Wall clock time and date at job start Wed Apr 1 2020 03:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38005 * 120.82097 * 2 1 4 4 C 1.39119 * 119.26636 * 179.97438 * 3 2 1 5 5 O 1.35501 * 119.52758 * 179.97438 * 4 3 2 6 6 N 1.32439 * 120.94986 * 0.02562 * 4 3 2 7 7 C 1.31641 * 121.79803 * 359.97438 * 6 4 3 8 8 C 1.39561 * 120.62513 * 359.74099 * 7 6 4 9 9 C 1.47616 * 120.49912 * 180.26049 * 8 7 6 10 10 O 1.21588 * 120.00263 * 228.89844 * 9 8 7 11 11 N 1.34778 * 120.00006 * 48.89902 * 9 8 7 12 12 C 1.46942 * 120.84668 * 5.13946 * 11 9 8 13 13 C 1.53613 * 108.77268 * 125.92996 * 12 11 9 14 14 C 1.53121 * 109.40361 * 54.30947 * 13 12 11 15 15 C 1.52856 * 109.34299 * 299.21534 * 14 13 12 16 16 H 1.09001 * 109.25508 * 302.49926 * 15 14 13 17 17 C 1.52777 * 109.56795 * 182.83645 * 15 14 13 18 18 N 1.46895 * 109.18519 * 293.09034 * 17 15 14 19 19 C 1.36934 * 120.77512 * 126.62602 * 18 17 15 20 20 H 1.07998 * 120.00056 * 208.11430 * 19 18 17 21 21 C 1.38812 * 120.00227 * 28.12168 * 19 18 17 22 22 N 1.31619 * 119.99951 * 19.75151 * 21 19 18 23 23 Si 1.86796 * 119.99981 * 199.75696 * 21 19 18 24 24 H 1.48502 * 109.47439 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47197 * 119.99970 * 23 21 19 26 26 H 1.48499 * 109.46907 * 239.99763 * 23 21 19 27 27 C 1.46976 * 118.44640 * 306.64357 * 18 17 15 28 28 C 1.51553 * 109.37698 * 53.47289 * 27 18 17 29 29 C 1.47308 * 120.84513 * 185.42018 * 11 9 8 30 30 H 1.09001 * 110.07975 * 355.09224 * 29 11 9 31 31 H 1.08998 * 109.47373 * 92.16623 * 1 2 3 32 32 H 1.09007 * 109.47149 * 332.16843 * 1 2 3 33 33 H 1.08994 * 109.47308 * 212.16720 * 1 2 3 34 34 H 1.08004 * 120.36263 * 359.95835 * 3 2 1 35 35 H 0.96704 * 113.99508 * 90.00092 * 5 4 3 36 36 H 1.08004 * 119.68271 * 179.97438 * 7 6 4 37 37 H 1.09003 * 109.54785 * 245.84444 * 12 11 9 38 38 H 1.09000 * 109.54376 * 6.11421 * 12 11 9 39 39 H 1.09000 * 109.61609 * 294.26581 * 13 12 11 40 40 H 1.08991 * 109.39456 * 174.21845 * 13 12 11 41 41 H 1.08997 * 109.49278 * 179.25717 * 14 13 12 42 42 H 1.09000 * 109.49374 * 59.17624 * 14 13 12 43 43 H 1.09004 * 109.51335 * 52.99499 * 17 15 14 44 44 H 1.09000 * 109.52056 * 173.11475 * 17 15 14 45 45 H 0.97002 * 119.99936 * 180.02562 * 22 21 19 46 46 H 1.09003 * 109.61124 * 174.06010 * 27 18 17 47 47 H 1.09005 * 109.61255 * 294.39676 * 27 18 17 48 48 H 1.09003 * 110.30671 * 185.36460 * 28 27 18 49 49 H 1.09007 * 107.76404 * 65.95315 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1851 0.0000 4 6 3.6047 1.1474 0.0005 5 8 4.3043 2.3079 0.0000 6 7 4.2548 -0.0065 0.0005 7 6 3.6205 -1.1600 0.0005 8 6 2.2256 -1.2043 0.0060 9 6 1.5171 -2.4993 0.0117 10 8 0.6150 -2.7024 -0.7778 11 7 1.8702 -3.4567 0.8922 12 6 2.8796 -3.1933 1.9272 13 6 2.2825 -3.5397 3.2995 14 6 1.7574 -4.9779 3.2774 15 6 0.6647 -5.1017 2.2157 16 1 -0.1291 -4.3866 2.4318 17 6 0.0880 -6.5163 2.2375 18 7 1.1181 -7.4644 1.7930 19 6 1.4470 -8.5513 2.5582 20 1 2.4403 -8.9715 2.5010 21 6 0.5037 -9.1133 3.4075 22 7 -0.7774 -8.8815 3.2136 23 14 1.0523 -10.1985 4.8255 24 1 2.5338 -10.3016 4.8255 25 1 0.5970 -9.6046 6.1082 26 1 0.4623 -11.5523 4.6697 27 6 1.7879 -7.2190 0.5080 28 6 2.3518 -5.8123 0.4955 29 6 1.2586 -4.7957 0.8377 30 1 0.4758 -4.8190 0.0795 31 1 -0.3634 -0.0388 -1.0269 32 1 -0.3634 0.9088 0.4798 33 1 -0.3633 -0.8699 0.5471 34 1 1.6935 2.1314 -0.0007 35 1 4.5070 2.6453 0.8833 36 1 4.1849 -2.0808 0.0001 37 1 3.7599 -3.8091 1.7431 38 1 3.1586 -2.1399 1.9046 39 1 1.4631 -2.8572 3.5249 40 1 3.0539 -3.4464 4.0638 41 1 1.3454 -5.2297 4.2545 42 1 2.5741 -5.6597 3.0399 43 1 -0.2242 -6.7666 3.2514 44 1 -0.7707 -6.5698 1.5683 45 1 -1.4365 -9.2740 3.8072 46 1 2.5914 -7.9426 0.3701 47 1 1.0671 -7.3136 -0.3043 48 1 2.7690 -5.5807 -0.4846 49 1 3.1407 -5.7636 1.2461 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021669856.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:41:26 Heat of formation + Delta-G solvation = -14.844628 kcal Electronic energy + Delta-G solvation = -31753.655983 eV Core-core repulsion = 27681.476970 eV Total energy + Delta-G solvation = -4072.179013 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.28275 -40.04571 -38.28359 -37.21941 -35.65121 -34.16646 -32.82270 -32.63856 -30.95385 -30.20457 -29.40655 -28.24910 -25.67414 -25.38834 -24.03317 -22.97627 -22.22884 -22.03733 -21.39405 -19.75358 -18.72747 -17.92267 -17.74048 -17.10971 -16.70258 -16.29985 -15.94663 -15.13386 -14.96658 -14.78842 -14.42079 -14.35044 -13.99898 -13.67759 -13.55444 -13.43244 -13.20399 -12.99941 -12.84991 -12.78537 -12.60532 -12.36177 -12.30311 -12.25626 -12.04967 -11.62868 -11.19399 -10.98778 -10.77860 -10.67459 -10.51422 -10.25362 -10.10622 -10.06089 -10.00571 -9.90102 -9.71073 -9.59541 -9.43290 -9.20702 -8.52984 -8.34671 -6.71463 -5.83353 -3.23839 0.36248 0.80849 2.57590 2.91999 3.20886 3.34207 3.38656 3.43139 3.44628 4.18943 4.28238 4.37374 4.46500 4.65028 4.85431 4.89067 5.06413 5.09463 5.15027 5.28446 5.33234 5.38360 5.40342 5.42914 5.44468 5.45843 5.61967 5.68099 5.73418 5.83434 5.93828 6.00979 6.03617 6.07618 6.17055 6.31699 6.37630 6.42506 6.47009 6.64571 6.74684 6.84472 6.90990 6.99177 7.05722 7.25191 7.45788 7.49327 7.58170 7.77682 8.15525 8.40242 9.16676 9.80445 10.38303 11.25619 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.023253 B = 0.002780 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.842645 B =10070.639159 C =10336.893255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.022 3.978 3 C -0.193 4.193 4 C 0.326 3.674 5 O -0.481 6.481 6 N -0.508 5.508 7 C 0.162 3.838 8 C -0.188 4.188 9 C 0.563 3.437 10 O -0.532 6.532 11 N -0.596 5.596 12 C 0.103 3.897 13 C -0.133 4.133 14 C -0.104 4.104 15 C -0.114 4.114 16 H 0.058 0.942 17 C 0.179 3.821 18 N -0.587 5.587 19 C -0.251 4.251 20 H 0.066 0.934 21 C 0.005 3.995 22 N -0.899 5.899 23 Si 0.897 3.103 24 H -0.277 1.277 25 H -0.289 1.289 26 H -0.291 1.291 27 C 0.147 3.853 28 C -0.142 4.142 29 C 0.156 3.844 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.146 0.854 35 H 0.403 0.597 36 H 0.167 0.833 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.059 0.941 40 H 0.069 0.931 41 H 0.061 0.939 42 H 0.078 0.922 43 H 0.088 0.912 44 H 0.020 0.980 45 H 0.253 0.747 46 H 0.058 0.942 47 H 0.016 0.984 48 H 0.054 0.946 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.842 20.306 -1.872 21.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.014 3.986 3 C -0.214 4.214 4 C 0.148 3.852 5 O -0.289 6.289 6 N -0.227 5.227 7 C 0.004 3.996 8 C -0.194 4.194 9 C 0.350 3.650 10 O -0.409 6.409 11 N -0.328 5.328 12 C -0.020 4.020 13 C -0.172 4.172 14 C -0.142 4.142 15 C -0.135 4.135 16 H 0.076 0.924 17 C 0.052 3.948 18 N -0.310 5.310 19 C -0.381 4.381 20 H 0.083 0.917 21 C -0.194 4.194 22 N -0.542 5.542 23 Si 0.727 3.273 24 H -0.202 1.202 25 H -0.216 1.216 26 H -0.218 1.218 27 C 0.020 3.980 28 C -0.181 4.181 29 C 0.055 3.945 30 H 0.114 0.886 31 H 0.108 0.892 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.164 0.836 35 H 0.261 0.739 36 H 0.184 0.816 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.080 0.920 42 H 0.096 0.904 43 H 0.106 0.894 44 H 0.038 0.962 45 H 0.063 0.937 46 H 0.077 0.923 47 H 0.034 0.966 48 H 0.072 0.928 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.099 20.144 -2.794 21.540 hybrid contribution -0.477 -0.367 1.274 1.409 sum 6.622 19.777 -1.520 20.912 Atomic orbital electron populations 1.20905 0.88971 1.03451 1.04151 1.20270 0.97362 0.90715 0.90278 1.21934 0.93735 0.99426 1.06332 1.19323 0.87066 0.85223 0.93541 1.84735 1.75963 1.34102 1.34072 1.67195 1.41888 0.98188 1.15439 1.22770 0.90094 0.95283 0.91463 1.20990 0.95413 0.94766 1.08183 1.17925 0.82929 0.82986 0.81163 1.90803 1.29879 1.80375 1.39882 1.48492 1.41046 1.12787 1.30455 1.21972 0.91233 1.00853 0.87989 1.22039 1.00569 0.99039 0.95504 1.21461 0.99442 0.94196 0.99092 1.22011 0.97327 1.01091 0.93091 0.92404 1.20661 0.89442 0.83422 1.01253 1.44017 1.43914 1.25565 1.17460 1.19147 0.94967 1.06183 1.17796 0.91654 1.25011 0.94882 0.98309 1.01207 1.70073 0.99337 1.47204 1.37632 0.86310 0.78184 0.80020 0.82786 1.20234 1.21587 1.21793 1.20532 0.95829 0.92450 0.89144 1.22127 0.98388 0.97348 1.00287 1.21384 0.95629 0.78583 0.98920 0.88630 0.89242 0.90876 0.90276 0.83600 0.73891 0.81598 0.90863 0.90628 0.92194 0.91245 0.91981 0.90356 0.89417 0.96173 0.93672 0.92338 0.96585 0.92770 0.91727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.15 9.07 36.00 0.33 -0.83 16 2 C 0.02 0.23 5.94 -103.96 -0.62 -0.38 16 3 C -0.19 -1.76 9.72 -39.34 -0.38 -2.14 16 4 C 0.33 3.31 7.74 -16.96 -0.13 3.18 16 5 O -0.48 -3.97 13.55 -18.20 -0.25 -4.21 16 6 N -0.51 -5.89 10.37 -12.96 -0.13 -6.03 16 7 C 0.16 1.81 8.72 -17.14 -0.15 1.66 16 8 C -0.19 -2.28 4.84 -104.83 -0.51 -2.79 16 9 C 0.56 8.26 6.40 -12.43 -0.08 8.18 16 10 O -0.53 -9.51 15.27 5.29 0.08 -9.43 16 11 N -0.60 -8.40 2.65 -165.78 -0.44 -8.84 16 12 C 0.10 1.18 4.86 -3.48 -0.02 1.16 16 13 C -0.13 -1.64 6.10 -26.35 -0.16 -1.80 16 14 C -0.10 -1.68 4.82 -26.74 -0.13 -1.81 16 15 C -0.11 -2.04 2.50 -90.73 -0.23 -2.27 16 16 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 17 C 0.18 4.02 4.69 -3.94 -0.02 4.01 16 18 N -0.59 -13.77 2.58 -173.54 -0.45 -14.22 16 19 C -0.25 -6.53 9.58 -15.06 -0.14 -6.68 16 20 H 0.07 1.68 7.90 -52.49 -0.41 1.27 16 21 C 0.00 0.13 4.84 -17.43 -0.08 0.05 16 22 N -0.90 -25.32 11.39 55.49 0.63 -24.69 16 23 Si 0.90 20.96 29.60 -169.99 -5.03 15.93 16 24 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 25 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 27 C 0.15 2.95 6.44 -4.51 -0.03 2.93 16 28 C -0.14 -2.35 4.96 -27.38 -0.14 -2.48 16 29 C 0.16 2.62 2.65 -67.33 -0.18 2.44 16 30 H 0.10 1.81 7.06 -51.93 -0.37 1.45 16 31 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 33 H 0.08 0.91 6.97 -51.93 -0.36 0.55 16 34 H 0.15 0.95 8.06 -52.48 -0.42 0.53 16 35 H 0.40 1.20 9.06 45.56 0.41 1.61 16 36 H 0.17 1.61 7.36 -52.48 -0.39 1.22 16 37 H 0.07 0.80 7.25 -51.93 -0.38 0.42 16 38 H 0.08 0.76 5.12 -51.93 -0.27 0.49 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 42 H 0.08 1.38 6.16 -51.93 -0.32 1.06 16 43 H 0.09 2.21 6.17 -51.93 -0.32 1.89 16 44 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 46 H 0.06 1.15 7.94 -51.93 -0.41 0.73 16 47 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 48 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 49 H 0.06 1.05 5.40 -51.93 -0.28 0.77 16 LS Contribution 376.57 15.07 5.67 5.67 Total: -1.00 -31.79 376.57 -9.03 -40.82 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -6.45 Total: 2.56 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: -2.66 Total: 2.42 kcal Atomic # 7 Polarization: -53.38 SS G_CDS: -0.39 Total: -53.77 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: -0.17 Total: -13.64 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.03 Total: 15.93 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.79 -9.03 -40.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021669856.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.974 kcal (2) G-P(sol) polarization free energy of solvation -31.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds