Wall clock time and date at job start Wed Apr 1 2020 03:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37997 * 120.81753 * 2 1 4 4 C 1.39126 * 119.26355 * 179.97438 * 3 2 1 5 5 O 1.35502 * 119.52346 * 180.02562 * 4 3 2 6 6 N 1.32435 * 120.95214 * 359.97438 * 4 3 2 7 7 C 1.31642 * 121.79560 * 0.02562 * 6 4 3 8 8 C 1.39559 * 120.62907 * 359.97438 * 7 6 4 9 9 C 1.47619 * 120.49980 * 180.02562 * 8 7 6 10 10 O 1.21585 * 119.99863 * 124.82759 * 9 8 7 11 11 N 1.34775 * 119.99780 * 304.82658 * 9 8 7 12 12 C 1.46946 * 120.84420 * 4.67474 * 11 9 8 13 13 C 1.52668 * 109.28070 * 233.95840 * 12 11 9 14 14 C 1.53122 * 109.55298 * 306.17032 * 13 12 11 15 15 C 1.52853 * 109.33958 * 60.51463 * 14 13 12 16 16 H 1.08998 * 108.58812 * 57.11552 * 15 14 13 17 17 C 1.52774 * 110.21272 * 176.75177 * 15 14 13 18 18 N 1.46890 * 109.19299 * 67.37243 * 17 15 14 19 19 C 1.36938 * 120.76916 * 233.31061 * 18 17 15 20 20 H 1.07998 * 120.00530 * 139.67329 * 19 18 17 21 21 C 1.38818 * 119.99702 * 319.67135 * 19 18 17 22 22 N 1.31618 * 119.99803 * 174.58435 * 21 19 18 23 23 Si 1.86800 * 120.00197 * 354.58033 * 21 19 18 24 24 H 1.48493 * 109.47047 * 87.17393 * 23 21 19 25 25 H 1.48500 * 109.47284 * 207.17533 * 23 21 19 26 26 H 1.48496 * 109.46863 * 327.17465 * 23 21 19 27 27 C 1.46961 * 118.46001 * 53.33004 * 18 17 15 28 28 C 1.53103 * 108.62237 * 305.68953 * 27 18 17 29 29 C 1.47305 * 120.84132 * 184.95110 * 11 9 8 30 30 H 1.09005 * 110.07293 * 4.20856 * 29 11 9 31 31 H 1.09000 * 109.46947 * 85.31713 * 1 2 3 32 32 H 1.09006 * 109.46689 * 205.31167 * 1 2 3 33 33 H 1.08994 * 109.47584 * 325.31131 * 1 2 3 34 34 H 1.07996 * 120.36771 * 359.95910 * 3 2 1 35 35 H 0.96697 * 113.99795 * 269.98158 * 5 4 3 36 36 H 1.07997 * 119.68360 * 179.97438 * 7 6 4 37 37 H 1.08997 * 109.54719 * 353.87618 * 12 11 9 38 38 H 1.08999 * 109.54277 * 114.14730 * 12 11 9 39 39 H 1.09008 * 109.54246 * 186.07984 * 13 12 11 40 40 H 1.08997 * 109.31865 * 66.12818 * 13 12 11 41 41 H 1.08998 * 109.49123 * 300.55757 * 14 13 12 42 42 H 1.08998 * 109.49335 * 180.47744 * 14 13 12 43 43 H 1.09002 * 109.51643 * 307.45956 * 17 15 14 44 44 H 1.08994 * 109.56411 * 187.31789 * 17 15 14 45 45 H 0.96997 * 119.99984 * 179.97438 * 22 21 19 46 46 H 1.09000 * 109.61665 * 185.94850 * 27 18 17 47 47 H 1.08999 * 109.75710 * 65.51609 * 27 18 17 48 48 H 1.09000 * 109.44963 * 295.32174 * 28 27 18 49 49 H 1.08996 * 109.45673 * 175.38089 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1851 0.0000 4 6 3.6047 1.1474 0.0005 5 8 4.3042 2.3079 0.0011 6 7 4.2548 -0.0064 0.0016 7 6 3.6205 -1.1599 0.0016 8 6 2.2256 -1.2043 0.0011 9 6 1.5172 -2.4995 0.0017 10 8 0.6976 -2.7436 0.8659 11 7 1.7791 -3.4112 -0.9557 12 6 2.8372 -3.1785 -1.9484 13 6 2.2546 -3.3308 -3.3513 14 6 1.5584 -4.6892 -3.4724 15 6 0.4255 -4.7703 -2.4495 16 1 -0.2574 -3.9381 -2.6206 17 6 -0.3346 -6.0861 -2.6070 18 7 0.5428 -7.1997 -2.2226 19 6 0.7480 -8.2549 -3.0708 20 1 1.7338 -8.6848 -3.1695 21 6 -0.3113 -8.7722 -3.8039 22 7 -0.0953 -9.7145 -4.6971 23 14 -2.0431 -8.1311 -3.5227 24 1 -2.2760 -6.9418 -4.3808 25 1 -3.0252 -9.1903 -3.8675 26 1 -2.2048 -7.7516 -2.0962 27 6 1.1951 -7.1552 -0.9064 28 6 1.9612 -5.8352 -0.7848 29 6 1.0077 -4.6635 -1.0372 30 1 0.2119 -4.6618 -0.2923 31 1 -0.3633 0.0839 -1.0242 32 1 -0.3633 -0.9291 0.4394 33 1 -0.3634 0.8449 0.5848 34 1 1.6935 2.1314 -0.0007 35 1 4.5078 2.6448 -0.8822 36 1 4.1849 -2.0807 0.0020 37 1 3.2352 -2.1710 -1.8279 38 1 3.6359 -3.9068 -1.8075 39 1 3.0557 -3.2662 -4.0878 40 1 1.5318 -2.5348 -3.5299 41 1 2.2783 -5.4851 -3.2817 42 1 1.1502 -4.8004 -4.4769 43 1 -0.6424 -6.2068 -3.6457 44 1 -1.2153 -6.0780 -1.9648 45 1 -0.8355 -10.0762 -5.2091 46 1 1.8888 -7.9908 -0.8134 47 1 0.4426 -7.2153 -0.1201 48 1 2.7657 -5.8135 -1.5199 49 1 2.3827 -5.7511 0.2169 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021669855.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:40:41 Heat of formation + Delta-G solvation = -10.929287 kcal Electronic energy + Delta-G solvation = -31849.148243 eV Core-core repulsion = 27777.139012 eV Total energy + Delta-G solvation = -4072.009231 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 21.53 seconds Orbital eigenvalues (eV) -41.37836 -40.18425 -38.45594 -37.29445 -35.88264 -34.22788 -32.94435 -32.64290 -31.20956 -30.37452 -29.96390 -28.32830 -25.83931 -25.44398 -24.10185 -23.00866 -22.48972 -22.29013 -21.39550 -20.00293 -18.78296 -18.11214 -17.87032 -17.22441 -16.80922 -16.38421 -16.06171 -15.43601 -15.02910 -14.87587 -14.63833 -14.39607 -14.12017 -13.95114 -13.88900 -13.47728 -13.27402 -13.11405 -13.03271 -12.82944 -12.67868 -12.47829 -12.45565 -12.36854 -12.09721 -11.89916 -11.75228 -11.08913 -10.90346 -10.66463 -10.63747 -10.49745 -10.27628 -10.15679 -9.95773 -9.90626 -9.71645 -9.60626 -9.53814 -9.25835 -8.66556 -8.50727 -6.81224 -5.98411 -3.51468 0.32568 0.75023 2.45637 2.79852 3.12897 3.27693 3.31560 3.44045 3.46265 4.12529 4.21493 4.29136 4.47924 4.61110 4.74353 4.81605 4.94432 4.99928 5.00718 5.07834 5.16238 5.23334 5.27608 5.32342 5.34098 5.38073 5.48314 5.53922 5.64311 5.68087 5.81970 5.89686 5.92807 5.97837 6.02313 6.09403 6.15510 6.23246 6.27595 6.34966 6.55322 6.61083 6.63481 6.66573 6.75394 6.90559 7.01828 7.36305 7.43642 8.03044 8.05371 8.34416 8.90811 9.66291 10.10191 11.16850 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.022807 B = 0.002940 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.417665 B = 9521.818521 C = 9771.037026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.022 3.978 3 C -0.192 4.192 4 C 0.326 3.674 5 O -0.481 6.481 6 N -0.507 5.507 7 C 0.160 3.840 8 C -0.187 4.187 9 C 0.567 3.433 10 O -0.532 6.532 11 N -0.595 5.595 12 C 0.100 3.900 13 C -0.133 4.133 14 C -0.107 4.107 15 C -0.108 4.108 16 H 0.060 0.940 17 C 0.130 3.870 18 N -0.604 5.604 19 C -0.262 4.262 20 H 0.081 0.919 21 C 0.031 3.969 22 N -0.913 5.913 23 Si 0.892 3.108 24 H -0.287 1.287 25 H -0.304 1.304 26 H -0.267 1.267 27 C 0.151 3.849 28 C -0.144 4.144 29 C 0.155 3.845 30 H 0.098 0.902 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.078 0.922 34 H 0.146 0.854 35 H 0.403 0.597 36 H 0.167 0.833 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.059 0.941 41 H 0.082 0.918 42 H 0.064 0.936 43 H 0.073 0.927 44 H 0.028 0.972 45 H 0.263 0.737 46 H 0.067 0.933 47 H 0.025 0.975 48 H 0.069 0.931 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.815 22.302 5.445 23.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.013 3.987 3 C -0.213 4.213 4 C 0.149 3.851 5 O -0.289 6.289 6 N -0.226 5.226 7 C 0.002 3.998 8 C -0.192 4.192 9 C 0.353 3.647 10 O -0.410 6.410 11 N -0.326 5.326 12 C -0.023 4.023 13 C -0.172 4.172 14 C -0.145 4.145 15 C -0.129 4.129 16 H 0.078 0.922 17 C 0.004 3.996 18 N -0.328 5.328 19 C -0.391 4.391 20 H 0.099 0.901 21 C -0.168 4.168 22 N -0.555 5.555 23 Si 0.723 3.277 24 H -0.214 1.214 25 H -0.232 1.232 26 H -0.192 1.192 27 C 0.024 3.976 28 C -0.183 4.183 29 C 0.053 3.947 30 H 0.116 0.884 31 H 0.099 0.901 32 H 0.114 0.886 33 H 0.096 0.904 34 H 0.164 0.836 35 H 0.262 0.738 36 H 0.184 0.816 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.078 0.922 41 H 0.100 0.900 42 H 0.083 0.917 43 H 0.091 0.909 44 H 0.046 0.954 45 H 0.073 0.927 46 H 0.086 0.914 47 H 0.043 0.957 48 H 0.088 0.912 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.187 22.061 6.373 23.782 hybrid contribution -1.654 0.570 -0.582 1.844 sum 4.532 22.631 5.791 23.796 Atomic orbital electron populations 1.21101 0.89189 1.05515 1.03384 1.20216 0.97304 0.90646 0.90487 1.21930 0.93756 0.99458 1.06129 1.19317 0.87066 0.85227 0.93535 1.84733 1.75946 1.34073 1.34107 1.67192 1.41864 0.98180 1.15334 1.22736 0.89996 0.95334 0.91729 1.20929 0.95477 0.94692 1.08141 1.17932 0.82170 0.82901 0.81667 1.90783 1.35045 1.78574 1.36614 1.48474 1.35897 1.19349 1.28910 1.21837 0.90128 1.01665 0.88672 1.21866 1.00553 0.99196 0.95542 1.21479 0.98106 0.95879 0.99005 1.21826 0.97671 0.99564 0.93827 0.92193 1.21365 0.92511 0.86139 0.99622 1.44246 1.54833 1.19682 1.14020 1.18806 0.94920 1.06982 1.18383 0.90135 1.25570 0.97834 0.95458 0.97984 1.69741 1.31853 1.28670 1.25258 0.86819 0.85162 0.76883 0.78817 1.21437 1.23207 1.19154 1.20909 0.94976 0.94208 0.87462 1.22425 0.99034 0.96098 1.00778 1.21387 0.94073 0.81247 0.97946 0.88423 0.90054 0.88638 0.90360 0.83579 0.73849 0.81568 0.90327 0.90614 0.90846 0.92209 0.89977 0.91732 0.90868 0.95373 0.92682 0.91401 0.95733 0.91200 0.92482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.75 36.01 0.35 -0.90 16 2 C 0.02 0.22 5.95 -103.96 -0.62 -0.40 16 3 C -0.19 -1.67 9.74 -39.34 -0.38 -2.05 16 4 C 0.33 3.18 7.74 -16.96 -0.13 3.05 16 5 O -0.48 -3.82 13.55 -18.20 -0.25 -4.06 16 6 N -0.51 -5.64 10.37 -12.96 -0.13 -5.78 16 7 C 0.16 1.69 8.62 -17.14 -0.15 1.54 16 8 C -0.19 -2.15 4.89 -104.82 -0.51 -2.66 16 9 C 0.57 7.81 6.59 -12.43 -0.08 7.73 16 10 O -0.53 -9.03 14.72 5.29 0.08 -8.96 16 11 N -0.59 -7.80 2.66 -166.36 -0.44 -8.25 16 12 C 0.10 1.07 5.08 -3.97 -0.02 1.05 16 13 C -0.13 -1.52 6.06 -26.84 -0.16 -1.68 16 14 C -0.11 -1.62 4.86 -26.74 -0.13 -1.75 16 15 C -0.11 -1.77 2.45 -90.74 -0.22 -1.99 16 16 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 17 C 0.13 2.65 3.56 -3.95 -0.01 2.64 16 18 N -0.60 -13.42 2.30 -172.63 -0.40 -13.82 16 19 C -0.26 -6.96 10.01 -15.06 -0.15 -7.11 16 20 H 0.08 2.31 8.06 -52.49 -0.42 1.89 16 21 C 0.03 0.88 5.41 -17.43 -0.09 0.78 16 22 N -0.91 -27.29 13.97 55.49 0.78 -26.51 16 23 Si 0.89 21.97 24.36 -169.99 -4.14 17.83 16 24 H -0.29 -6.79 6.69 56.52 0.38 -6.41 16 25 H -0.30 -7.68 7.11 56.52 0.40 -7.28 16 26 H -0.27 -6.44 6.25 56.52 0.35 -6.09 16 27 C 0.15 2.85 6.51 -3.74 -0.02 2.82 16 28 C -0.14 -2.24 5.03 -26.59 -0.13 -2.37 16 29 C 0.15 2.41 2.65 -67.34 -0.18 2.23 16 30 H 0.10 1.69 7.08 -51.93 -0.37 1.32 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.09 1.13 5.75 -51.93 -0.30 0.83 16 33 H 0.08 0.57 8.13 -51.93 -0.42 0.14 16 34 H 0.15 0.91 8.06 -52.49 -0.42 0.49 16 35 H 0.40 1.08 9.06 45.56 0.41 1.50 16 36 H 0.17 1.48 7.43 -52.49 -0.39 1.09 16 37 H 0.08 0.73 4.75 -51.93 -0.25 0.48 16 38 H 0.08 0.77 7.27 -51.93 -0.38 0.39 16 39 H 0.07 0.73 8.14 -51.92 -0.42 0.30 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.08 1.38 6.15 -51.93 -0.32 1.06 16 42 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.07 1.63 5.12 -51.93 -0.27 1.36 16 44 H 0.03 0.59 6.60 -51.93 -0.34 0.25 16 45 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 46 H 0.07 1.28 7.94 -51.93 -0.41 0.87 16 47 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 48 H 0.07 1.08 5.34 -51.93 -0.28 0.80 16 49 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 368.90 15.07 5.56 5.56 Total: -1.00 -32.90 368.90 -7.92 -40.82 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -6.32 Total: 2.23 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: -2.65 Total: 0.94 kcal Atomic # 7 Polarization: -54.16 SS G_CDS: -0.20 Total: -54.36 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: -0.17 Total: -13.02 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.14 Total: 17.83 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.90 -7.92 -40.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021669855.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.888 kcal (2) G-P(sol) polarization free energy of solvation -32.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 21.53 seconds