Wall clock time and date at job start Wed Apr 1 2020 04:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37996 * 120.82217 * 2 1 4 4 C 1.39127 * 119.26771 * 180.27049 * 3 2 1 5 5 O 1.35494 * 119.52705 * 179.69545 * 4 3 2 6 6 N 1.32439 * 120.94340 * 359.71893 * 4 3 2 7 7 C 1.31627 * 121.80481 * 359.97438 * 6 4 3 8 8 C 1.50698 * 119.68802 * 180.02562 * 7 6 4 9 9 C 1.39559 * 120.62829 * 0.02562 * 7 6 4 10 10 C 1.47620 * 120.50445 * 180.02562 * 9 7 6 11 11 O 1.21570 * 120.00146 * 89.99528 * 10 9 7 12 12 N 1.34781 * 119.99691 * 270.00053 * 10 9 7 13 13 C 1.46499 * 119.99611 * 179.97438 * 12 10 9 14 14 H 1.08997 * 115.56887 * 9.28931 * 13 12 10 15 15 C 1.53040 * 117.49670 * 223.58139 * 13 12 10 16 16 C 1.52822 * 117.49888 * 154.99881 * 13 12 10 17 17 C 1.53178 * 117.71571 * 359.85967 * 16 13 12 18 18 C 1.53354 * 108.76913 * 158.87857 * 17 16 13 19 19 N 1.46839 * 108.81141 * 51.30384 * 18 17 16 20 20 C 1.36943 * 120.37901 * 123.11274 * 19 18 17 21 21 H 1.07999 * 119.99950 * 331.22649 * 20 19 18 22 22 C 1.38811 * 120.00018 * 151.22549 * 20 19 18 23 23 N 1.31621 * 119.99864 * 342.28973 * 22 20 19 24 24 Si 1.86795 * 119.99850 * 162.29129 * 22 20 19 25 25 H 1.48495 * 109.47250 * 179.97438 * 24 22 20 26 26 H 1.48500 * 109.47165 * 299.99963 * 24 22 20 27 27 H 1.48504 * 109.47405 * 60.00149 * 24 22 20 28 28 C 1.46844 * 119.24249 * 303.37737 * 19 18 17 29 29 C 1.52871 * 109.07030 * 56.58865 * 28 19 18 30 30 H 1.09001 * 109.47195 * 270.27529 * 1 2 3 31 31 H 1.08990 * 109.47138 * 30.28259 * 1 2 3 32 32 H 1.09004 * 109.46413 * 150.27556 * 1 2 3 33 33 H 1.08004 * 120.36430 * 0.02562 * 3 2 1 34 34 H 0.96701 * 114.00184 * 270.02398 * 5 4 3 35 35 H 1.09006 * 109.47614 * 269.98323 * 8 7 6 36 36 H 1.09002 * 109.47188 * 29.98265 * 8 7 6 37 37 H 1.09001 * 109.47360 * 149.98163 * 8 7 6 38 38 H 0.97000 * 119.99862 * 359.97438 * 12 10 9 39 39 H 1.09003 * 117.50143 * 145.04778 * 15 13 12 40 40 H 1.08991 * 117.53174 * 359.97438 * 15 13 12 41 41 H 1.09003 * 109.59144 * 39.08914 * 17 16 13 42 42 H 1.09007 * 109.58622 * 278.65860 * 17 16 13 43 43 H 1.08997 * 109.57212 * 291.50879 * 18 17 16 44 44 H 1.08995 * 109.58051 * 171.10607 * 18 17 16 45 45 H 0.97000 * 119.99597 * 180.02562 * 23 22 20 46 46 H 1.09000 * 109.57737 * 176.41847 * 28 19 18 47 47 H 1.08990 * 109.58155 * 296.82534 * 28 19 18 48 48 H 1.09009 * 109.66214 * 189.04410 * 29 28 19 49 49 H 1.09001 * 109.45030 * 68.65491 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.1851 0.0000 4 6 3.6048 1.1473 -0.0057 5 8 4.3043 2.3077 -0.0120 6 7 4.2548 -0.0066 -0.0056 7 6 3.6205 -1.1600 0.0004 8 6 4.4081 -2.4448 0.0009 9 6 2.2257 -1.2044 0.0064 10 6 1.5172 -2.4994 0.0137 11 8 1.2299 -3.0292 1.0695 12 7 1.1889 -3.0945 -1.1502 13 6 0.4863 -4.3800 -1.1429 14 1 0.1257 -4.7135 -0.1699 15 6 0.9644 -5.4521 -2.1249 16 6 -0.3602 -4.7285 -2.3666 17 6 -0.4152 -3.7089 -3.5085 18 6 -0.8394 -4.4300 -4.7938 19 7 -2.0598 -5.2006 -4.5236 20 6 -3.1915 -4.9879 -5.2649 21 1 -3.3784 -4.0166 -5.6984 22 6 -4.0983 -6.0207 -5.4590 23 7 -3.7317 -7.2669 -5.2469 24 14 -5.8389 -5.6420 -6.0213 25 1 -6.6029 -6.9084 -6.1537 26 1 -6.5019 -4.7653 -5.0228 27 1 -5.7954 -4.9511 -7.3351 28 6 -2.0546 -6.1978 -3.4457 29 6 -1.6533 -5.5168 -2.1372 30 1 -0.3634 0.0049 1.0277 31 1 -0.3633 0.8874 -0.5182 32 1 -0.3632 -0.8925 -0.5096 33 1 1.6935 2.1314 0.0004 34 1 4.5033 2.6422 -0.8972 35 1 4.5935 -2.7579 -1.0267 36 1 5.3590 -2.2879 0.5100 37 1 3.8415 -3.2181 0.5196 38 1 1.4179 -2.6716 -1.9926 39 1 0.9180 -6.4909 -1.7978 40 1 1.8011 -5.2012 -2.7766 41 1 0.5695 -3.2626 -3.6478 42 1 -1.1407 -2.9313 -3.2694 43 1 -0.0449 -5.1042 -5.1134 44 1 -1.0359 -3.6969 -5.5761 45 1 -4.3653 -7.9887 -5.3829 46 1 -3.0508 -6.6277 -3.3411 47 1 -1.3377 -6.9847 -3.6795 48 1 -1.4901 -6.2704 -1.3666 49 1 -2.4454 -4.8366 -1.8242 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016982224.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:20 Heat of formation + Delta-G solvation = -23.768986 kcal Electronic energy + Delta-G solvation = -30477.439375 eV Core-core repulsion = 26404.873373 eV Total energy + Delta-G solvation = -4072.566002 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -42.10313 -40.87958 -39.70857 -38.16445 -37.11504 -35.41250 -34.54516 -33.47071 -32.65421 -31.64567 -29.98370 -29.11159 -28.81122 -26.22600 -25.18509 -24.04480 -23.24523 -22.54086 -22.37796 -21.61222 -19.81618 -19.49923 -18.99617 -18.30636 -18.19551 -17.49226 -16.83846 -16.69491 -15.98970 -15.66814 -15.56089 -15.28972 -15.23093 -15.01768 -14.85020 -14.65664 -14.34318 -14.26123 -14.14726 -13.88527 -13.78838 -13.38759 -13.28417 -13.13993 -13.09112 -12.94058 -12.86795 -12.64591 -12.55220 -12.54734 -12.27682 -12.02285 -11.76905 -11.44296 -11.37205 -11.22014 -10.75569 -10.64904 -10.54705 -10.45264 -9.92190 -9.72804 -8.60488 -7.84851 -5.30726 -0.36054 0.02000 1.31262 1.47408 1.49913 1.56261 1.89552 2.33857 2.52721 2.55214 2.93785 3.30122 3.36250 3.40423 3.54100 3.65753 3.81261 3.87824 3.93930 4.00283 4.13868 4.16296 4.25584 4.38987 4.50936 4.54393 4.58052 4.61393 4.62348 4.75254 4.80717 4.86380 4.90821 4.95495 4.96233 5.04349 5.07820 5.09482 5.10986 5.17842 5.32941 5.38517 5.40110 5.44166 5.57068 5.67392 5.79976 6.36617 6.42777 6.53909 6.77943 7.03423 7.18272 7.91023 8.41411 9.20153 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018194 B = 0.002401 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.638910 B =11659.468549 C =12301.327670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.013 3.987 3 C -0.189 4.189 4 C 0.330 3.670 5 O -0.487 6.487 6 N -0.529 5.529 7 C 0.189 3.811 8 C -0.112 4.112 9 C -0.210 4.210 10 C 0.585 3.415 11 O -0.568 6.568 12 N -0.674 5.674 13 C 0.085 3.915 14 H 0.123 0.877 15 C -0.167 4.167 16 C -0.113 4.113 17 C -0.083 4.083 18 C 0.145 3.855 19 N -0.608 5.608 20 C -0.262 4.262 21 H 0.065 0.935 22 C -0.050 4.050 23 N -0.933 5.933 24 Si 0.963 3.037 25 H -0.296 1.296 26 H -0.279 1.279 27 H -0.275 1.275 28 C 0.181 3.819 29 C -0.093 4.093 30 H 0.086 0.914 31 H 0.107 0.893 32 H 0.064 0.936 33 H 0.175 0.825 34 H 0.425 0.575 35 H 0.104 0.896 36 H 0.090 0.910 37 H 0.071 0.929 38 H 0.413 0.587 39 H 0.102 0.898 40 H 0.111 0.889 41 H 0.083 0.917 42 H 0.058 0.942 43 H 0.017 0.983 44 H 0.054 0.946 45 H 0.249 0.751 46 H 0.052 0.948 47 H -0.001 1.001 48 H 0.067 0.933 49 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.272 16.578 8.719 24.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.005 3.995 3 C -0.210 4.210 4 C 0.152 3.848 5 O -0.298 6.298 6 N -0.250 5.250 7 C 0.050 3.950 8 C -0.169 4.169 9 C -0.215 4.215 10 C 0.371 3.629 11 O -0.446 6.446 12 N -0.323 5.323 13 C -0.021 4.021 14 H 0.141 0.859 15 C -0.205 4.205 16 C -0.114 4.114 17 C -0.122 4.122 18 C 0.020 3.980 19 N -0.331 5.331 20 C -0.393 4.393 21 H 0.083 0.917 22 C -0.245 4.245 23 N -0.579 5.579 24 Si 0.791 3.209 25 H -0.222 1.222 26 H -0.206 1.206 27 H -0.201 1.201 28 C 0.055 3.945 29 C -0.133 4.133 30 H 0.104 0.896 31 H 0.125 0.875 32 H 0.083 0.917 33 H 0.193 0.807 34 H 0.288 0.712 35 H 0.122 0.878 36 H 0.109 0.891 37 H 0.089 0.911 38 H 0.250 0.750 39 H 0.120 0.880 40 H 0.129 0.871 41 H 0.101 0.899 42 H 0.077 0.923 43 H 0.035 0.965 44 H 0.072 0.928 45 H 0.058 0.942 46 H 0.071 0.929 47 H 0.017 0.983 48 H 0.085 0.915 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 15.864 16.117 9.999 24.727 hybrid contribution -1.748 -0.104 -1.186 2.115 sum 14.117 16.014 8.813 23.095 Atomic orbital electron populations 1.21007 0.88243 1.04819 1.04078 1.20449 0.97716 0.90704 0.90661 1.22117 0.93261 1.00109 1.05529 1.19494 0.87694 0.85121 0.92491 1.84682 1.75825 1.33186 1.36129 1.67024 1.42419 0.98379 1.17191 1.21228 0.89155 0.93722 0.90880 1.20906 1.00408 0.90722 1.04849 1.20620 0.95071 0.93931 1.11872 1.17969 0.77458 0.83841 0.83609 1.90803 1.55577 1.65996 1.32271 1.45337 1.57205 1.21190 1.08553 1.21697 0.99555 0.84907 0.95927 0.85921 1.23625 0.97373 0.97719 1.01785 1.21796 0.92555 1.00581 0.96502 1.21449 1.00878 0.96077 0.93764 1.20993 0.87922 0.93730 0.95369 1.44207 1.08754 1.44249 1.35868 1.19465 0.98349 0.94473 1.26988 0.91727 1.25763 1.02992 0.94812 1.00955 1.70174 1.34744 0.98586 1.54386 0.85416 0.80577 0.76466 0.78450 1.22206 1.20566 1.20074 1.20423 0.98946 0.89524 0.85639 1.21547 0.95183 0.98311 0.98234 0.89560 0.87478 0.91707 0.80740 0.71214 0.87781 0.89126 0.91051 0.74958 0.87984 0.87055 0.89901 0.92307 0.96492 0.92787 0.94170 0.92940 0.98315 0.91459 0.93294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.89 9.68 71.24 0.69 -1.20 16 2 C 0.01 0.22 5.95 -19.43 -0.12 0.11 16 3 C -0.19 -2.78 9.73 22.43 0.22 -2.56 16 4 C 0.33 5.81 7.74 84.81 0.66 6.47 16 5 O -0.49 -6.60 13.55 -87.95 -1.19 -7.79 16 6 N -0.53 -11.28 10.28 -295.90 -3.04 -14.33 16 7 C 0.19 3.92 6.82 42.91 0.29 4.21 16 8 C -0.11 -1.91 9.78 71.24 0.70 -1.22 16 9 C -0.21 -4.44 5.65 -19.99 -0.11 -4.55 16 10 C 0.59 14.25 4.33 86.72 0.38 14.63 16 11 O -0.57 -18.33 16.67 -3.94 -0.07 -18.39 16 12 N -0.67 -14.25 5.34 -445.85 -2.38 -16.63 16 13 C 0.08 2.12 6.14 44.95 0.28 2.40 16 14 H 0.12 3.46 7.40 -2.39 -0.02 3.44 16 15 C -0.17 -4.06 9.87 30.56 0.30 -3.75 16 16 C -0.11 -3.29 1.94 -52.17 -0.10 -3.39 16 17 C -0.08 -2.38 5.37 30.77 0.17 -2.22 16 18 C 0.15 5.55 6.52 86.43 0.56 6.12 16 19 N -0.61 -29.38 2.94 -699.85 -2.06 -31.44 16 20 C -0.26 -14.10 9.54 84.03 0.80 -13.30 16 21 H 0.07 3.37 7.89 -2.91 -0.02 3.35 16 22 C -0.05 -2.74 4.89 84.86 0.41 -2.32 16 23 N -0.93 -54.61 11.23 21.65 0.24 -54.37 16 24 Si 0.96 44.26 29.59 68.60 2.03 46.29 16 25 H -0.30 -13.74 7.11 99.48 0.71 -13.04 16 26 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 27 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 28 C 0.18 8.45 5.37 86.27 0.46 8.92 16 29 C -0.09 -3.39 5.81 30.61 0.18 -3.21 16 30 H 0.09 1.33 8.14 -2.39 -0.02 1.32 16 31 H 0.11 1.04 8.10 -2.39 -0.02 1.02 16 32 H 0.06 1.17 7.19 -2.38 -0.02 1.15 16 33 H 0.18 1.51 8.06 -2.91 -0.02 1.49 16 34 H 0.43 1.22 9.06 -74.06 -0.67 0.55 16 35 H 0.10 1.38 8.14 -2.38 -0.02 1.36 16 36 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.07 1.38 7.06 -2.39 -0.02 1.37 16 38 H 0.41 7.03 7.10 -92.71 -0.66 6.37 16 39 H 0.10 2.49 8.14 -2.39 -0.02 2.48 16 40 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 41 H 0.08 1.77 6.75 -2.39 -0.02 1.75 16 42 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 43 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.05 2.03 7.92 -2.39 -0.02 2.01 16 45 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 46 H 0.05 2.84 5.94 -2.39 -0.01 2.82 16 47 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 48 H 0.07 2.20 8.10 -2.38 -0.02 2.18 16 49 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -72.85 398.20 -1.05 -73.90 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: -0.34 Total: 17.63 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: 5.76 Total: 5.13 kcal Atomic # 7 Polarization: -109.53 SS G_CDS: -7.24 Total: -116.77 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: -1.26 Total: -26.18 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -72.85 -1.05 -73.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016982224.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.130 kcal (2) G-P(sol) polarization free energy of solvation -72.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds