Wall clock time and date at job start Wed Apr 1 2020 05:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35923 * 117.00014 * 2 1 4 4 C 1.38851 * 120.40624 * 0.02562 * 3 2 1 5 5 N 1.31875 * 121.00045 * 179.97438 * 4 3 2 6 6 C 1.31691 * 121.94206 * 359.70696 * 5 4 3 7 7 C 1.39526 * 120.68436 * 0.58723 * 6 5 4 8 8 C 1.47851 * 120.52415 * 179.69919 * 7 6 5 9 9 O 1.21557 * 120.00156 * 133.38168 * 8 7 6 10 10 N 1.34776 * 120.00521 * 313.38118 * 8 7 6 11 11 C 1.49214 * 126.05725 * 354.84937 * 10 8 7 12 12 C 1.50345 * 104.86468 * 172.90091 * 11 10 8 13 13 H 1.09001 * 110.05644 * 278.94217 * 12 11 10 14 14 C 1.50999 * 125.55536 * 144.30991 * 12 11 10 15 15 C 1.56394 * 101.59889 * 203.99152 * 14 12 11 16 16 C 1.55941 * 105.78768 * 25.01950 * 15 14 12 17 17 H 1.09004 * 110.61198 * 126.26938 * 16 15 14 18 18 N 1.46507 * 110.49314 * 248.87181 * 16 15 14 19 19 C 1.36930 * 120.00018 * 269.73340 * 18 16 15 20 20 H 1.07995 * 120.00522 * 0.02562 * 19 18 16 21 21 C 1.38816 * 119.99810 * 180.27633 * 19 18 16 22 22 N 1.31618 * 120.00017 * 179.72576 * 21 19 18 23 23 Si 1.86803 * 120.00078 * 359.72444 * 21 19 18 24 24 H 1.48498 * 109.47235 * 89.99940 * 23 21 19 25 25 H 1.48494 * 109.47250 * 210.00294 * 23 21 19 26 26 H 1.48501 * 109.47021 * 330.00224 * 23 21 19 27 27 C 1.50294 * 104.15614 * 7.53974 * 16 15 14 28 28 H 1.09003 * 109.98819 * 79.59044 * 27 16 15 29 29 C 1.49699 * 126.06204 * 174.81103 * 10 8 7 30 30 C 1.38844 * 120.40478 * 180.02562 * 3 2 1 31 31 C 1.50705 * 120.87780 * 359.97438 * 30 3 2 32 32 H 1.09002 * 109.47249 * 300.00226 * 1 2 3 33 33 H 1.09001 * 109.47493 * 59.99803 * 1 2 3 34 34 H 1.08999 * 109.47486 * 180.02562 * 1 2 3 35 35 H 1.08005 * 119.49709 * 0.02562 * 4 3 2 36 36 H 1.08002 * 119.65212 * 180.31193 * 6 5 4 37 37 H 1.08998 * 110.36005 * 291.74745 * 11 10 8 38 38 H 1.09004 * 110.36309 * 53.94543 * 11 10 8 39 39 H 1.09007 * 111.00239 * 322.07136 * 14 12 11 40 40 H 1.09002 * 111.00129 * 85.86990 * 14 12 11 41 41 H 1.09001 * 110.18736 * 265.94115 * 15 14 12 42 42 H 1.08999 * 110.18990 * 144.09556 * 15 14 12 43 43 H 0.96999 * 119.99561 * 89.73878 * 18 16 15 44 44 H 0.97002 * 119.99719 * 179.97438 * 22 21 19 45 45 H 1.08996 * 110.84788 * 36.70338 * 29 10 8 46 46 H 1.09007 * 111.01590 * 273.16790 * 29 10 8 47 47 H 1.08997 * 109.46572 * 274.45252 * 31 30 3 48 48 H 1.08992 * 109.47187 * 34.45569 * 31 30 3 49 49 H 1.09001 * 109.46937 * 154.45610 * 31 30 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2981 2.3809 0.0005 5 7 1.8846 3.5621 0.0010 6 6 3.1954 3.6891 0.0068 7 6 4.0199 2.5635 0.0003 8 6 5.4911 2.7103 0.0001 9 8 6.1682 2.0472 0.7613 10 7 6.0816 3.5794 -0.8440 11 6 5.3976 4.3774 -1.9032 12 6 6.4563 5.3052 -2.4311 13 1 6.5628 6.1654 -1.7702 14 6 6.6005 5.7458 -3.8682 15 6 8.1177 6.1199 -3.9317 16 6 8.8073 5.2875 -2.8077 17 1 9.6389 4.7108 -3.2126 18 7 9.2704 6.1655 -1.7301 19 6 10.5326 6.6947 -1.7729 20 1 11.1866 6.4653 -2.6011 21 6 10.9734 7.5219 -0.7490 22 7 12.1885 8.0263 -0.7873 23 14 9.8420 7.9193 0.6834 24 1 10.0272 6.9087 1.7556 25 1 10.1681 9.2679 1.2125 26 1 8.4311 7.8970 0.2206 27 6 7.7240 4.3716 -2.3113 28 1 7.6106 3.5264 -2.9902 29 6 7.5397 3.9158 -0.8846 30 6 3.4321 1.2935 -0.0005 31 6 4.2810 0.0483 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 -0.3634 -1.0276 0.0005 35 1 0.2197 2.3226 0.0014 36 1 3.6366 4.6749 0.0121 37 1 5.0363 3.7235 -2.6968 38 1 4.5716 4.9459 -1.4758 39 1 6.3706 4.9287 -4.5522 40 1 5.9744 6.6137 -4.0755 41 1 8.2504 7.1857 -3.7457 42 1 8.5306 5.8529 -4.9045 43 1 8.6829 6.3717 -0.9863 44 1 12.4963 8.6046 -0.0720 45 1 8.1470 3.0347 -0.6774 46 1 7.7750 4.7198 -0.1871 47 1 4.4200 -0.2965 1.0241 48 1 3.7853 -0.7293 -0.5815 49 1 5.2516 0.2703 -0.4441 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026295012.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:20 Heat of formation + Delta-G solvation = -17.266214 kcal Electronic energy + Delta-G solvation = -30875.608186 eV Core-core repulsion = 26803.324166 eV Total energy + Delta-G solvation = -4072.284021 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 14.82 seconds Orbital eigenvalues (eV) -42.30621 -41.53052 -40.01338 -38.91040 -36.86168 -35.12308 -34.90562 -33.00796 -32.36823 -30.54667 -30.16358 -28.91222 -28.46597 -27.16572 -25.48974 -24.80883 -23.80595 -23.41051 -21.19812 -20.80234 -20.57015 -19.80184 -18.96906 -18.61069 -17.61436 -17.51917 -17.36790 -16.90505 -16.66646 -16.30432 -15.88914 -15.67197 -15.47343 -15.14914 -15.03813 -14.74873 -14.60377 -14.49145 -13.99553 -13.93917 -13.87135 -13.53927 -13.45576 -13.34423 -13.05006 -12.94726 -12.78022 -12.69352 -12.39594 -12.34057 -12.21851 -11.94932 -11.92289 -11.64283 -11.44938 -11.38911 -11.02325 -10.92479 -10.66250 -10.51124 -9.85562 -9.54509 -9.27754 -8.01028 -5.32432 -0.45355 0.04510 1.34051 1.37972 1.43373 1.43691 1.60679 2.19800 2.47188 2.54799 2.88699 3.23888 3.31170 3.37681 3.40248 3.56638 3.58790 3.76880 3.86666 3.96004 4.10489 4.15192 4.24425 4.34136 4.38780 4.40309 4.41309 4.46048 4.54351 4.59009 4.60651 4.63669 4.68799 4.78528 4.80879 4.88779 4.93142 4.97865 5.03922 5.04741 5.13079 5.21488 5.28144 5.34586 5.42808 5.62349 5.82598 6.12050 6.24047 6.28881 6.68584 6.86941 7.10045 7.87306 8.04368 9.20742 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018049 B = 0.002699 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.957235 B =10372.894920 C =10726.152696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.318 6.318 3 C 0.076 3.924 4 C 0.043 3.957 5 N -0.463 5.463 6 C 0.097 3.903 7 C -0.150 4.150 8 C 0.579 3.421 9 O -0.567 6.567 10 N -0.614 5.614 11 C 0.120 3.880 12 C -0.117 4.117 13 H 0.067 0.933 14 C -0.081 4.081 15 C -0.139 4.139 16 C 0.189 3.811 17 H 0.053 0.947 18 N -0.745 5.745 19 C -0.218 4.218 20 H 0.062 0.938 21 C -0.063 4.063 22 N -0.984 5.984 23 Si 0.942 3.058 24 H -0.286 1.286 25 H -0.297 1.297 26 H -0.251 1.251 27 C -0.122 4.122 28 H 0.103 0.897 29 C 0.130 3.870 30 C -0.041 4.041 31 C -0.102 4.102 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.123 0.877 35 H 0.196 0.804 36 H 0.173 0.827 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.080 0.920 41 H 0.051 0.949 42 H 0.071 0.929 43 H 0.363 0.637 44 H 0.255 0.745 45 H 0.070 0.930 46 H 0.057 0.943 47 H 0.077 0.923 48 H 0.089 0.911 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.124 -15.376 -4.099 34.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.230 6.230 3 C 0.028 3.972 4 C -0.114 4.114 5 N -0.172 5.172 6 C -0.061 4.061 7 C -0.155 4.155 8 C 0.368 3.632 9 O -0.447 6.447 10 N -0.348 5.348 11 C -0.001 4.001 12 C -0.136 4.136 13 H 0.085 0.915 14 C -0.119 4.119 15 C -0.180 4.180 16 C 0.080 3.920 17 H 0.071 0.929 18 N -0.388 5.388 19 C -0.349 4.349 20 H 0.080 0.920 21 C -0.254 4.254 22 N -0.635 5.635 23 Si 0.770 3.230 24 H -0.213 1.213 25 H -0.224 1.224 26 H -0.176 1.176 27 C -0.142 4.142 28 H 0.122 0.878 29 C 0.009 3.991 30 C -0.050 4.050 31 C -0.158 4.158 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.141 0.859 35 H 0.212 0.788 36 H 0.190 0.810 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.110 0.890 40 H 0.099 0.901 41 H 0.070 0.930 42 H 0.090 0.910 43 H 0.196 0.804 44 H 0.064 0.936 45 H 0.088 0.912 46 H 0.076 0.924 47 H 0.095 0.905 48 H 0.108 0.892 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -30.056 -15.223 -3.733 33.898 hybrid contribution 0.782 0.107 1.334 1.550 sum -29.275 -15.116 -2.399 33.034 Atomic orbital electron populations 1.23523 0.75474 1.06376 1.02937 1.86100 1.24035 1.24733 1.88123 1.19691 0.91565 0.87035 0.98938 1.23586 1.02173 0.86209 0.99466 1.67639 1.11406 1.26788 1.11378 1.22997 0.88605 0.98175 0.96285 1.20521 0.93120 0.94791 1.07047 1.17910 0.87178 0.78588 0.79538 1.90796 1.65820 1.46417 1.41648 1.49782 1.08982 1.41613 1.34381 1.21600 0.94933 0.93488 0.90036 1.22220 0.94468 0.97290 0.99642 0.91457 1.21670 0.95135 1.02014 0.93073 1.23632 0.95378 1.00137 0.98808 1.20385 0.93726 0.89457 0.88451 0.92900 1.42784 1.13305 1.57660 1.25045 1.19050 0.90215 1.20935 1.04750 0.92039 1.25380 0.97711 1.00915 1.01419 1.69862 1.19020 1.39118 1.35493 0.85602 0.80070 0.76903 0.80384 1.21293 1.22417 1.17582 1.22370 0.97248 0.99030 0.95514 0.87842 1.21303 0.80464 0.99933 0.97440 1.19853 0.92062 0.95259 0.97798 1.20634 0.98082 0.93773 1.03341 0.91128 0.90750 0.85859 0.78784 0.80967 0.88841 0.88847 0.89024 0.90129 0.93013 0.90986 0.80361 0.93557 0.91175 0.92435 0.90457 0.89223 0.92292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.05 9.82 113.37 1.11 1.16 16 2 O -0.32 -4.48 9.75 -92.68 -0.90 -5.38 16 3 C 0.08 1.32 6.68 22.56 0.15 1.47 16 4 C 0.04 0.66 10.21 84.83 0.87 1.53 16 5 N -0.46 -8.96 10.34 -194.39 -2.01 -10.97 16 6 C 0.10 2.00 9.51 85.02 0.81 2.81 16 7 C -0.15 -3.54 5.37 -20.01 -0.11 -3.65 16 8 C 0.58 16.77 6.63 86.79 0.58 17.34 16 9 O -0.57 -20.67 15.82 -3.89 -0.06 -20.73 16 10 N -0.61 -16.06 3.43 -818.48 -2.80 -18.86 16 11 C 0.12 2.29 6.08 85.00 0.52 2.81 16 12 C -0.12 -2.63 2.73 -10.57 -0.03 -2.66 16 13 H 0.07 1.81 7.64 -2.39 -0.02 1.79 16 14 C -0.08 -1.60 6.71 31.12 0.21 -1.39 16 15 C -0.14 -3.95 6.73 32.79 0.22 -3.73 16 16 C 0.19 6.44 3.46 45.13 0.16 6.60 16 17 H 0.05 1.94 8.09 -2.38 -0.02 1.92 16 18 N -0.74 -32.85 4.61 -322.24 -1.49 -34.34 16 19 C -0.22 -12.08 10.44 84.04 0.88 -11.20 16 20 H 0.06 3.72 8.06 -2.91 -0.02 3.69 16 21 C -0.06 -3.70 5.50 84.86 0.47 -3.23 16 22 N -0.98 -63.14 13.97 21.65 0.30 -62.84 16 23 Si 0.94 45.97 27.73 68.60 1.90 47.87 16 24 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 25 H -0.30 -14.76 7.11 99.48 0.71 -14.05 16 26 H -0.25 -10.96 6.52 99.48 0.65 -10.31 16 27 C -0.12 -3.32 2.60 -10.61 -0.03 -3.34 16 28 H 0.10 2.42 8.13 -2.39 -0.02 2.40 16 29 C 0.13 4.00 6.55 85.08 0.56 4.55 16 30 C -0.04 -0.90 5.96 -19.30 -0.12 -1.01 16 31 C -0.10 -2.19 8.97 71.24 0.64 -1.55 16 32 H 0.07 0.19 7.67 -2.39 -0.02 0.18 16 33 H 0.07 0.15 7.68 -2.39 -0.02 0.13 16 34 H 0.12 0.14 8.14 -2.39 -0.02 0.12 16 35 H 0.20 1.51 6.30 -2.91 -0.02 1.49 16 36 H 0.17 3.10 6.41 -2.91 -0.02 3.08 16 37 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.09 1.49 5.55 -2.39 -0.01 1.48 16 39 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 40 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.05 1.75 7.98 -2.39 -0.02 1.73 16 42 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.36 15.71 4.05 -92.71 -0.38 15.33 16 44 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 45 H 0.07 2.33 8.06 -2.39 -0.02 2.31 16 46 H 0.06 2.00 6.96 -2.38 -0.02 1.99 16 47 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 48 H 0.09 1.57 7.76 -2.39 -0.02 1.55 16 49 H 0.06 1.46 6.52 -2.39 -0.02 1.44 16 Total: -1.00 -75.42 384.34 2.36 -73.06 By element: Atomic # 1 Polarization: 25.12 SS G_CDS: 0.54 Total: 25.66 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: 6.88 Total: 6.52 kcal Atomic # 7 Polarization: -121.01 SS G_CDS: -6.00 Total: -127.00 kcal Atomic # 8 Polarization: -25.14 SS G_CDS: -0.97 Total: -26.11 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 1.90 Total: 47.87 kcal Total: -75.42 2.36 -73.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026295012.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.792 kcal (2) G-P(sol) polarization free energy of solvation -75.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 14.82 seconds