Wall clock time and date at job start Wed Apr 1 2020 04:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37996 * 120.82217 * 2 1 4 4 C 1.39127 * 119.26771 * 180.27049 * 3 2 1 5 5 O 1.35494 * 119.52705 * 179.69545 * 4 3 2 6 6 N 1.32439 * 120.94340 * 359.71893 * 4 3 2 7 7 C 1.31627 * 121.80481 * 359.97438 * 6 4 3 8 8 C 1.50698 * 119.68802 * 180.02562 * 7 6 4 9 9 C 1.39559 * 120.62829 * 0.02562 * 7 6 4 10 10 C 1.47620 * 120.50445 * 180.02562 * 9 7 6 11 11 O 1.21570 * 120.00146 * 89.99528 * 10 9 7 12 12 N 1.34781 * 119.99691 * 270.00053 * 10 9 7 13 13 C 1.46499 * 119.99611 * 179.97438 * 12 10 9 14 14 H 1.08997 * 115.56887 * 9.28931 * 13 12 10 15 15 C 1.53040 * 117.49670 * 223.58139 * 13 12 10 16 16 C 1.52822 * 117.49888 * 154.99881 * 13 12 10 17 17 C 1.53178 * 117.71571 * 359.85967 * 16 13 12 18 18 C 1.53354 * 108.76913 * 158.87857 * 17 16 13 19 19 N 1.46839 * 108.81141 * 51.30384 * 18 17 16 20 20 C 1.36943 * 120.37901 * 123.11274 * 19 18 17 21 21 H 1.07999 * 119.99950 * 331.22649 * 20 19 18 22 22 C 1.38811 * 120.00018 * 151.22549 * 20 19 18 23 23 N 1.31621 * 119.99864 * 342.28973 * 22 20 19 24 24 Si 1.86795 * 119.99850 * 162.29129 * 22 20 19 25 25 H 1.48495 * 109.47250 * 179.97438 * 24 22 20 26 26 H 1.48500 * 109.47165 * 299.99963 * 24 22 20 27 27 H 1.48504 * 109.47405 * 60.00149 * 24 22 20 28 28 C 1.46844 * 119.24249 * 303.37737 * 19 18 17 29 29 C 1.52871 * 109.07030 * 56.58865 * 28 19 18 30 30 H 1.09001 * 109.47195 * 270.27529 * 1 2 3 31 31 H 1.08990 * 109.47138 * 30.28259 * 1 2 3 32 32 H 1.09004 * 109.46413 * 150.27556 * 1 2 3 33 33 H 1.08004 * 120.36430 * 0.02562 * 3 2 1 34 34 H 0.96701 * 114.00184 * 270.02398 * 5 4 3 35 35 H 1.09006 * 109.47614 * 269.98323 * 8 7 6 36 36 H 1.09002 * 109.47188 * 29.98265 * 8 7 6 37 37 H 1.09001 * 109.47360 * 149.98163 * 8 7 6 38 38 H 0.97000 * 119.99862 * 359.97438 * 12 10 9 39 39 H 1.09003 * 117.50143 * 145.04778 * 15 13 12 40 40 H 1.08991 * 117.53174 * 359.97438 * 15 13 12 41 41 H 1.09003 * 109.59144 * 39.08914 * 17 16 13 42 42 H 1.09007 * 109.58622 * 278.65860 * 17 16 13 43 43 H 1.08997 * 109.57212 * 291.50879 * 18 17 16 44 44 H 1.08995 * 109.58051 * 171.10607 * 18 17 16 45 45 H 0.97000 * 119.99597 * 180.02562 * 23 22 20 46 46 H 1.09000 * 109.57737 * 176.41847 * 28 19 18 47 47 H 1.08990 * 109.58155 * 296.82534 * 28 19 18 48 48 H 1.09009 * 109.66214 * 189.04410 * 29 28 19 49 49 H 1.09001 * 109.45030 * 68.65491 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.1851 0.0000 4 6 3.6048 1.1473 -0.0057 5 8 4.3043 2.3077 -0.0120 6 7 4.2548 -0.0066 -0.0056 7 6 3.6205 -1.1600 0.0004 8 6 4.4081 -2.4448 0.0009 9 6 2.2257 -1.2044 0.0064 10 6 1.5172 -2.4994 0.0137 11 8 1.2299 -3.0292 1.0695 12 7 1.1889 -3.0945 -1.1502 13 6 0.4863 -4.3800 -1.1429 14 1 0.1257 -4.7135 -0.1699 15 6 0.9644 -5.4521 -2.1249 16 6 -0.3602 -4.7285 -2.3666 17 6 -0.4152 -3.7089 -3.5085 18 6 -0.8394 -4.4300 -4.7938 19 7 -2.0598 -5.2006 -4.5236 20 6 -3.1915 -4.9879 -5.2649 21 1 -3.3784 -4.0166 -5.6984 22 6 -4.0983 -6.0207 -5.4590 23 7 -3.7317 -7.2669 -5.2469 24 14 -5.8389 -5.6420 -6.0213 25 1 -6.6029 -6.9084 -6.1537 26 1 -6.5019 -4.7653 -5.0228 27 1 -5.7954 -4.9511 -7.3351 28 6 -2.0546 -6.1978 -3.4457 29 6 -1.6533 -5.5168 -2.1372 30 1 -0.3634 0.0049 1.0277 31 1 -0.3633 0.8874 -0.5182 32 1 -0.3632 -0.8925 -0.5096 33 1 1.6935 2.1314 0.0004 34 1 4.5033 2.6422 -0.8972 35 1 4.5935 -2.7579 -1.0267 36 1 5.3590 -2.2879 0.5100 37 1 3.8415 -3.2181 0.5196 38 1 1.4179 -2.6716 -1.9926 39 1 0.9180 -6.4909 -1.7978 40 1 1.8011 -5.2012 -2.7766 41 1 0.5695 -3.2626 -3.6478 42 1 -1.1407 -2.9313 -3.2694 43 1 -0.0449 -5.1042 -5.1134 44 1 -1.0359 -3.6969 -5.5761 45 1 -4.3653 -7.9887 -5.3829 46 1 -3.0508 -6.6277 -3.3411 47 1 -1.3377 -6.9847 -3.6795 48 1 -1.4901 -6.2704 -1.3666 49 1 -2.4454 -4.8366 -1.8242 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016982224.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:21 Heat of formation + Delta-G solvation = 0.221105 kcal Electronic energy + Delta-G solvation = -30476.399087 eV Core-core repulsion = 26404.873373 eV Total energy + Delta-G solvation = -4071.525714 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.29114 -39.83512 -38.53358 -37.42521 -35.53689 -34.68403 -33.28053 -32.09628 -31.49766 -30.07934 -28.48324 -28.41770 -27.95985 -24.43160 -24.31742 -22.52560 -22.16831 -21.68670 -21.05179 -20.48187 -18.83306 -18.35479 -17.91449 -17.56341 -16.59651 -16.34175 -16.00128 -15.06732 -14.75081 -14.58341 -14.52936 -14.16153 -14.07956 -13.67738 -13.62631 -13.55275 -13.39235 -13.19288 -13.12230 -12.76982 -12.64414 -12.45582 -12.30290 -12.25514 -11.99569 -11.71188 -11.65215 -11.38396 -11.01652 -10.75230 -10.49885 -10.42315 -10.37044 -9.99404 -9.93487 -9.80760 -9.73756 -9.65559 -9.41813 -9.17863 -8.56398 -8.47825 -6.67686 -5.82081 -3.25484 0.38110 0.74527 2.30735 2.79269 3.09647 3.25484 3.35692 3.42130 3.43047 4.05515 4.09836 4.13599 4.39680 4.46735 4.63824 4.80712 4.90688 4.94329 5.06069 5.07238 5.10123 5.18712 5.22426 5.26411 5.36006 5.43539 5.52246 5.58718 5.58842 5.73381 5.75994 5.81662 5.99293 6.01247 6.02799 6.04465 6.23824 6.37876 6.46361 6.56476 6.58880 6.66108 6.78324 6.91562 7.03065 7.31591 7.33940 7.47446 7.63714 7.76143 8.00130 8.43347 9.18620 9.82107 10.38447 11.25765 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018194 B = 0.002401 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.638910 B =11659.468549 C =12301.327670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.015 3.985 3 C -0.196 4.196 4 C 0.332 3.668 5 O -0.481 6.481 6 N -0.508 5.508 7 C 0.196 3.804 8 C -0.114 4.114 9 C -0.193 4.193 10 C 0.576 3.424 11 O -0.528 6.528 12 N -0.686 5.686 13 C 0.065 3.935 14 H 0.134 0.866 15 C -0.180 4.180 16 C -0.095 4.095 17 C -0.098 4.098 18 C 0.150 3.850 19 N -0.589 5.589 20 C -0.256 4.256 21 H 0.063 0.937 22 C 0.004 3.996 23 N -0.901 5.901 24 Si 0.901 3.099 25 H -0.290 1.290 26 H -0.284 1.284 27 H -0.283 1.283 28 C 0.173 3.827 29 C -0.105 4.105 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.147 0.853 34 H 0.403 0.597 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.402 0.598 39 H 0.100 0.900 40 H 0.092 0.908 41 H 0.044 0.956 42 H 0.064 0.936 43 H 0.019 0.981 44 H 0.054 0.946 45 H 0.255 0.745 46 H 0.090 0.910 47 H 0.018 0.982 48 H 0.052 0.948 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.054 14.143 8.675 21.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.007 3.993 3 C -0.217 4.217 4 C 0.154 3.846 5 O -0.288 6.288 6 N -0.227 5.227 7 C 0.057 3.943 8 C -0.171 4.171 9 C -0.198 4.198 10 C 0.360 3.640 11 O -0.404 6.404 12 N -0.335 5.335 13 C -0.040 4.040 14 H 0.152 0.848 15 C -0.219 4.219 16 C -0.096 4.096 17 C -0.137 4.137 18 C 0.023 3.977 19 N -0.311 5.311 20 C -0.385 4.385 21 H 0.081 0.919 22 C -0.195 4.195 23 N -0.545 5.545 24 Si 0.731 3.269 25 H -0.216 1.216 26 H -0.210 1.210 27 H -0.209 1.209 28 C 0.047 3.953 29 C -0.145 4.145 30 H 0.106 0.894 31 H 0.100 0.900 32 H 0.097 0.903 33 H 0.165 0.835 34 H 0.262 0.738 35 H 0.106 0.894 36 H 0.104 0.896 37 H 0.101 0.899 38 H 0.238 0.762 39 H 0.118 0.882 40 H 0.110 0.890 41 H 0.063 0.937 42 H 0.082 0.918 43 H 0.037 0.963 44 H 0.072 0.928 45 H 0.065 0.935 46 H 0.108 0.892 47 H 0.036 0.964 48 H 0.071 0.929 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 14.612 13.630 9.990 22.341 hybrid contribution -1.449 0.571 -1.159 1.941 sum 13.164 14.201 8.831 21.282 Atomic orbital electron populations 1.20977 0.89030 1.04287 1.03989 1.20250 0.97105 0.90795 0.91122 1.21894 0.93701 0.99428 1.06716 1.19252 0.87033 0.85033 0.93311 1.84728 1.76011 1.34031 1.34065 1.66994 1.41813 0.97819 1.16122 1.21037 0.89087 0.93208 0.90980 1.20891 1.00654 0.91668 1.03906 1.20703 0.94868 0.94326 1.09909 1.17809 0.78271 0.83699 0.84199 1.90821 1.53894 1.64863 1.30864 1.45469 1.57931 1.21894 1.08171 1.21983 1.00640 0.84113 0.97236 0.84850 1.23536 0.98445 0.97602 1.02269 1.21967 0.92955 0.99629 0.95061 1.21639 0.99132 0.96747 0.96197 1.20826 0.89697 0.94052 0.93077 1.43944 1.07794 1.43724 1.35630 1.19129 0.97252 0.94534 1.27605 0.91880 1.25045 0.99592 0.94917 0.99948 1.70023 1.33950 0.97886 1.52599 0.86394 0.84835 0.77030 0.78646 1.21624 1.21017 1.20898 1.20663 1.01548 0.89609 0.83502 1.21806 0.93803 0.98171 1.00696 0.89435 0.90003 0.90288 0.83496 0.73811 0.89444 0.89554 0.89917 0.76250 0.88186 0.88972 0.93697 0.91765 0.96301 0.92768 0.93541 0.89184 0.96376 0.92919 0.92124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.09 9.68 36.01 0.35 -0.74 16 2 C 0.02 0.15 5.95 -103.95 -0.62 -0.47 16 3 C -0.20 -1.72 9.73 -39.34 -0.38 -2.11 16 4 C 0.33 3.32 7.74 -16.96 -0.13 3.19 16 5 O -0.48 -3.89 13.55 -18.17 -0.25 -4.14 16 6 N -0.51 -5.86 10.28 -9.20 -0.09 -5.96 16 7 C 0.20 2.18 6.82 -82.19 -0.56 1.62 16 8 C -0.11 -1.06 9.78 36.00 0.35 -0.70 16 9 C -0.19 -2.19 5.65 -104.82 -0.59 -2.79 16 10 C 0.58 7.40 4.33 -12.43 -0.05 7.34 16 11 O -0.53 -8.67 16.67 5.30 0.09 -8.58 16 12 N -0.69 -8.00 5.34 -54.89 -0.29 -8.30 16 13 C 0.07 0.88 6.14 -68.00 -0.42 0.46 16 14 H 0.13 1.96 7.40 -51.93 -0.38 1.57 16 15 C -0.18 -2.41 9.87 -26.78 -0.26 -2.67 16 16 C -0.09 -1.45 1.94 -154.49 -0.30 -1.75 16 17 C -0.10 -1.51 5.37 -26.46 -0.14 -1.66 16 18 C 0.15 2.94 6.52 -3.67 -0.02 2.92 16 19 N -0.59 -14.07 2.94 -172.56 -0.51 -14.58 16 20 C -0.26 -6.79 9.54 -15.06 -0.14 -6.93 16 21 H 0.06 1.65 7.89 -52.49 -0.41 1.23 16 22 C 0.00 0.10 4.89 -17.43 -0.09 0.02 16 23 N -0.90 -25.53 11.23 55.49 0.62 -24.90 16 24 Si 0.90 21.20 29.59 -169.99 -5.03 16.17 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 27 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 28 C 0.17 3.93 5.37 -3.92 -0.02 3.91 16 29 C -0.11 -1.91 5.81 -26.71 -0.16 -2.06 16 30 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.08 0.53 8.10 -51.93 -0.42 0.11 16 32 H 0.08 0.78 7.19 -51.93 -0.37 0.41 16 33 H 0.15 0.92 8.06 -52.48 -0.42 0.50 16 34 H 0.40 1.15 9.06 45.56 0.41 1.56 16 35 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.08 0.84 7.06 -51.93 -0.37 0.47 16 38 H 0.40 4.06 7.10 -40.82 -0.29 3.77 16 39 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.04 0.56 6.75 -51.93 -0.35 0.21 16 42 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.05 1.04 7.92 -51.93 -0.41 0.63 16 45 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 46 H 0.09 2.33 5.94 -51.93 -0.31 2.02 16 47 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.05 0.86 8.10 -51.92 -0.42 0.44 16 49 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 LS Contribution 398.20 15.07 6.00 6.00 Total: -1.00 -32.85 398.20 -9.34 -42.19 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -6.69 Total: 4.51 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: -3.19 Total: -2.41 kcal Atomic # 7 Polarization: -53.46 SS G_CDS: -0.27 Total: -53.74 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: -0.16 Total: -12.72 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.17 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.85 -9.34 -42.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016982224.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.410 kcal (2) G-P(sol) polarization free energy of solvation -32.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds