Wall clock time and date at job start Wed Apr 1 2020 05:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35921 * 116.99938 * 2 1 4 4 C 1.38852 * 120.40837 * 359.97438 * 3 2 1 5 5 N 1.31882 * 121.00326 * 179.72183 * 4 3 2 6 6 C 1.31683 * 121.94111 * 0.28181 * 5 4 3 7 7 C 1.39531 * 120.68666 * 0.02562 * 6 5 4 8 8 C 1.47857 * 120.52676 * 180.02562 * 7 6 5 9 9 O 1.21551 * 119.99902 * 177.36924 * 8 7 6 10 10 N 1.34784 * 120.00018 * 357.37301 * 8 7 6 11 11 C 1.46497 * 119.99833 * 179.97438 * 10 8 7 12 12 H 1.09004 * 115.55506 * 9.31731 * 11 10 8 13 13 C 1.53029 * 117.50185 * 223.58191 * 11 10 8 14 14 C 1.52817 * 117.49792 * 154.99723 * 11 10 8 15 15 C 1.53182 * 117.71707 * 359.86451 * 14 11 10 16 16 C 1.53355 * 108.77031 * 158.88739 * 15 14 11 17 17 N 1.46837 * 108.81645 * 51.30331 * 16 15 14 18 18 C 1.36940 * 120.38065 * 123.12202 * 17 16 15 19 19 H 1.08002 * 120.00168 * 322.27787 * 18 17 16 20 20 C 1.38807 * 119.99859 * 142.27927 * 18 17 16 21 21 N 1.31625 * 120.00139 * 168.56122 * 20 18 17 22 22 Si 1.86796 * 120.00074 * 348.55560 * 20 18 17 23 23 H 1.48502 * 109.47178 * 91.25084 * 22 20 18 24 24 H 1.48505 * 109.47458 * 211.24750 * 22 20 18 25 25 H 1.48497 * 109.47397 * 331.25047 * 22 20 18 26 26 C 1.46846 * 119.23838 * 303.10236 * 17 16 15 27 27 C 1.53187 * 117.71219 * 215.09689 * 14 11 10 28 28 C 1.38851 * 120.40887 * 180.29228 * 3 2 1 29 29 C 1.50697 * 120.87647 * 359.97438 * 28 3 2 30 30 H 1.09005 * 109.47486 * 300.00263 * 1 2 3 31 31 H 1.09000 * 109.47448 * 59.99650 * 1 2 3 32 32 H 1.08998 * 109.47482 * 180.02562 * 1 2 3 33 33 H 1.08002 * 119.49544 * 0.02562 * 4 3 2 34 34 H 1.07991 * 119.65527 * 179.97438 * 6 5 4 35 35 H 0.96997 * 119.99879 * 359.97438 * 10 8 7 36 36 H 1.08997 * 117.50532 * 0.02562 * 13 11 10 37 37 H 1.09002 * 117.49998 * 145.04812 * 13 11 10 38 38 H 1.09003 * 109.58595 * 278.67071 * 15 14 11 39 39 H 1.08996 * 109.58559 * 39.09922 * 15 14 11 40 40 H 1.08995 * 109.57737 * 291.50298 * 16 15 14 41 41 H 1.09000 * 109.57588 * 171.10715 * 16 15 14 42 42 H 0.97000 * 120.00135 * 179.97438 * 21 20 18 43 43 H 1.09001 * 109.58017 * 297.11019 * 26 17 16 44 44 H 1.08999 * 109.58468 * 176.70263 * 26 17 16 45 45 H 1.08998 * 109.59066 * 320.91224 * 27 14 11 46 46 H 1.09007 * 109.58248 * 81.34159 * 27 14 11 47 47 H 1.09006 * 109.47188 * 262.68916 * 29 28 3 48 48 H 1.09005 * 109.47475 * 22.68099 * 29 28 3 49 49 H 1.08999 * 109.47660 * 142.68825 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2981 2.3809 -0.0005 5 7 1.8846 3.5622 0.0049 6 6 3.1953 3.6892 0.0056 7 6 4.0198 2.5636 0.0000 8 6 5.4911 2.7104 0.0014 9 8 6.2002 1.7241 0.0447 10 7 6.0459 3.9378 -0.0454 11 6 7.5037 4.0832 -0.0435 12 1 8.0686 3.1586 -0.1623 13 6 8.1044 5.1689 0.8523 14 6 8.0871 5.3515 -0.6651 15 6 7.1075 6.3754 -1.2470 16 6 7.8056 7.7388 -1.3222 17 7 9.0918 7.5749 -2.0113 18 6 9.3744 8.3068 -3.1337 19 1 8.5970 8.5109 -3.8552 20 6 10.6599 8.7862 -3.3441 21 7 10.9910 9.2903 -4.5141 22 14 11.9199 8.7163 -1.9669 23 1 12.6771 7.4417 -2.0530 24 1 12.8590 9.8594 -2.0965 25 1 11.2257 8.7920 -0.6564 26 6 10.0717 6.6174 -1.4828 27 6 9.4197 5.2313 -1.4110 28 6 3.4321 1.2937 -0.0061 29 6 4.2810 0.0486 -0.0123 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 0.2197 2.3226 -0.0005 34 1 3.6365 4.6749 0.0098 35 1 5.4800 4.7249 -0.0803 36 1 7.4150 5.7746 1.4405 37 1 9.0647 4.9585 1.3231 38 1 6.8047 6.0642 -2.2468 39 1 6.2307 6.4488 -0.6036 40 1 7.9766 8.1176 -0.3147 41 1 7.1806 8.4389 -1.8766 42 1 11.8893 9.6257 -4.6610 43 1 10.3832 6.9266 -0.4851 44 1 10.9383 6.5797 -2.1429 45 1 10.0770 4.5454 -0.8765 46 1 9.2415 4.8586 -2.4197 47 1 4.5983 -0.1799 1.0052 48 1 3.7005 -0.7851 -0.4075 49 1 5.1582 0.2099 -0.6388 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016689062.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:44 Heat of formation + Delta-G solvation = -4.959923 kcal Electronic energy + Delta-G solvation = -30136.516971 eV Core-core repulsion = 26064.766591 eV Total energy + Delta-G solvation = -4071.750380 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -42.16480 -41.00386 -39.88884 -38.91087 -37.32409 -34.89926 -34.61313 -33.71287 -32.04476 -31.65248 -30.18925 -28.88427 -28.49053 -26.02914 -25.40356 -24.46692 -23.69777 -23.04301 -22.44032 -21.70323 -19.92856 -19.48066 -18.56366 -18.41392 -17.61666 -17.39915 -17.17209 -17.01397 -16.88985 -16.09815 -15.91224 -15.53795 -15.43380 -15.20307 -15.09105 -14.67685 -14.54464 -14.35316 -14.06387 -13.93403 -13.86799 -13.80120 -13.77291 -13.42955 -13.15978 -12.91682 -12.73823 -12.61065 -12.44754 -12.36086 -12.21786 -12.11674 -11.56726 -11.47432 -11.36420 -11.22154 -10.76985 -10.70248 -10.64411 -10.45681 -9.69096 -9.54714 -8.69055 -8.15452 -5.59817 -0.55273 0.07151 1.32298 1.41807 1.52176 1.65203 1.78272 2.26016 2.43009 2.62435 2.94978 3.13656 3.23228 3.36504 3.39861 3.56737 3.60316 3.74532 3.83080 3.93278 3.96830 4.04566 4.07779 4.34813 4.39904 4.41069 4.52364 4.54521 4.59810 4.63208 4.71209 4.73429 4.77308 4.82373 4.88781 4.94924 4.96152 5.03392 5.04442 5.12790 5.15111 5.24735 5.33130 5.37763 5.49024 5.53792 5.96554 6.12223 6.18000 6.38590 6.70098 6.99548 7.05883 7.64386 8.08789 9.04183 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.024711 B = 0.002172 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.844736 B =12887.462920 C =13394.525988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.319 6.319 3 C 0.067 3.933 4 C 0.046 3.954 5 N -0.470 5.470 6 C 0.103 3.897 7 C -0.164 4.164 8 C 0.567 3.433 9 O -0.556 6.556 10 N -0.679 5.679 11 C 0.085 3.915 12 H 0.126 0.874 13 C -0.162 4.162 14 C -0.119 4.119 15 C -0.088 4.088 16 C 0.146 3.854 17 N -0.620 5.620 18 C -0.250 4.250 19 H 0.042 0.958 20 C -0.034 4.034 21 N -0.963 5.963 22 Si 0.956 3.044 23 H -0.275 1.275 24 H -0.312 1.312 25 H -0.253 1.253 26 C 0.127 3.873 27 C -0.092 4.092 28 C -0.031 4.031 29 C -0.107 4.107 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.123 0.877 33 H 0.193 0.807 34 H 0.182 0.818 35 H 0.412 0.588 36 H 0.114 0.886 37 H 0.109 0.891 38 H 0.052 0.948 39 H 0.090 0.910 40 H 0.039 0.961 41 H 0.054 0.946 42 H 0.261 0.739 43 H 0.039 0.961 44 H 0.043 0.957 45 H 0.081 0.919 46 H 0.050 0.950 47 H 0.077 0.923 48 H 0.075 0.925 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.879 -18.437 15.282 32.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.232 6.232 3 C 0.019 3.981 4 C -0.111 4.111 5 N -0.179 5.179 6 C -0.056 4.056 7 C -0.170 4.170 8 C 0.355 3.645 9 O -0.435 6.435 10 N -0.330 5.330 11 C -0.021 4.021 12 H 0.144 0.856 13 C -0.201 4.201 14 C -0.121 4.121 15 C -0.127 4.127 16 C 0.022 3.978 17 N -0.345 5.345 18 C -0.380 4.380 19 H 0.060 0.940 20 C -0.229 4.229 21 N -0.608 5.608 22 Si 0.785 3.215 23 H -0.202 1.202 24 H -0.241 1.241 25 H -0.177 1.177 26 C 0.002 3.998 27 C -0.131 4.131 28 C -0.040 4.040 29 C -0.163 4.163 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.141 0.859 33 H 0.209 0.791 34 H 0.199 0.801 35 H 0.251 0.749 36 H 0.132 0.868 37 H 0.127 0.873 38 H 0.071 0.929 39 H 0.108 0.892 40 H 0.057 0.943 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.057 0.943 44 H 0.062 0.938 45 H 0.099 0.901 46 H 0.069 0.931 47 H 0.095 0.905 48 H 0.094 0.906 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -21.746 -18.530 15.237 32.379 hybrid contribution 1.074 0.123 -0.246 1.109 sum -20.672 -18.407 14.991 31.478 Atomic orbital electron populations 1.23511 0.75561 1.06351 1.02870 1.86095 1.23964 1.24859 1.88251 1.19781 0.91886 0.86974 0.99480 1.23585 1.02166 0.86331 0.99050 1.67622 1.11934 1.26676 1.11680 1.23143 0.88725 0.98540 0.95198 1.20614 0.93778 0.94504 1.08072 1.18083 0.87213 0.83250 0.75937 1.90727 1.63779 1.38139 1.50894 1.45189 1.06605 1.07972 1.73194 1.21700 0.80540 0.94775 1.05038 0.85580 1.23689 1.03407 1.00761 0.92211 1.21784 0.97212 0.97403 0.95668 1.21478 0.96569 0.94368 1.00253 1.21074 0.85897 0.95420 0.95441 1.44355 1.16462 1.43966 1.29682 1.18779 0.95770 1.26312 0.97139 0.94000 1.26235 1.00504 0.97459 0.98686 1.69925 1.20412 1.46420 1.24068 0.85730 0.78494 0.76043 0.81252 1.20198 1.24135 1.17684 1.21345 0.92141 0.89652 0.96688 1.21538 0.94899 0.97077 0.99611 1.20019 0.91850 0.95912 0.96226 1.20815 0.98995 0.93006 1.03499 0.90916 0.91091 0.85878 0.79052 0.80082 0.74928 0.86782 0.87270 0.92939 0.89174 0.94256 0.92749 0.92992 0.94344 0.93836 0.90100 0.93118 0.90491 0.90586 0.89987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.06 9.82 113.37 1.11 1.17 16 2 O -0.32 -4.59 9.55 -92.66 -0.89 -5.48 16 3 C 0.07 1.15 6.68 22.56 0.15 1.30 16 4 C 0.05 0.69 10.21 84.83 0.87 1.55 16 5 N -0.47 -8.57 10.34 -194.39 -2.01 -10.58 16 6 C 0.10 1.80 10.71 85.03 0.91 2.71 16 7 C -0.16 -3.41 5.89 -20.01 -0.12 -3.52 16 8 C 0.57 13.39 7.75 86.79 0.67 14.07 16 9 O -0.56 -16.33 13.03 -3.88 -0.05 -16.38 16 10 N -0.68 -13.67 5.30 -445.63 -2.36 -16.03 16 11 C 0.09 1.96 6.14 44.94 0.28 2.24 16 12 H 0.13 3.24 7.40 -2.38 -0.02 3.22 16 13 C -0.16 -3.38 9.86 30.55 0.30 -3.08 16 14 C -0.12 -3.16 1.94 -52.17 -0.10 -3.26 16 15 C -0.09 -2.41 5.37 30.77 0.17 -2.25 16 16 C 0.15 5.26 6.51 86.43 0.56 5.82 16 17 N -0.62 -28.34 2.60 -698.91 -1.81 -30.15 16 18 C -0.25 -14.16 9.96 84.03 0.84 -13.33 16 19 H 0.04 2.64 8.06 -2.91 -0.02 2.62 16 20 C -0.03 -2.00 5.33 84.86 0.45 -1.55 16 21 N -0.96 -61.05 13.97 21.65 0.30 -60.75 16 22 Si 0.96 46.60 24.40 68.60 1.67 48.27 16 23 H -0.28 -12.75 6.74 99.48 0.67 -12.08 16 24 H -0.31 -15.54 7.11 99.48 0.71 -14.83 16 25 H -0.25 -11.54 6.45 99.48 0.64 -10.90 16 26 C 0.13 5.16 4.19 86.43 0.36 5.52 16 27 C -0.09 -2.99 5.83 30.78 0.18 -2.81 16 28 C -0.03 -0.65 5.97 -19.31 -0.12 -0.77 16 29 C -0.11 -2.25 8.71 71.23 0.62 -1.63 16 30 H 0.07 0.19 7.68 -2.38 -0.02 0.17 16 31 H 0.07 0.21 7.67 -2.39 -0.02 0.20 16 32 H 0.12 0.18 8.14 -2.39 -0.02 0.16 16 33 H 0.19 1.53 6.30 -2.91 -0.02 1.51 16 34 H 0.18 2.17 6.42 -2.92 -0.02 2.15 16 35 H 0.41 6.27 5.19 -92.71 -0.48 5.78 16 36 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.05 1.62 8.14 -2.39 -0.02 1.61 16 39 H 0.09 1.74 6.75 -2.39 -0.02 1.72 16 40 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.05 2.03 7.92 -2.39 -0.02 2.01 16 42 H 0.26 15.75 8.31 -92.71 -0.77 14.97 16 43 H 0.04 1.49 6.98 -2.39 -0.02 1.47 16 44 H 0.04 1.99 4.91 -2.39 -0.01 1.98 16 45 H 0.08 2.22 8.10 -2.39 -0.02 2.20 16 46 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 47 H 0.08 1.60 8.14 -2.38 -0.02 1.59 16 48 H 0.08 1.40 7.42 -2.38 -0.02 1.39 16 49 H 0.08 2.03 5.95 -2.39 -0.01 2.02 16 Total: -1.00 -75.15 382.40 2.39 -72.76 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: 0.40 Total: 16.15 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: 7.14 Total: 2.19 kcal Atomic # 7 Polarization: -111.63 SS G_CDS: -5.88 Total: -117.51 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -0.94 Total: -21.86 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 1.67 Total: 48.27 kcal Total: -75.15 2.39 -72.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016689062.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.799 kcal (2) G-P(sol) polarization free energy of solvation -75.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds