Wall clock time and date at job start Wed Apr 1 2020 05:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35923 * 117.00014 * 2 1 4 4 C 1.38851 * 120.40624 * 0.02562 * 3 2 1 5 5 N 1.31875 * 121.00045 * 179.97438 * 4 3 2 6 6 C 1.31691 * 121.94206 * 359.70696 * 5 4 3 7 7 C 1.39526 * 120.68436 * 0.58723 * 6 5 4 8 8 C 1.47851 * 120.52415 * 179.69919 * 7 6 5 9 9 O 1.21557 * 120.00156 * 133.38168 * 8 7 6 10 10 N 1.34776 * 120.00521 * 313.38118 * 8 7 6 11 11 C 1.49214 * 126.05725 * 354.84937 * 10 8 7 12 12 C 1.50345 * 104.86468 * 172.90091 * 11 10 8 13 13 H 1.09001 * 110.05644 * 278.94217 * 12 11 10 14 14 C 1.50999 * 125.55536 * 144.30991 * 12 11 10 15 15 C 1.56394 * 101.59889 * 203.99152 * 14 12 11 16 16 C 1.55941 * 105.78768 * 25.01950 * 15 14 12 17 17 H 1.09004 * 110.61198 * 126.26938 * 16 15 14 18 18 N 1.46507 * 110.49314 * 248.87181 * 16 15 14 19 19 C 1.36930 * 120.00018 * 269.73340 * 18 16 15 20 20 H 1.07995 * 120.00522 * 0.02562 * 19 18 16 21 21 C 1.38816 * 119.99810 * 180.27633 * 19 18 16 22 22 N 1.31618 * 120.00017 * 179.72576 * 21 19 18 23 23 Si 1.86803 * 120.00078 * 359.72444 * 21 19 18 24 24 H 1.48498 * 109.47235 * 89.99940 * 23 21 19 25 25 H 1.48494 * 109.47250 * 210.00294 * 23 21 19 26 26 H 1.48501 * 109.47021 * 330.00224 * 23 21 19 27 27 C 1.50294 * 104.15614 * 7.53974 * 16 15 14 28 28 H 1.09003 * 109.98819 * 79.59044 * 27 16 15 29 29 C 1.49699 * 126.06204 * 174.81103 * 10 8 7 30 30 C 1.38844 * 120.40478 * 180.02562 * 3 2 1 31 31 C 1.50705 * 120.87780 * 359.97438 * 30 3 2 32 32 H 1.09002 * 109.47249 * 300.00226 * 1 2 3 33 33 H 1.09001 * 109.47493 * 59.99803 * 1 2 3 34 34 H 1.08999 * 109.47486 * 180.02562 * 1 2 3 35 35 H 1.08005 * 119.49709 * 0.02562 * 4 3 2 36 36 H 1.08002 * 119.65212 * 180.31193 * 6 5 4 37 37 H 1.08998 * 110.36005 * 291.74745 * 11 10 8 38 38 H 1.09004 * 110.36309 * 53.94543 * 11 10 8 39 39 H 1.09007 * 111.00239 * 322.07136 * 14 12 11 40 40 H 1.09002 * 111.00129 * 85.86990 * 14 12 11 41 41 H 1.09001 * 110.18736 * 265.94115 * 15 14 12 42 42 H 1.08999 * 110.18990 * 144.09556 * 15 14 12 43 43 H 0.96999 * 119.99561 * 89.73878 * 18 16 15 44 44 H 0.97002 * 119.99719 * 179.97438 * 22 21 19 45 45 H 1.08996 * 110.84788 * 36.70338 * 29 10 8 46 46 H 1.09007 * 111.01590 * 273.16790 * 29 10 8 47 47 H 1.08997 * 109.46572 * 274.45252 * 31 30 3 48 48 H 1.08992 * 109.47187 * 34.45569 * 31 30 3 49 49 H 1.09001 * 109.46937 * 154.45610 * 31 30 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2981 2.3809 0.0005 5 7 1.8846 3.5621 0.0010 6 6 3.1954 3.6891 0.0068 7 6 4.0199 2.5635 0.0003 8 6 5.4911 2.7103 0.0001 9 8 6.1682 2.0472 0.7613 10 7 6.0816 3.5794 -0.8440 11 6 5.3976 4.3774 -1.9032 12 6 6.4563 5.3052 -2.4311 13 1 6.5628 6.1654 -1.7702 14 6 6.6005 5.7458 -3.8682 15 6 8.1177 6.1199 -3.9317 16 6 8.8073 5.2875 -2.8077 17 1 9.6389 4.7108 -3.2126 18 7 9.2704 6.1655 -1.7301 19 6 10.5326 6.6947 -1.7729 20 1 11.1866 6.4653 -2.6011 21 6 10.9734 7.5219 -0.7490 22 7 12.1885 8.0263 -0.7873 23 14 9.8420 7.9193 0.6834 24 1 10.0272 6.9087 1.7556 25 1 10.1681 9.2679 1.2125 26 1 8.4311 7.8970 0.2206 27 6 7.7240 4.3716 -2.3113 28 1 7.6106 3.5264 -2.9902 29 6 7.5397 3.9158 -0.8846 30 6 3.4321 1.2935 -0.0005 31 6 4.2810 0.0483 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 -0.3634 -1.0276 0.0005 35 1 0.2197 2.3226 0.0014 36 1 3.6366 4.6749 0.0121 37 1 5.0363 3.7235 -2.6968 38 1 4.5716 4.9459 -1.4758 39 1 6.3706 4.9287 -4.5522 40 1 5.9744 6.6137 -4.0755 41 1 8.2504 7.1857 -3.7457 42 1 8.5306 5.8529 -4.9045 43 1 8.6829 6.3717 -0.9863 44 1 12.4963 8.6046 -0.0720 45 1 8.1470 3.0347 -0.6774 46 1 7.7750 4.7198 -0.1871 47 1 4.4200 -0.2965 1.0241 48 1 3.7853 -0.7293 -0.5815 49 1 5.2516 0.2703 -0.4441 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026295012.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:35 Heat of formation + Delta-G solvation = 4.901372 kcal Electronic energy + Delta-G solvation = -30874.646928 eV Core-core repulsion = 26803.324166 eV Total energy + Delta-G solvation = -4071.322762 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.41383 -40.52095 -39.01582 -38.09030 -35.47046 -34.07644 -33.43447 -31.48403 -31.14904 -29.41847 -28.91898 -28.19729 -27.90926 -25.81573 -24.55267 -23.05212 -22.79476 -22.49108 -20.14146 -19.86133 -19.12135 -18.21710 -18.00412 -17.62041 -16.74373 -16.62668 -16.42208 -16.11679 -15.25654 -14.94978 -14.67774 -14.60968 -14.29713 -14.14816 -13.94969 -13.71656 -13.55371 -13.12191 -13.09652 -12.74097 -12.59893 -12.45456 -12.41187 -12.13127 -12.03871 -11.93756 -11.89700 -11.45787 -11.17381 -10.94097 -10.76416 -10.53218 -10.44432 -10.29911 -10.15602 -9.87658 -9.73834 -9.60345 -9.56465 -8.96928 -8.86466 -8.71178 -7.31116 -5.79564 -3.15595 0.37819 0.84050 2.41716 2.61383 2.89221 3.34484 3.36877 3.38067 3.44596 3.92333 4.04382 4.13799 4.25224 4.38451 4.52234 4.56335 4.64012 4.72699 4.79584 4.90087 5.01031 5.03008 5.11850 5.16738 5.30429 5.37545 5.40632 5.43668 5.45208 5.50187 5.53631 5.63710 5.74302 5.81194 5.84723 5.86532 5.97266 6.03694 6.07658 6.13617 6.22038 6.27404 6.35993 6.46979 6.67215 6.70553 6.91123 7.35761 7.47656 7.96480 7.97106 8.39518 9.17036 9.89565 10.08384 11.38666 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018049 B = 0.002699 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.957235 B =10372.894920 C =10726.152696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.306 6.306 3 C 0.069 3.931 4 C 0.035 3.965 5 N -0.453 5.453 6 C 0.099 3.901 7 C -0.138 4.138 8 C 0.580 3.420 9 O -0.525 6.525 10 N -0.618 5.618 11 C 0.116 3.884 12 C -0.131 4.131 13 H 0.086 0.914 14 C -0.096 4.096 15 C -0.144 4.144 16 C 0.201 3.799 17 H 0.067 0.933 18 N -0.742 5.742 19 C -0.244 4.244 20 H 0.092 0.908 21 C 0.007 3.993 22 N -0.932 5.932 23 Si 0.879 3.121 24 H -0.283 1.283 25 H -0.291 1.291 26 H -0.278 1.278 27 C -0.123 4.123 28 H 0.081 0.919 29 C 0.131 3.869 30 C -0.023 4.023 31 C -0.108 4.108 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.105 0.895 35 H 0.162 0.838 36 H 0.165 0.835 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.077 0.923 42 H 0.058 0.942 43 H 0.360 0.640 44 H 0.260 0.740 45 H 0.084 0.916 46 H 0.079 0.921 47 H 0.084 0.916 48 H 0.074 0.926 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.372 -14.446 -3.139 29.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.218 6.218 3 C 0.022 3.978 4 C -0.122 4.122 5 N -0.162 5.162 6 C -0.060 4.060 7 C -0.144 4.144 8 C 0.367 3.633 9 O -0.402 6.402 10 N -0.352 5.352 11 C -0.006 4.006 12 C -0.150 4.150 13 H 0.105 0.895 14 C -0.134 4.134 15 C -0.185 4.185 16 C 0.090 3.910 17 H 0.085 0.915 18 N -0.385 5.385 19 C -0.374 4.374 20 H 0.109 0.891 21 C -0.189 4.189 22 N -0.580 5.580 23 Si 0.709 3.291 24 H -0.209 1.209 25 H -0.217 1.217 26 H -0.204 1.204 27 C -0.143 4.143 28 H 0.099 0.901 29 C 0.010 3.990 30 C -0.032 4.032 31 C -0.165 4.165 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.123 0.877 35 H 0.179 0.821 36 H 0.182 0.818 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.096 0.904 42 H 0.077 0.923 43 H 0.194 0.806 44 H 0.070 0.930 45 H 0.103 0.897 46 H 0.097 0.903 47 H 0.102 0.898 48 H 0.093 0.907 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -25.226 -14.271 -2.716 29.110 hybrid contribution -0.641 -0.032 1.116 1.288 sum -25.867 -14.303 -1.600 29.601 Atomic orbital electron populations 1.23157 0.77843 1.04564 1.01640 1.86098 1.21631 1.25504 1.88554 1.19710 0.92166 0.86092 0.99837 1.23059 1.00694 0.87072 1.01402 1.67564 1.11743 1.25932 1.10928 1.22927 0.88453 0.98273 0.96317 1.20724 0.94735 0.93855 1.05042 1.17534 0.86247 0.79276 0.80282 1.90825 1.64675 1.44734 1.39964 1.49784 1.09756 1.41662 1.34015 1.21452 0.95316 0.93601 0.90196 1.22260 0.95207 0.98280 0.99246 0.89537 1.21728 0.97965 1.00356 0.93356 1.23815 0.92689 1.02432 0.99541 1.20106 0.92912 0.89313 0.88697 0.91522 1.42795 1.14976 1.57219 1.23504 1.19070 0.88943 1.22738 1.06615 0.89053 1.24660 0.96176 0.99809 0.98272 1.69692 1.16733 1.37222 1.34311 0.86647 0.80558 0.77935 0.83934 1.20936 1.21711 1.20445 1.22548 0.97519 0.98404 0.95879 0.90057 1.21478 0.79067 1.01240 0.97176 1.19710 0.90910 0.95530 0.97097 1.20718 0.98788 0.93274 1.03670 0.92304 0.92289 0.87710 0.82096 0.81757 0.91130 0.90781 0.91826 0.91844 0.90401 0.92318 0.80622 0.93034 0.89716 0.90316 0.89795 0.90721 0.90521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.82 101.05 0.99 1.09 16 2 O -0.31 -2.60 9.75 -19.50 -0.19 -2.79 16 3 C 0.07 0.70 6.68 -39.13 -0.26 0.44 16 4 C 0.04 0.33 10.21 -17.31 -0.18 0.15 16 5 N -0.45 -5.09 10.34 -12.79 -0.13 -5.22 16 6 C 0.10 1.13 9.51 -17.13 -0.16 0.97 16 7 C -0.14 -1.73 5.37 -104.85 -0.56 -2.30 16 8 C 0.58 8.51 6.63 -12.33 -0.08 8.43 16 9 O -0.53 -9.34 15.82 5.32 0.08 -9.25 16 10 N -0.62 -8.45 3.43 -172.67 -0.59 -9.04 16 11 C 0.12 1.30 6.08 -3.86 -0.02 1.27 16 12 C -0.13 -1.66 2.73 -90.27 -0.25 -1.90 16 13 H 0.09 1.26 7.64 -51.93 -0.40 0.87 16 14 C -0.10 -1.13 6.71 -25.91 -0.17 -1.30 16 15 C -0.14 -2.17 6.73 -23.33 -0.16 -2.32 16 16 C 0.20 3.47 3.46 -67.70 -0.23 3.23 16 17 H 0.07 1.20 8.09 -51.93 -0.42 0.78 16 18 N -0.74 -16.24 4.61 -53.20 -0.25 -16.48 16 19 C -0.24 -6.55 10.44 -15.06 -0.16 -6.71 16 20 H 0.09 2.63 8.06 -52.49 -0.42 2.21 16 21 C 0.01 0.19 5.50 -17.43 -0.10 0.10 16 22 N -0.93 -28.77 13.97 55.49 0.78 -28.00 16 23 Si 0.88 21.77 27.73 -169.99 -4.71 17.06 16 24 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 25 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 26 H -0.28 -6.42 6.52 56.52 0.37 -6.05 16 27 C -0.12 -1.77 2.60 -90.34 -0.23 -2.00 16 28 H 0.08 1.06 8.13 -51.93 -0.42 0.64 16 29 C 0.13 2.02 6.55 -3.31 -0.02 2.00 16 30 C -0.02 -0.27 5.96 -103.76 -0.62 -0.89 16 31 C -0.11 -1.18 8.97 36.01 0.32 -0.86 16 32 H 0.06 0.20 7.67 -51.93 -0.40 -0.20 16 33 H 0.06 0.19 7.68 -51.93 -0.40 -0.21 16 34 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.16 1.00 6.30 -52.48 -0.33 0.67 16 36 H 0.17 1.69 6.41 -52.49 -0.34 1.35 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.73 5.55 -51.93 -0.29 0.44 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.08 1.36 7.98 -51.93 -0.41 0.94 16 42 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.36 7.86 4.05 -40.82 -0.17 7.69 16 44 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 45 H 0.08 1.36 8.06 -51.93 -0.42 0.94 16 46 H 0.08 1.35 6.96 -51.93 -0.36 0.99 16 47 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 48 H 0.07 0.70 7.76 -51.93 -0.40 0.29 16 49 H 0.08 0.93 6.52 -51.93 -0.34 0.60 16 LS Contribution 384.34 15.07 5.79 5.79 Total: -1.00 -33.03 384.34 -8.33 -41.36 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -7.22 Total: 7.19 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: -1.89 Total: -0.61 kcal Atomic # 7 Polarization: -58.55 SS G_CDS: -0.19 Total: -58.75 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: -0.11 Total: -12.05 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.71 Total: 17.06 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.03 -8.33 -41.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026295012.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.262 kcal (2) G-P(sol) polarization free energy of solvation -33.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds