Wall clock time and date at job start Wed Apr 1 2020 03:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38005 * 120.82097 * 2 1 4 4 C 1.39119 * 119.26636 * 179.97438 * 3 2 1 5 5 O 1.35501 * 119.52758 * 179.97438 * 4 3 2 6 6 N 1.32439 * 120.94986 * 0.02562 * 4 3 2 7 7 C 1.31641 * 121.79803 * 359.97438 * 6 4 3 8 8 C 1.39561 * 120.62513 * 359.74099 * 7 6 4 9 9 C 1.47616 * 120.49912 * 180.26049 * 8 7 6 10 10 O 1.21588 * 120.00263 * 228.89844 * 9 8 7 11 11 N 1.34778 * 120.00006 * 48.89902 * 9 8 7 12 12 C 1.46942 * 120.84668 * 5.13946 * 11 9 8 13 13 C 1.53613 * 108.77268 * 125.92996 * 12 11 9 14 14 C 1.53121 * 109.40361 * 54.30947 * 13 12 11 15 15 C 1.52856 * 109.34299 * 299.21534 * 14 13 12 16 16 H 1.09001 * 109.25508 * 302.49926 * 15 14 13 17 17 C 1.52777 * 109.56795 * 182.83645 * 15 14 13 18 18 N 1.46895 * 109.18519 * 293.09034 * 17 15 14 19 19 C 1.36934 * 120.77512 * 126.62602 * 18 17 15 20 20 H 1.07998 * 120.00056 * 208.11430 * 19 18 17 21 21 C 1.38812 * 120.00227 * 28.12168 * 19 18 17 22 22 N 1.31619 * 119.99951 * 19.75151 * 21 19 18 23 23 Si 1.86796 * 119.99981 * 199.75696 * 21 19 18 24 24 H 1.48502 * 109.47439 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47197 * 119.99970 * 23 21 19 26 26 H 1.48499 * 109.46907 * 239.99763 * 23 21 19 27 27 C 1.46976 * 118.44640 * 306.64357 * 18 17 15 28 28 C 1.51553 * 109.37698 * 53.47289 * 27 18 17 29 29 C 1.47308 * 120.84513 * 185.42018 * 11 9 8 30 30 H 1.09001 * 110.07975 * 355.09224 * 29 11 9 31 31 H 1.08998 * 109.47373 * 92.16623 * 1 2 3 32 32 H 1.09007 * 109.47149 * 332.16843 * 1 2 3 33 33 H 1.08994 * 109.47308 * 212.16720 * 1 2 3 34 34 H 1.08004 * 120.36263 * 359.95835 * 3 2 1 35 35 H 0.96704 * 113.99508 * 90.00092 * 5 4 3 36 36 H 1.08004 * 119.68271 * 179.97438 * 7 6 4 37 37 H 1.09003 * 109.54785 * 245.84444 * 12 11 9 38 38 H 1.09000 * 109.54376 * 6.11421 * 12 11 9 39 39 H 1.09000 * 109.61609 * 294.26581 * 13 12 11 40 40 H 1.08991 * 109.39456 * 174.21845 * 13 12 11 41 41 H 1.08997 * 109.49278 * 179.25717 * 14 13 12 42 42 H 1.09000 * 109.49374 * 59.17624 * 14 13 12 43 43 H 1.09004 * 109.51335 * 52.99499 * 17 15 14 44 44 H 1.09000 * 109.52056 * 173.11475 * 17 15 14 45 45 H 0.97002 * 119.99936 * 180.02562 * 22 21 19 46 46 H 1.09003 * 109.61124 * 174.06010 * 27 18 17 47 47 H 1.09005 * 109.61255 * 294.39676 * 27 18 17 48 48 H 1.09003 * 110.30671 * 185.36460 * 28 27 18 49 49 H 1.09007 * 107.76404 * 65.95315 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1851 0.0000 4 6 3.6047 1.1474 0.0005 5 8 4.3043 2.3079 0.0000 6 7 4.2548 -0.0065 0.0005 7 6 3.6205 -1.1600 0.0005 8 6 2.2256 -1.2043 0.0060 9 6 1.5171 -2.4993 0.0117 10 8 0.6150 -2.7024 -0.7778 11 7 1.8702 -3.4567 0.8922 12 6 2.8796 -3.1933 1.9272 13 6 2.2825 -3.5397 3.2995 14 6 1.7574 -4.9779 3.2774 15 6 0.6647 -5.1017 2.2157 16 1 -0.1291 -4.3866 2.4318 17 6 0.0880 -6.5163 2.2375 18 7 1.1181 -7.4644 1.7930 19 6 1.4470 -8.5513 2.5582 20 1 2.4403 -8.9715 2.5010 21 6 0.5037 -9.1133 3.4075 22 7 -0.7774 -8.8815 3.2136 23 14 1.0523 -10.1985 4.8255 24 1 2.5338 -10.3016 4.8255 25 1 0.5970 -9.6046 6.1082 26 1 0.4623 -11.5523 4.6697 27 6 1.7879 -7.2190 0.5080 28 6 2.3518 -5.8123 0.4955 29 6 1.2586 -4.7957 0.8377 30 1 0.4758 -4.8190 0.0795 31 1 -0.3634 -0.0388 -1.0269 32 1 -0.3634 0.9088 0.4798 33 1 -0.3633 -0.8699 0.5471 34 1 1.6935 2.1314 -0.0007 35 1 4.5070 2.6453 0.8833 36 1 4.1849 -2.0808 0.0001 37 1 3.7599 -3.8091 1.7431 38 1 3.1586 -2.1399 1.9046 39 1 1.4631 -2.8572 3.5249 40 1 3.0539 -3.4464 4.0638 41 1 1.3454 -5.2297 4.2545 42 1 2.5741 -5.6597 3.0399 43 1 -0.2242 -6.7666 3.2514 44 1 -0.7707 -6.5698 1.5683 45 1 -1.4365 -9.2740 3.8072 46 1 2.5914 -7.9426 0.3701 47 1 1.0671 -7.3136 -0.3043 48 1 2.7690 -5.5807 -0.4846 49 1 3.1407 -5.7636 1.2461 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021669856.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:40:56 Heat of formation + Delta-G solvation = -37.342781 kcal Electronic energy + Delta-G solvation = -31754.631576 eV Core-core repulsion = 27681.476970 eV Total energy + Delta-G solvation = -4073.154606 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 23.05 seconds Orbital eigenvalues (eV) -42.23975 -41.12891 -39.51700 -38.00653 -37.14014 -34.96481 -34.43017 -34.03729 -32.24457 -31.51047 -30.87754 -29.04688 -27.30064 -26.66418 -25.12021 -24.21498 -23.51545 -23.20188 -22.81101 -20.95113 -19.49059 -19.40772 -18.74610 -18.40221 -17.95469 -17.32498 -16.97382 -16.80837 -16.18194 -15.86465 -15.79992 -15.44990 -15.19638 -15.06275 -14.84909 -14.70024 -14.24076 -14.12372 -14.09097 -13.84835 -13.84045 -13.58494 -13.48650 -13.21600 -13.12284 -12.94375 -12.72826 -12.61410 -12.49336 -12.19431 -11.94879 -11.84023 -11.79848 -11.45914 -11.35588 -11.20592 -10.98241 -10.67646 -10.51618 -10.48140 -10.02082 -9.60014 -8.68248 -7.86515 -5.29831 -0.43619 0.04543 1.47212 1.50314 1.52947 1.60110 1.83817 2.44290 2.52936 2.62022 3.29295 3.31145 3.50315 3.55708 3.64057 3.77992 3.88815 3.95560 3.97122 4.07107 4.17624 4.22869 4.35144 4.37625 4.45744 4.53287 4.57573 4.64801 4.66638 4.67738 4.76066 4.84493 4.91864 4.98436 4.99688 5.05365 5.09764 5.13809 5.17672 5.22394 5.32887 5.37223 5.44452 5.56097 5.59723 5.68670 5.70863 6.37115 6.39873 6.54353 6.77997 7.02513 7.15412 7.85749 8.40131 9.21032 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.023253 B = 0.002780 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.842645 B =10070.639159 C =10336.893255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.017 3.983 3 C -0.183 4.183 4 C 0.330 3.670 5 O -0.487 6.487 6 N -0.526 5.526 7 C 0.167 3.833 8 C -0.205 4.205 9 C 0.566 3.434 10 O -0.573 6.573 11 N -0.593 5.593 12 C 0.102 3.898 13 C -0.124 4.124 14 C -0.097 4.097 15 C -0.103 4.103 16 H 0.055 0.945 17 C 0.190 3.810 18 N -0.600 5.600 19 C -0.253 4.253 20 H 0.070 0.930 21 C -0.048 4.048 22 N -0.936 5.936 23 Si 0.961 3.039 24 H -0.263 1.263 25 H -0.291 1.291 26 H -0.297 1.297 27 C 0.144 3.856 28 C -0.126 4.126 29 C 0.165 3.835 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.103 0.897 33 H 0.055 0.945 34 H 0.175 0.825 35 H 0.426 0.574 36 H 0.179 0.821 37 H 0.089 0.911 38 H 0.099 0.901 39 H 0.061 0.939 40 H 0.098 0.902 41 H 0.047 0.953 42 H 0.067 0.933 43 H 0.056 0.944 44 H -0.016 1.016 45 H 0.248 0.752 46 H 0.065 0.935 47 H 0.002 0.998 48 H 0.073 0.927 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.615 23.024 -1.267 24.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.009 3.991 3 C -0.204 4.204 4 C 0.152 3.848 5 O -0.298 6.298 6 N -0.246 5.246 7 C 0.009 3.991 8 C -0.210 4.210 9 C 0.354 3.646 10 O -0.453 6.453 11 N -0.323 5.323 12 C -0.020 4.020 13 C -0.162 4.162 14 C -0.135 4.135 15 C -0.124 4.124 16 H 0.074 0.926 17 C 0.063 3.937 18 N -0.323 5.323 19 C -0.383 4.383 20 H 0.088 0.912 21 C -0.244 4.244 22 N -0.582 5.582 23 Si 0.790 3.210 24 H -0.187 1.187 25 H -0.218 1.218 26 H -0.225 1.225 27 C 0.018 3.982 28 C -0.165 4.165 29 C 0.062 3.938 30 H 0.085 0.915 31 H 0.101 0.899 32 H 0.122 0.878 33 H 0.074 0.926 34 H 0.193 0.807 35 H 0.289 0.711 36 H 0.196 0.804 37 H 0.107 0.893 38 H 0.117 0.883 39 H 0.080 0.920 40 H 0.116 0.884 41 H 0.066 0.934 42 H 0.085 0.915 43 H 0.075 0.925 44 H 0.002 0.998 45 H 0.057 0.943 46 H 0.083 0.917 47 H 0.020 0.980 48 H 0.092 0.908 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 9.927 22.903 -2.171 25.056 hybrid contribution -1.345 -1.136 1.015 2.032 sum 8.582 21.767 -1.156 23.427 Atomic orbital electron populations 1.20889 0.88720 1.03882 1.03714 1.20440 0.97708 0.90911 0.90088 1.22133 0.93377 0.99876 1.04988 1.19533 0.87588 0.85371 0.92288 1.84689 1.75700 1.33205 1.36209 1.67256 1.42293 0.98684 1.16353 1.22886 0.89530 0.95824 0.90884 1.20789 0.95871 0.93630 1.10724 1.18304 0.82297 0.83692 0.80273 1.90783 1.31824 1.81180 1.41492 1.48402 1.41297 1.11466 1.31182 1.22199 0.90673 1.02684 0.86413 1.21978 1.01412 0.95836 0.96952 1.21352 0.98022 0.96908 0.97227 1.21777 0.98065 0.97562 0.95020 0.92639 1.20391 0.88735 0.86234 0.98331 1.44221 1.44017 1.25359 1.18684 1.19473 0.94971 1.06251 1.17590 0.91194 1.25742 0.94866 1.00180 1.03590 1.70229 1.00400 1.48937 1.38608 0.85301 0.78343 0.77761 0.79612 1.18713 1.21795 1.22494 1.20662 0.95411 0.95029 0.87115 1.21926 0.98141 0.94667 1.01798 1.20986 0.95235 0.80568 0.97016 0.91450 0.89902 0.87834 0.92641 0.80722 0.71135 0.80377 0.89259 0.88304 0.92021 0.88398 0.93444 0.91482 0.92526 0.99770 0.94254 0.91693 0.98032 0.90820 0.90416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.10 9.07 71.23 0.65 -1.45 16 2 C 0.02 0.32 5.94 -19.43 -0.12 0.20 16 3 C -0.18 -2.69 9.72 22.43 0.22 -2.47 16 4 C 0.33 5.55 7.74 84.81 0.66 6.21 16 5 O -0.49 -6.23 13.55 -88.03 -1.19 -7.42 16 6 N -0.53 -10.58 10.37 -307.80 -3.19 -13.78 16 7 C 0.17 3.27 8.72 85.04 0.74 4.01 16 8 C -0.20 -4.58 4.84 -20.00 -0.10 -4.68 16 9 C 0.57 16.19 6.40 86.72 0.56 16.75 16 10 O -0.57 -20.88 15.27 -3.99 -0.06 -20.94 16 11 N -0.59 -15.98 2.65 -796.67 -2.11 -18.09 16 12 C 0.10 2.04 4.86 86.50 0.42 2.46 16 13 C -0.12 -2.71 6.10 30.84 0.19 -2.52 16 14 C -0.10 -3.06 4.82 30.59 0.15 -2.92 16 15 C -0.10 -3.79 2.50 -10.87 -0.03 -3.82 16 16 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 17 C 0.19 9.04 4.69 86.23 0.40 9.45 16 18 N -0.60 -29.01 2.58 -702.95 -1.81 -30.82 16 19 C -0.25 -13.34 9.58 84.03 0.80 -12.53 16 20 H 0.07 3.58 7.90 -2.91 -0.02 3.55 16 21 C -0.05 -2.64 4.84 84.86 0.41 -2.23 16 22 N -0.94 -55.05 11.39 21.65 0.25 -54.81 16 23 Si 0.96 43.83 29.60 68.60 2.03 45.86 16 24 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 25 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16 26 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 27 C 0.14 5.84 6.44 85.81 0.55 6.39 16 28 C -0.13 -4.06 4.96 30.17 0.15 -3.91 16 29 C 0.16 5.57 2.65 44.94 0.12 5.69 16 30 H 0.07 2.68 7.06 -2.39 -0.02 2.66 16 31 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.10 1.18 8.09 -2.38 -0.02 1.16 16 33 H 0.05 1.27 6.97 -2.39 -0.02 1.26 16 34 H 0.18 1.50 8.06 -2.91 -0.02 1.48 16 35 H 0.43 0.86 9.06 -74.05 -0.67 0.19 16 36 H 0.18 2.90 7.36 -2.91 -0.02 2.87 16 37 H 0.09 1.57 7.25 -2.39 -0.02 1.56 16 38 H 0.10 1.61 5.12 -2.39 -0.01 1.60 16 39 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.07 2.27 6.16 -2.39 -0.01 2.26 16 43 H 0.06 3.04 6.17 -2.38 -0.01 3.02 16 44 H -0.02 -0.84 8.14 -2.39 -0.02 -0.86 16 45 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 46 H 0.06 2.52 7.94 -2.39 -0.02 2.50 16 47 H 0.00 0.07 8.14 -2.38 -0.02 0.05 16 48 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 49 H 0.08 2.34 5.40 -2.38 -0.01 2.33 16 Total: -1.00 -72.17 376.57 0.00 -72.18 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: 0.31 Total: 13.20 kcal Atomic # 6 Polarization: 8.84 SS G_CDS: 5.78 Total: 14.62 kcal Atomic # 7 Polarization: -110.63 SS G_CDS: -6.87 Total: -117.50 kcal Atomic # 8 Polarization: -27.11 SS G_CDS: -1.25 Total: -28.36 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -72.17 0.00 -72.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021669856.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.833 kcal (2) G-P(sol) polarization free energy of solvation -72.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 23.05 seconds