Wall clock time and date at job start Wed Apr 1 2020 06:36:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.33491 * 126.82905 * 2 1 4 4 N 1.20661 * 113.15629 * 180.02562 * 3 2 1 5 5 C 1.30017 * 112.29757 * 359.71787 * 4 3 2 6 6 C 1.50704 * 127.33246 * 180.29712 * 5 4 3 7 7 C 1.53008 * 117.49760 * 8.77202 * 6 5 4 8 8 C 1.52998 * 117.50224 * 300.14837 * 6 5 4 9 9 C 1.37360 * 126.82800 * 180.02562 * 2 1 3 10 10 C 1.47398 * 128.56689 * 359.95787 * 9 2 1 11 11 O 1.21614 * 119.99910 * 90.02097 * 10 9 2 12 12 N 1.34778 * 120.00244 * 270.02400 * 10 9 2 13 13 C 1.49626 * 126.06986 * 359.96177 * 12 10 9 14 14 C 1.51523 * 102.49575 * 154.38660 * 13 12 10 15 15 H 1.08996 * 111.54878 * 287.98339 * 14 13 12 16 16 C 1.51557 * 123.33756 * 151.62692 * 14 13 12 17 17 C 1.56337 * 101.81351 * 207.98035 * 16 14 13 18 18 C 1.56008 * 105.76872 * 25.44334 * 17 16 14 19 19 H 1.09004 * 110.64470 * 248.27814 * 18 17 16 20 20 N 1.46494 * 110.52557 * 125.58393 * 18 17 16 21 21 C 1.36937 * 119.99886 * 90.43594 * 20 18 17 22 22 H 1.07991 * 120.00279 * 0.02562 * 21 20 18 23 23 C 1.38818 * 119.99696 * 179.97438 * 21 20 18 24 24 N 1.31612 * 120.00424 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99779 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47136 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.47335 * 119.99919 * 25 23 21 28 28 H 1.48498 * 109.47075 * 240.00218 * 25 23 21 29 29 C 1.49707 * 103.98258 * 6.95874 * 18 17 16 30 30 H 1.08992 * 108.54952 * 76.80081 * 29 18 17 31 31 C 1.49283 * 126.07303 * 179.97438 * 12 10 9 32 32 H 1.09002 * 109.47397 * 269.97183 * 1 2 3 33 33 H 1.09002 * 109.47363 * 29.97502 * 1 2 3 34 34 H 1.08999 * 109.47349 * 149.97221 * 1 2 3 35 35 H 1.09001 * 115.54909 * 154.47170 * 6 5 4 36 36 H 1.09000 * 117.49873 * 359.97438 * 7 6 5 37 37 H 1.08993 * 117.49640 * 145.01840 * 7 6 5 38 38 H 1.09000 * 117.50000 * 214.97785 * 8 6 5 39 39 H 1.09003 * 117.49896 * 359.97438 * 8 6 5 40 40 H 1.08999 * 110.80315 * 36.13007 * 13 12 10 41 41 H 1.09006 * 110.96247 * 272.71520 * 13 12 10 42 42 H 1.09008 * 110.95958 * 89.85621 * 16 14 13 43 43 H 1.09001 * 110.96513 * 326.11536 * 16 14 13 44 44 H 1.08997 * 110.19691 * 266.36751 * 17 16 14 45 45 H 1.08999 * 110.19013 * 144.51704 * 17 16 14 46 46 H 0.97001 * 120.00136 * 270.42833 * 20 18 17 47 47 H 0.97000 * 120.00780 * 179.97438 * 24 23 21 48 48 H 1.08999 * 110.39391 * 54.78239 * 31 12 10 49 49 H 1.08991 * 110.40163 * 292.37859 * 31 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3072 1.0685 0.0000 4 7 3.4796 0.7833 -0.0005 5 6 3.6746 -0.5022 0.0050 6 6 4.9964 -1.2260 0.0125 7 6 6.2595 -0.3881 0.2209 8 6 5.9476 -0.9720 -1.1586 9 6 2.3303 -1.0995 -0.0005 10 6 1.9587 -2.5258 -0.0003 11 8 1.8051 -3.1143 -1.0534 12 7 1.7889 -3.1779 1.1670 13 6 1.9430 -2.5907 2.5346 14 6 1.0501 -3.4802 3.3757 15 1 -0.0047 -3.2933 3.1748 16 6 1.2872 -3.7435 4.8493 17 6 0.6526 -5.1612 5.0272 18 6 0.7167 -5.8339 3.6211 19 1 -0.2842 -5.9537 3.2064 20 7 1.3963 -7.1291 3.7019 21 6 0.6735 -8.2680 3.9381 22 1 -0.3975 -8.2114 4.0644 23 6 1.3175 -9.4954 4.0140 24 7 2.6227 -9.5645 3.8596 25 14 0.3315 -11.0491 4.3355 26 1 -1.1064 -10.7037 4.4707 27 1 0.5091 -11.9916 3.2018 28 1 0.8078 -11.6871 5.5890 29 6 1.5150 -4.8728 2.7963 30 1 2.5674 -4.9824 3.0578 31 6 1.4141 -4.6142 1.3251 32 1 -0.3634 -0.0005 1.0277 33 1 -0.3634 0.8902 -0.5134 34 1 -0.3634 -0.8897 -0.5143 35 1 4.9809 -2.2286 0.4400 36 1 6.1345 0.6867 0.3522 37 1 7.0752 -0.8394 0.7856 38 1 6.5583 -1.8073 -1.5013 39 1 5.6173 -0.2815 -1.9347 40 1 1.5915 -1.5591 2.5548 41 1 2.9780 -2.6520 2.8710 42 1 0.7724 -3.0059 5.4650 43 1 2.3533 -3.7623 5.0755 44 1 -0.3832 -5.0714 5.3544 45 1 1.2267 -5.7424 5.7488 46 1 2.3583 -7.1801 3.5879 47 1 3.0728 -10.4222 3.9130 48 1 2.1104 -5.2508 0.7791 49 1 0.3942 -4.7810 0.9789 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026316175.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:36:50 Heat of formation + Delta-G solvation = 81.979439 kcal Electronic energy + Delta-G solvation = -30758.842866 eV Core-core repulsion = 26690.862460 eV Total energy + Delta-G solvation = -4067.980406 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 2.98 seconds Orbital eigenvalues (eV) -45.10988 -40.58067 -38.68250 -37.75137 -35.37836 -34.02622 -33.40998 -33.09312 -30.96883 -29.83462 -28.54832 -28.17346 -25.74014 -25.12005 -24.16509 -23.17490 -22.74888 -22.53191 -20.33721 -20.05628 -19.30086 -19.13959 -18.02741 -17.73062 -17.14778 -16.61199 -16.51778 -15.79907 -15.22282 -15.12618 -14.86456 -14.51883 -14.04380 -13.98444 -13.80699 -13.63025 -13.36549 -13.14389 -12.91021 -12.71235 -12.44565 -12.32689 -11.96473 -11.92393 -11.80517 -11.60409 -11.54567 -11.48773 -11.11333 -10.87027 -10.82504 -10.72415 -10.54215 -10.19827 -10.17526 -10.13313 -9.83096 -9.78857 -9.64357 -9.57391 -8.95688 -8.74636 -7.01738 -5.81185 -3.10509 1.05533 1.59712 2.30201 2.54031 2.91342 3.40783 3.46745 3.48809 3.50188 3.65615 3.96757 4.08327 4.41297 4.50981 4.54661 4.58233 4.67185 4.76426 4.85014 4.96786 5.00870 5.08156 5.20534 5.23551 5.28005 5.32614 5.35790 5.41468 5.51654 5.52398 5.55030 5.62865 5.67886 5.75211 5.79882 5.82001 5.86043 5.91852 5.97423 6.07038 6.12864 6.28645 6.30987 6.43888 6.57399 6.73484 6.99925 7.35966 7.67426 7.97656 7.99194 8.36824 9.48511 10.04476 10.38817 11.41246 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015303 B = 0.002603 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.230767 B =10754.247196 C =11323.523770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.014 3.986 3 O 0.097 5.903 4 N -0.355 5.355 5 C 0.090 3.910 6 C -0.093 4.093 7 C -0.160 4.160 8 C -0.157 4.157 9 C -0.234 4.234 10 C 0.612 3.388 11 O -0.526 6.526 12 N -0.612 5.612 13 C 0.120 3.880 14 C -0.127 4.127 15 H 0.088 0.912 16 C -0.100 4.100 17 C -0.143 4.143 18 C 0.200 3.800 19 H 0.057 0.943 20 N -0.720 5.720 21 C -0.241 4.241 22 H 0.071 0.929 23 C -0.012 4.012 24 N -0.931 5.931 25 Si 0.905 3.095 26 H -0.280 1.280 27 H -0.292 1.292 28 H -0.292 1.292 29 C -0.120 4.120 30 H 0.075 0.925 31 C 0.135 3.865 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.128 0.872 36 H 0.102 0.898 37 H 0.105 0.895 38 H 0.106 0.894 39 H 0.097 0.903 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.060 0.940 43 H 0.066 0.934 44 H 0.055 0.945 45 H 0.074 0.926 46 H 0.384 0.616 47 H 0.255 0.745 48 H 0.078 0.922 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.030 22.901 -4.469 23.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.049 4.049 3 O 0.035 5.965 4 N -0.061 5.061 5 C -0.072 4.072 6 C -0.112 4.112 7 C -0.197 4.197 8 C -0.195 4.195 9 C -0.241 4.241 10 C 0.398 3.602 11 O -0.402 6.402 12 N -0.347 5.347 13 C -0.001 4.001 14 C -0.147 4.147 15 H 0.106 0.894 16 C -0.138 4.138 17 C -0.184 4.184 18 C 0.088 3.912 19 H 0.075 0.925 20 N -0.360 5.360 21 C -0.372 4.372 22 H 0.089 0.911 23 C -0.208 4.208 24 N -0.580 5.580 25 Si 0.737 3.263 26 H -0.205 1.205 27 H -0.219 1.219 28 H -0.219 1.219 29 C -0.140 4.140 30 H 0.094 0.906 31 C 0.015 3.985 32 H 0.114 0.886 33 H 0.109 0.891 34 H 0.113 0.887 35 H 0.146 0.854 36 H 0.120 0.880 37 H 0.124 0.876 38 H 0.125 0.875 39 H 0.115 0.885 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.079 0.921 43 H 0.085 0.915 44 H 0.074 0.926 45 H 0.093 0.907 46 H 0.218 0.782 47 H 0.065 0.935 48 H 0.097 0.903 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.552 23.528 -5.108 24.083 hybrid contribution -0.389 -1.672 0.222 1.731 sum 0.164 21.856 -4.886 22.396 Atomic orbital electron populations 1.20473 0.83095 1.05319 1.04699 1.24576 0.95987 0.85043 0.99343 1.84533 1.11060 1.32836 1.68084 1.73542 0.95851 1.16303 1.20368 1.23700 0.94229 0.88522 1.00721 1.20265 0.84814 0.99698 1.06397 1.23041 0.97011 1.00117 0.99559 1.23050 1.01120 1.03634 0.91682 1.21782 0.92644 0.95067 1.14632 1.16442 0.77206 0.83772 0.82777 1.90848 1.51146 1.67689 1.30558 1.49797 1.67868 1.11882 1.05135 1.21743 1.00087 0.96935 0.81373 1.22577 0.99790 0.95922 0.96404 0.89416 1.21863 1.01081 0.97853 0.93032 1.23802 0.99924 0.93924 1.00785 1.19936 0.95030 0.85160 0.91030 0.92526 1.42502 1.07157 1.00750 1.85600 1.19284 0.91539 0.85369 1.40984 0.91060 1.24744 0.95671 0.97701 1.02690 1.69659 1.07109 1.24435 1.56764 0.86145 0.79048 0.83729 0.77425 1.20531 1.21864 1.21892 1.22126 1.02581 0.96062 0.93219 0.90643 1.21033 1.01331 0.79489 0.96660 0.88648 0.89056 0.88677 0.85394 0.87957 0.87649 0.87515 0.88469 0.91019 0.90813 0.92143 0.91539 0.92596 0.90705 0.78165 0.93519 0.90327 0.90911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.52 10.33 36.00 0.37 -0.14 16 2 C 0.01 0.14 7.55 -34.63 -0.26 -0.12 16 3 O 0.10 1.07 11.06 18.66 0.21 1.28 16 4 N -0.35 -4.36 11.71 34.78 0.41 -3.95 16 5 C 0.09 1.11 7.08 -79.77 -0.56 0.55 16 6 C -0.09 -1.01 6.31 -91.77 -0.58 -1.59 16 7 C -0.16 -1.42 10.16 -26.72 -0.27 -1.69 16 8 C -0.16 -1.47 10.23 -26.73 -0.27 -1.74 16 9 C -0.23 -2.95 5.22 -102.90 -0.54 -3.48 16 10 C 0.61 8.97 7.66 -12.53 -0.10 8.88 16 11 O -0.53 -9.66 17.47 5.27 0.09 -9.57 16 12 N -0.61 -8.17 3.43 -172.84 -0.59 -8.76 16 13 C 0.12 1.32 6.46 -3.05 -0.02 1.30 16 14 C -0.13 -1.48 3.14 -89.45 -0.28 -1.77 16 15 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 16 C -0.10 -1.20 6.59 -25.67 -0.17 -1.37 16 17 C -0.14 -2.23 6.74 -23.33 -0.16 -2.39 16 18 C 0.20 3.59 3.45 -67.95 -0.23 3.35 16 19 H 0.06 1.05 8.09 -51.93 -0.42 0.63 16 20 N -0.72 -16.93 5.10 -53.45 -0.27 -17.20 16 21 C -0.24 -6.39 9.96 -15.06 -0.15 -6.54 16 22 H 0.07 1.85 7.83 -52.49 -0.41 1.43 16 23 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 24 N -0.93 -27.44 13.06 55.49 0.72 -26.72 16 25 Si 0.91 21.92 29.55 -169.99 -5.02 16.89 16 26 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 27 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 28 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 29 C -0.12 -1.79 2.22 -91.23 -0.20 -2.00 16 30 H 0.08 1.21 7.72 -51.93 -0.40 0.81 16 31 C 0.14 2.03 6.83 -4.12 -0.03 2.00 16 32 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.09 0.70 8.11 -51.93 -0.42 0.28 16 35 H 0.13 1.40 8.14 -51.93 -0.42 0.98 16 36 H 0.10 0.94 7.97 -51.93 -0.41 0.53 16 37 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.07 0.68 7.75 -51.93 -0.40 0.28 16 41 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 43 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 45 H 0.07 1.34 7.98 -51.93 -0.41 0.93 16 46 H 0.38 9.71 7.68 -40.82 -0.31 9.40 16 47 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 48 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 49 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 405.42 15.07 6.11 6.11 Total: -1.00 -31.97 405.42 -9.73 -41.69 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -7.83 Total: 7.41 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: -3.55 Total: -7.17 kcal Atomic # 7 Polarization: -56.90 SS G_CDS: 0.27 Total: -56.63 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: 0.30 Total: -8.29 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -31.97 -9.73 -41.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026316175.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.672 kcal (2) G-P(sol) polarization free energy of solvation -31.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.98 seconds