.70 16 21 N -0.91 -27.84 13.97 55.49 0.78 -27.07 16 22 Si 0.89 22.28 24.40 -169.99 -4.15 18.13 16 23 H -0.29 -6.94 6.74 56.52 0.38 -6.55 16 24 H -0.30 -7.74 7.11 56.52 0.40 -7.34 16 25 H -0.27 -6.53 6.45 56.52 0.36 -6.17 16 26 C 0.13 2.74 4.19 -3.67 -0.02 2.73 16 27 C -0.10 -1.68 5.83 -26.45 -0.15 -1.84 16 28 C -0.01 -0.11 5.97 -103.76 -0.62 -0.73 16 29 C -0.12 -1.21 8.71 36.00 0.31 -0.90 16 30 H 0.06 0.17 7.68 -51.93 -0.40 -0.23 16 31 H 0.06 0.18 7.67 -51.93 -0.40 -0.22 16 32 H 0.11 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.16 0.93 6.30 -52.49 -0.33 0.60 16 34 H 0.16 1.21 6.42 -52.49 -0.34 0.87 16 35 H 0.40 3.75 5.19 -40.82 -0.21 3.53 16 36 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.05 0.58 6.75 -51.93 -0.35 0.23 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.06 1.23 7.92 -51.93 -0.41 0.82 16 42 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 43 H 0.03 0.56 6.98 -51.93 -0.36 0.20 16 44 H 0.07 1.63 4.91 -51.93 -0.26 1.37 16 45 H 0.06 0.84 8.10 -51.93 -0.42 0.42 16 46 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 47 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 48 H 0.07 0.64 7.42 -51.93 -0.39 0.25 16 49 H 0.10 1.22 5.95 -51.93 -0.31 0.91 16 LS Contribution 382.40 15.07 5.76 5.76 Total: -1.00 -33.27 382.40 -7.93 -41.21 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -7.13 Total: 2.63 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: -2.21 Total: -2.89 kcal Atomic # 7 Polarization: -54.29 SS G_CDS: -0.09 Total: -54.38 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: -0.12 Total: -10.46 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.15 Total: 18.13 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.27 -7.93 -41.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016689062.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.855 kcal (2) G-P(sol) polarization free energy of solvation -33.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 16.46 seconds