Wall clock time and date at job start Wed Apr 1 2020 05:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35924 * 117.00187 * 2 1 4 4 C 1.38855 * 120.40180 * 359.97438 * 3 2 1 5 5 N 1.31881 * 121.00036 * 180.02562 * 4 3 2 6 6 C 1.31683 * 121.93988 * 359.70457 * 5 4 3 7 7 C 1.39524 * 120.68902 * 0.58189 * 6 5 4 8 8 C 1.47862 * 120.53039 * 179.70200 * 7 6 5 9 9 O 1.21552 * 119.99405 * 133.33119 * 8 7 6 10 10 N 1.34770 * 120.00083 * 313.32869 * 8 7 6 11 11 C 1.48538 * 126.17776 * 354.38346 * 10 8 7 12 12 C 1.50347 * 105.20299 * 172.69109 * 11 10 8 13 13 H 1.09005 * 110.04917 * 279.67385 * 12 11 10 14 14 C 1.50997 * 125.55430 * 144.47558 * 12 11 10 15 15 C 1.56408 * 101.59167 * 204.55279 * 14 12 11 16 16 C 1.55943 * 105.79008 * 25.01904 * 15 14 12 17 17 H 1.08996 * 110.48876 * 248.87470 * 16 15 14 18 18 N 1.46493 * 110.49610 * 126.20775 * 16 15 14 19 19 C 1.36945 * 119.99891 * 86.45056 * 18 16 15 20 20 H 1.08003 * 119.99682 * 0.02562 * 19 18 16 21 21 C 1.38807 * 119.99762 * 179.97438 * 19 18 16 22 22 N 1.31627 * 119.99530 * 180.02562 * 21 19 18 23 23 Si 1.86796 * 120.00646 * 0.02562 * 21 19 18 24 24 H 1.48499 * 109.47135 * 89.99339 * 23 21 19 25 25 H 1.48496 * 109.47538 * 210.00179 * 23 21 19 26 26 H 1.48503 * 109.46600 * 329.99998 * 23 21 19 27 27 C 1.50291 * 104.15387 * 7.54156 * 16 15 14 28 28 H 1.08993 * 109.99654 * 80.48161 * 27 16 15 29 29 C 1.49701 * 126.05827 * 174.80282 * 10 8 7 30 30 C 1.38843 * 120.40915 * 179.97438 * 3 2 1 31 31 C 1.50694 * 120.87594 * 0.02562 * 30 3 2 32 32 H 1.09005 * 109.47177 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47365 * 300.00110 * 1 2 3 34 34 H 1.09003 * 109.47302 * 60.00306 * 1 2 3 35 35 H 1.07997 * 119.50122 * 0.04449 * 4 3 2 36 36 H 1.08002 * 119.65636 * 180.29038 * 6 5 4 37 37 H 1.09000 * 109.58101 * 54.04394 * 11 10 8 38 38 H 1.09001 * 110.81333 * 291.96655 * 11 10 8 39 39 H 1.09003 * 111.00119 * 322.62801 * 14 12 11 40 40 H 1.08997 * 111.00302 * 86.47654 * 14 12 11 41 41 H 1.09005 * 110.18247 * 144.09481 * 15 14 12 42 42 H 1.08997 * 110.18424 * 265.85438 * 15 14 12 43 43 H 0.96994 * 120.00704 * 266.45545 * 18 16 15 44 44 H 0.97001 * 119.99381 * 180.02562 * 22 21 19 45 45 H 1.08994 * 110.84030 * 36.69765 * 29 10 8 46 46 H 1.08998 * 111.01848 * 273.16095 * 29 10 8 47 47 H 1.09009 * 109.46857 * 274.41466 * 31 30 3 48 48 H 1.08993 * 109.47843 * 34.41577 * 31 30 3 49 49 H 1.09004 * 109.47403 * 154.42167 * 31 30 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2981 2.3809 -0.0005 5 7 1.8845 3.5621 -0.0010 6 6 3.1952 3.6892 0.0047 7 6 4.0198 2.5637 -0.0006 8 6 5.4911 2.7105 -0.0007 9 8 6.1679 2.0487 0.7618 10 7 6.0817 3.5779 -0.8464 11 6 5.4052 4.3643 -1.9095 12 6 6.4568 5.3005 -2.4370 13 1 6.5602 6.1587 -1.7729 14 6 6.6013 5.7381 -3.8749 15 6 8.1186 6.1121 -3.9387 16 6 8.8080 5.2821 -2.8127 17 1 9.1522 5.9369 -2.0123 18 7 9.9243 4.5058 -3.3580 19 6 11.1661 5.0734 -3.4631 20 1 11.3225 6.0932 -3.1435 21 6 12.2240 4.3377 -3.9792 22 7 13.4177 4.8832 -4.0797 23 14 11.9537 2.5738 -4.5312 24 1 11.5674 2.5575 -5.9650 25 1 13.2076 1.7998 -4.3474 26 1 10.8709 1.9618 -3.7199 27 6 7.7245 4.3672 -2.3149 28 1 7.6220 3.5125 -2.9835 29 6 7.5398 3.9144 -0.8872 30 6 3.4321 1.2936 0.0005 31 6 4.2809 0.0485 0.0005 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 -0.3634 0.5138 -0.8900 35 1 0.2197 2.3226 -0.0002 36 1 3.6365 4.6749 0.0088 37 1 4.5783 4.9277 -1.4771 38 1 5.0454 3.7114 -2.7047 39 1 6.3717 4.9196 -4.5573 40 1 5.9759 6.6059 -4.0839 41 1 8.5318 5.8431 -4.9108 42 1 8.2511 7.1785 -3.7563 43 1 9.7840 3.5899 -3.6447 44 1 14.1569 4.3692 -4.4408 45 1 8.1470 3.0337 -0.6780 46 1 7.7749 4.7197 -0.1913 47 1 4.4198 -0.2965 1.0252 48 1 3.7854 -0.7292 -0.5806 49 1 5.2517 0.2705 -0.4427 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026295015.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:52 Heat of formation + Delta-G solvation = 3.645078 kcal Electronic energy + Delta-G solvation = -30542.731718 eV Core-core repulsion = 26471.354479 eV Total energy + Delta-G solvation = -4071.377239 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.44931 -40.53190 -39.02181 -38.12045 -35.59394 -34.10414 -33.52350 -31.51716 -31.20653 -29.51783 -28.86864 -28.21431 -27.93210 -25.75931 -24.57928 -23.04044 -22.74738 -22.35082 -20.41173 -19.90564 -19.31050 -18.26236 -17.91583 -17.48915 -16.77437 -16.72703 -16.49434 -16.22220 -15.21885 -15.01556 -14.76388 -14.60636 -14.32050 -14.22590 -13.92595 -13.73316 -13.36402 -13.13023 -13.11136 -12.88078 -12.67609 -12.48391 -12.37311 -12.16074 -12.02346 -11.95191 -11.90811 -11.57301 -11.22643 -10.90033 -10.84566 -10.59197 -10.43407 -10.37172 -10.07145 -9.90806 -9.79432 -9.63960 -9.58295 -8.96025 -8.89274 -8.76477 -7.30167 -5.79154 -3.15295 0.34454 0.81201 2.36524 2.58799 2.85571 3.33822 3.36489 3.39536 3.44886 3.88509 4.00665 4.10671 4.21210 4.35605 4.50011 4.57294 4.62680 4.68214 4.74974 4.87644 4.94676 5.00916 5.10469 5.14958 5.23278 5.32578 5.36476 5.42850 5.44273 5.49021 5.58753 5.65985 5.72347 5.78211 5.81901 5.84480 5.93120 5.98516 6.01763 6.08941 6.14522 6.19909 6.32577 6.49843 6.68218 6.68596 6.91687 7.31201 7.43886 7.92021 7.96719 8.40049 9.17693 9.90355 10.09225 11.38999 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017401 B = 0.002541 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.697921 B =11015.083684 C =11810.316545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.306 6.306 3 C 0.070 3.930 4 C 0.035 3.965 5 N -0.453 5.453 6 C 0.099 3.901 7 C -0.139 4.139 8 C 0.581 3.419 9 O -0.524 6.524 10 N -0.617 5.617 11 C 0.116 3.884 12 C -0.126 4.126 13 H 0.087 0.913 14 C -0.098 4.098 15 C -0.142 4.142 16 C 0.202 3.798 17 H 0.064 0.936 18 N -0.745 5.745 19 C -0.244 4.244 20 H 0.091 0.909 21 C 0.006 3.994 22 N -0.933 5.933 23 Si 0.883 3.117 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.277 1.277 27 C -0.124 4.124 28 H 0.080 0.920 29 C 0.128 3.872 30 C -0.023 4.023 31 C -0.109 4.109 32 H 0.105 0.895 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.162 0.838 36 H 0.166 0.834 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.075 0.925 42 H 0.060 0.940 43 H 0.361 0.639 44 H 0.259 0.741 45 H 0.085 0.915 46 H 0.078 0.922 47 H 0.084 0.916 48 H 0.074 0.926 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.136 -5.187 6.628 30.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.218 6.218 3 C 0.023 3.977 4 C -0.122 4.122 5 N -0.162 5.162 6 C -0.060 4.060 7 C -0.145 4.145 8 C 0.368 3.632 9 O -0.401 6.401 10 N -0.351 5.351 11 C -0.006 4.006 12 C -0.146 4.146 13 H 0.105 0.895 14 C -0.136 4.136 15 C -0.183 4.183 16 C 0.092 3.908 17 H 0.081 0.919 18 N -0.387 5.387 19 C -0.374 4.374 20 H 0.109 0.891 21 C -0.190 4.190 22 N -0.580 5.580 23 Si 0.713 3.287 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.203 1.203 27 C -0.144 4.144 28 H 0.098 0.902 29 C 0.007 3.993 30 C -0.032 4.032 31 C -0.166 4.166 32 H 0.123 0.877 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.179 0.821 36 H 0.183 0.817 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.093 0.907 42 H 0.079 0.921 43 H 0.194 0.806 44 H 0.070 0.930 45 H 0.103 0.897 46 H 0.096 0.904 47 H 0.102 0.898 48 H 0.093 0.907 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -29.021 -4.933 7.119 30.285 hybrid contribution 0.076 -1.825 -0.498 1.893 sum -28.944 -6.758 6.622 30.452 Atomic orbital electron populations 1.23162 0.77810 1.04605 1.01633 1.86104 1.21659 1.25490 1.88508 1.19716 0.92163 0.86119 0.99732 1.23056 1.00699 0.87059 1.01399 1.67557 1.11741 1.25935 1.10979 1.22895 0.88451 0.98181 0.96453 1.20721 0.94699 0.93884 1.05151 1.17532 0.86259 0.79098 0.80354 1.90828 1.64712 1.44456 1.40111 1.49595 1.09781 1.42189 1.33562 1.21329 0.95332 0.93749 0.90219 1.22184 0.95241 0.98001 0.99137 0.89498 1.21763 0.97889 1.00574 0.93397 1.23753 0.92483 1.00164 1.01871 1.20050 0.85851 0.91338 0.93600 0.91850 1.42855 1.06640 1.12744 1.76424 1.19065 0.84277 0.98617 1.35457 0.89113 1.24675 0.95429 0.97711 1.01218 1.69703 1.00223 1.36657 1.51421 0.86576 0.77034 0.86381 0.78696 1.21138 1.21743 1.20313 1.22547 0.96993 0.99049 0.95780 0.90201 1.21581 0.79387 1.01365 0.96921 1.19722 0.90935 0.95563 0.96967 1.20729 0.98836 0.93315 1.03686 0.87690 0.92285 0.92279 0.82080 0.81745 0.90838 0.91152 0.91673 0.91820 0.90655 0.92131 0.80554 0.93047 0.89706 0.90414 0.89758 0.90668 0.90507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.82 101.05 0.99 1.09 16 2 O -0.31 -2.57 9.75 -19.50 -0.19 -2.76 16 3 C 0.07 0.69 6.68 -39.13 -0.26 0.43 16 4 C 0.04 0.31 10.21 -17.30 -0.18 0.14 16 5 N -0.45 -4.74 10.34 -12.79 -0.13 -4.87 16 6 C 0.10 1.03 9.51 -17.14 -0.16 0.87 16 7 C -0.14 -1.66 5.37 -104.84 -0.56 -2.22 16 8 C 0.58 8.09 6.63 -12.32 -0.08 8.01 16 9 O -0.52 -8.99 15.82 5.32 0.08 -8.90 16 10 N -0.62 -7.84 3.41 -173.24 -0.59 -8.43 16 11 C 0.12 1.18 6.07 -4.24 -0.03 1.16 16 12 C -0.13 -1.40 2.80 -90.27 -0.25 -1.65 16 13 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 14 C -0.10 -1.12 6.72 -25.91 -0.17 -1.30 16 15 C -0.14 -2.15 6.74 -23.33 -0.16 -2.31 16 16 C 0.20 3.52 3.39 -67.71 -0.23 3.29 16 17 H 0.06 1.15 8.12 -51.93 -0.42 0.73 16 18 N -0.74 -16.68 4.92 -53.21 -0.26 -16.94 16 19 C -0.24 -6.64 10.46 -15.06 -0.16 -6.80 16 20 H 0.09 2.64 8.06 -52.48 -0.42 2.22 16 21 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 22 N -0.93 -28.91 13.97 55.49 0.78 -28.13 16 23 Si 0.88 21.90 27.74 -169.99 -4.71 17.19 16 24 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 26 H -0.28 -6.51 6.52 56.52 0.37 -6.14 16 27 C -0.12 -1.77 2.39 -90.33 -0.22 -1.99 16 28 H 0.08 1.23 7.92 -51.93 -0.41 0.82 16 29 C 0.13 1.80 6.83 -3.31 -0.02 1.78 16 30 C -0.02 -0.26 5.96 -103.76 -0.62 -0.88 16 31 C -0.11 -1.21 8.97 36.00 0.32 -0.89 16 32 H 0.10 0.25 8.14 -51.93 -0.42 -0.18 16 33 H 0.06 0.18 7.67 -51.93 -0.40 -0.22 16 34 H 0.06 0.18 7.67 -51.93 -0.40 -0.22 16 35 H 0.16 0.93 6.30 -52.49 -0.33 0.60 16 36 H 0.17 1.44 6.43 -52.49 -0.34 1.10 16 37 H 0.07 0.62 5.51 -51.93 -0.29 0.33 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.07 1.31 7.98 -51.93 -0.41 0.89 16 42 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.36 8.10 5.50 -40.82 -0.22 7.87 16 44 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 45 H 0.08 1.35 8.06 -51.93 -0.42 0.93 16 46 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 47 H 0.08 0.93 8.14 -51.92 -0.42 0.50 16 48 H 0.07 0.73 7.76 -51.93 -0.40 0.32 16 49 H 0.08 0.96 6.52 -51.93 -0.34 0.63 16 LS Contribution 387.66 15.07 5.84 5.84 Total: -1.00 -33.48 387.66 -8.42 -41.90 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -7.36 Total: 6.33 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: -1.88 Total: -1.22 kcal Atomic # 7 Polarization: -58.17 SS G_CDS: -0.21 Total: -58.38 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: -0.11 Total: -11.67 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.71 Total: 17.19 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.48 -8.42 -41.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026295015.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.545 kcal (2) G-P(sol) polarization free energy of solvation -33.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds