Wall clock time and date at job start Wed Apr 1 2020 06:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.33491 * 126.82905 * 2 1 4 4 N 1.20661 * 113.15629 * 180.02562 * 3 2 1 5 5 C 1.30017 * 112.29757 * 359.71787 * 4 3 2 6 6 C 1.50704 * 127.33246 * 180.29712 * 5 4 3 7 7 C 1.53008 * 117.49760 * 8.77202 * 6 5 4 8 8 C 1.52998 * 117.50224 * 300.14837 * 6 5 4 9 9 C 1.37360 * 126.82800 * 180.02562 * 2 1 3 10 10 C 1.47398 * 128.56689 * 359.95787 * 9 2 1 11 11 O 1.21614 * 119.99910 * 90.02097 * 10 9 2 12 12 N 1.34778 * 120.00244 * 270.02400 * 10 9 2 13 13 C 1.49626 * 126.06986 * 359.96177 * 12 10 9 14 14 C 1.51523 * 102.49575 * 154.38660 * 13 12 10 15 15 H 1.08996 * 111.54878 * 287.98339 * 14 13 12 16 16 C 1.51557 * 123.33756 * 151.62692 * 14 13 12 17 17 C 1.56337 * 101.81351 * 207.98035 * 16 14 13 18 18 C 1.56008 * 105.76872 * 25.44334 * 17 16 14 19 19 H 1.09004 * 110.64470 * 248.27814 * 18 17 16 20 20 N 1.46494 * 110.52557 * 125.58393 * 18 17 16 21 21 C 1.36937 * 119.99886 * 90.43594 * 20 18 17 22 22 H 1.07991 * 120.00279 * 0.02562 * 21 20 18 23 23 C 1.38818 * 119.99696 * 179.97438 * 21 20 18 24 24 N 1.31612 * 120.00424 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99779 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47136 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.47335 * 119.99919 * 25 23 21 28 28 H 1.48498 * 109.47075 * 240.00218 * 25 23 21 29 29 C 1.49707 * 103.98258 * 6.95874 * 18 17 16 30 30 H 1.08992 * 108.54952 * 76.80081 * 29 18 17 31 31 C 1.49283 * 126.07303 * 179.97438 * 12 10 9 32 32 H 1.09002 * 109.47397 * 269.97183 * 1 2 3 33 33 H 1.09002 * 109.47363 * 29.97502 * 1 2 3 34 34 H 1.08999 * 109.47349 * 149.97221 * 1 2 3 35 35 H 1.09001 * 115.54909 * 154.47170 * 6 5 4 36 36 H 1.09000 * 117.49873 * 359.97438 * 7 6 5 37 37 H 1.08993 * 117.49640 * 145.01840 * 7 6 5 38 38 H 1.09000 * 117.50000 * 214.97785 * 8 6 5 39 39 H 1.09003 * 117.49896 * 359.97438 * 8 6 5 40 40 H 1.08999 * 110.80315 * 36.13007 * 13 12 10 41 41 H 1.09006 * 110.96247 * 272.71520 * 13 12 10 42 42 H 1.09008 * 110.95958 * 89.85621 * 16 14 13 43 43 H 1.09001 * 110.96513 * 326.11536 * 16 14 13 44 44 H 1.08997 * 110.19691 * 266.36751 * 17 16 14 45 45 H 1.08999 * 110.19013 * 144.51704 * 17 16 14 46 46 H 0.97001 * 120.00136 * 270.42833 * 20 18 17 47 47 H 0.97000 * 120.00780 * 179.97438 * 24 23 21 48 48 H 1.08999 * 110.39391 * 54.78239 * 31 12 10 49 49 H 1.08991 * 110.40163 * 292.37859 * 31 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3072 1.0685 0.0000 4 7 3.4796 0.7833 -0.0005 5 6 3.6746 -0.5022 0.0050 6 6 4.9964 -1.2260 0.0125 7 6 6.2595 -0.3881 0.2209 8 6 5.9476 -0.9720 -1.1586 9 6 2.3303 -1.0995 -0.0005 10 6 1.9587 -2.5258 -0.0003 11 8 1.8051 -3.1143 -1.0534 12 7 1.7889 -3.1779 1.1670 13 6 1.9430 -2.5907 2.5346 14 6 1.0501 -3.4802 3.3757 15 1 -0.0047 -3.2933 3.1748 16 6 1.2872 -3.7435 4.8493 17 6 0.6526 -5.1612 5.0272 18 6 0.7167 -5.8339 3.6211 19 1 -0.2842 -5.9537 3.2064 20 7 1.3963 -7.1291 3.7019 21 6 0.6735 -8.2680 3.9381 22 1 -0.3975 -8.2114 4.0644 23 6 1.3175 -9.4954 4.0140 24 7 2.6227 -9.5645 3.8596 25 14 0.3315 -11.0491 4.3355 26 1 -1.1064 -10.7037 4.4707 27 1 0.5091 -11.9916 3.2018 28 1 0.8078 -11.6871 5.5890 29 6 1.5150 -4.8728 2.7963 30 1 2.5674 -4.9824 3.0578 31 6 1.4141 -4.6142 1.3251 32 1 -0.3634 -0.0005 1.0277 33 1 -0.3634 0.8902 -0.5134 34 1 -0.3634 -0.8897 -0.5143 35 1 4.9809 -2.2286 0.4400 36 1 6.1345 0.6867 0.3522 37 1 7.0752 -0.8394 0.7856 38 1 6.5583 -1.8073 -1.5013 39 1 5.6173 -0.2815 -1.9347 40 1 1.5915 -1.5591 2.5548 41 1 2.9780 -2.6520 2.8710 42 1 0.7724 -3.0059 5.4650 43 1 2.3533 -3.7623 5.0755 44 1 -0.3832 -5.0714 5.3544 45 1 1.2267 -5.7424 5.7488 46 1 2.3583 -7.1801 3.5879 47 1 3.0728 -10.4222 3.9130 48 1 2.1104 -5.2508 0.7791 49 1 0.3942 -4.7810 0.9789 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026316175.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:36:48 Heat of formation + Delta-G solvation = 63.741102 kcal Electronic energy + Delta-G solvation = -30759.633740 eV Core-core repulsion = 26690.862460 eV Total energy + Delta-G solvation = -4068.771280 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -45.99250 -41.74787 -39.89352 -38.53674 -36.82418 -35.16769 -34.76730 -33.92858 -32.67676 -31.03755 -29.87044 -28.91412 -27.15141 -26.18082 -25.07225 -24.88141 -23.75928 -23.38298 -21.45485 -21.06256 -20.52508 -20.12377 -19.13669 -18.90899 -18.64210 -17.74854 -17.56926 -16.73719 -16.63937 -16.24886 -16.02143 -15.63770 -15.49644 -15.38043 -14.98453 -14.44961 -14.30639 -14.12840 -14.01170 -13.84769 -13.61280 -13.19130 -13.14849 -13.09927 -13.02663 -12.70344 -12.63284 -12.56733 -12.47453 -12.35509 -12.22154 -12.07680 -11.83641 -11.61502 -11.50027 -11.36712 -11.32512 -11.02351 -10.90187 -10.63437 -10.43622 -9.90320 -8.97788 -7.92700 -5.20321 0.22722 0.69351 1.19162 1.47845 1.48751 1.56381 1.58111 2.00407 2.57334 2.72978 2.80404 2.94816 3.17902 3.41922 3.47674 3.63094 3.74321 3.82599 3.90374 3.94251 3.96980 4.02901 4.19674 4.29516 4.32054 4.39558 4.49262 4.54976 4.58674 4.59345 4.62447 4.65063 4.66533 4.69512 4.76099 4.85952 4.89579 4.95523 4.98114 4.99226 5.06735 5.10215 5.12844 5.23471 5.37582 5.50515 5.52667 5.65029 6.26239 6.29886 6.85398 7.12695 7.35919 8.12612 8.34204 9.30989 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015303 B = 0.002603 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.230767 B =10754.247196 C =11323.523770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.038 3.962 3 O 0.099 5.901 4 N -0.367 5.367 5 C 0.085 3.915 6 C -0.115 4.115 7 C -0.142 4.142 8 C -0.157 4.157 9 C -0.265 4.265 10 C 0.618 3.382 11 O -0.573 6.573 12 N -0.606 5.606 13 C 0.124 3.876 14 C -0.103 4.103 15 H 0.103 0.897 16 C -0.087 4.087 17 C -0.137 4.137 18 C 0.191 3.809 19 H 0.052 0.948 20 N -0.734 5.734 21 C -0.233 4.233 22 H 0.077 0.923 23 C -0.077 4.077 24 N -0.971 5.971 25 Si 0.967 3.033 26 H -0.264 1.264 27 H -0.298 1.298 28 H -0.295 1.295 29 C -0.122 4.122 30 H 0.062 0.938 31 C 0.138 3.862 32 H 0.122 0.878 33 H 0.116 0.884 34 H 0.086 0.914 35 H 0.121 0.879 36 H 0.100 0.900 37 H 0.123 0.877 38 H 0.118 0.882 39 H 0.091 0.909 40 H 0.099 0.901 41 H 0.078 0.922 42 H 0.093 0.907 43 H 0.066 0.934 44 H 0.070 0.930 45 H 0.046 0.954 46 H 0.371 0.629 47 H 0.249 0.751 48 H 0.051 0.949 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.488 25.640 -3.469 25.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.026 4.026 3 O 0.039 5.961 4 N -0.074 5.074 5 C -0.077 4.077 6 C -0.135 4.135 7 C -0.179 4.179 8 C -0.195 4.195 9 C -0.272 4.272 10 C 0.405 3.595 11 O -0.453 6.453 12 N -0.339 5.339 13 C 0.003 3.997 14 C -0.122 4.122 15 H 0.121 0.879 16 C -0.125 4.125 17 C -0.177 4.177 18 C 0.082 3.918 19 H 0.070 0.930 20 N -0.373 5.373 21 C -0.365 4.365 22 H 0.095 0.905 23 C -0.269 4.269 24 N -0.622 5.622 25 Si 0.797 3.203 26 H -0.189 1.189 27 H -0.226 1.226 28 H -0.222 1.222 29 C -0.142 4.142 30 H 0.080 0.920 31 C 0.017 3.983 32 H 0.140 0.860 33 H 0.135 0.865 34 H 0.105 0.895 35 H 0.139 0.861 36 H 0.118 0.882 37 H 0.141 0.859 38 H 0.136 0.864 39 H 0.110 0.890 40 H 0.117 0.883 41 H 0.096 0.904 42 H 0.112 0.888 43 H 0.085 0.915 44 H 0.088 0.912 45 H 0.065 0.935 46 H 0.203 0.797 47 H 0.058 0.942 48 H 0.070 0.930 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.949 26.338 -4.072 26.668 hybrid contribution 0.006 -2.448 -0.120 2.451 sum -0.943 23.890 -4.192 24.273 Atomic orbital electron populations 1.20729 0.80287 1.06143 1.06563 1.25169 0.97203 0.83907 0.96294 1.84523 1.10859 1.32909 1.67833 1.73532 0.96468 1.16148 1.21245 1.23909 0.94659 0.88660 1.00439 1.20352 0.85272 0.99841 1.07986 1.23090 0.96119 0.99756 0.98982 1.23118 1.00664 1.03981 0.91694 1.21590 0.93526 0.94258 1.17855 1.16661 0.76160 0.84461 0.82182 1.90816 1.53287 1.68951 1.32234 1.49766 1.67064 1.11020 1.06056 1.21881 1.00401 0.97961 0.79428 1.22545 1.00725 0.93044 0.95919 0.87902 1.21786 1.01258 0.95966 0.93492 1.23591 1.00755 0.95601 0.97788 1.20211 0.94634 0.83690 0.93296 0.92997 1.42712 1.06633 1.02241 1.85741 1.19663 0.91952 0.86387 1.38457 0.90469 1.25500 0.96594 1.00696 1.04130 1.69811 1.08654 1.24515 1.59198 0.85159 0.78520 0.80080 0.76556 1.18864 1.22570 1.22250 1.21877 1.01330 0.97770 0.93200 0.91978 1.20848 1.00538 0.80485 0.96422 0.86027 0.86529 0.89504 0.86091 0.88181 0.85854 0.86373 0.89019 0.88254 0.90392 0.88809 0.91506 0.91173 0.93478 0.79675 0.94235 0.93007 0.91003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.78 10.33 71.24 0.74 -0.05 16 2 C 0.04 0.69 7.55 25.48 0.19 0.88 16 3 O 0.10 1.99 11.06 77.00 0.85 2.84 16 4 N -0.37 -8.51 11.71 -44.78 -0.52 -9.04 16 5 C 0.08 2.02 7.08 45.16 0.32 2.34 16 6 C -0.12 -2.47 6.31 -11.54 -0.07 -2.54 16 7 C -0.14 -2.34 10.16 30.60 0.31 -2.03 16 8 C -0.16 -2.85 10.23 30.60 0.31 -2.54 16 9 C -0.26 -6.37 5.22 -18.75 -0.10 -6.47 16 10 C 0.62 17.98 7.66 86.65 0.66 18.64 16 11 O -0.57 -21.64 17.47 -4.08 -0.07 -21.71 16 12 N -0.61 -15.70 3.43 -819.00 -2.81 -18.50 16 13 C 0.12 2.38 6.46 85.29 0.55 2.93 16 14 C -0.10 -2.09 3.14 -10.04 -0.03 -2.12 16 15 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 16 C -0.09 -1.79 6.59 31.28 0.21 -1.58 16 17 C -0.14 -4.04 6.74 32.80 0.22 -3.81 16 18 C 0.19 6.80 3.45 44.98 0.16 6.95 16 19 H 0.05 1.89 8.09 -2.39 -0.02 1.87 16 20 N -0.73 -35.34 5.10 -323.01 -1.65 -36.98 16 21 C -0.23 -12.50 9.96 84.03 0.84 -11.66 16 22 H 0.08 3.97 7.83 -2.92 -0.02 3.95 16 23 C -0.08 -4.37 5.50 84.86 0.47 -3.90 16 24 N -0.97 -59.02 13.06 21.65 0.28 -58.74 16 25 Si 0.97 45.75 29.55 68.60 2.03 47.78 16 26 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 27 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 28 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 29 C -0.12 -3.60 2.22 -11.19 -0.02 -3.63 16 30 H 0.06 2.02 7.72 -2.39 -0.02 2.01 16 31 C 0.14 4.21 6.83 84.79 0.58 4.79 16 32 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.09 1.07 8.11 -2.39 -0.02 1.06 16 35 H 0.12 2.69 8.14 -2.39 -0.02 2.67 16 36 H 0.10 1.71 7.97 -2.39 -0.02 1.69 16 37 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.10 1.45 7.75 -2.39 -0.02 1.44 16 41 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 42 H 0.09 1.42 8.14 -2.38 -0.02 1.41 16 43 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 45 H 0.05 1.67 7.98 -2.39 -0.02 1.65 16 46 H 0.37 19.55 7.68 -92.71 -0.71 18.84 16 47 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 48 H 0.05 1.83 8.14 -2.39 -0.02 1.82 16 49 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -72.27 405.42 3.69 -68.58 By element: Atomic # 1 Polarization: 29.32 SS G_CDS: 0.25 Total: 29.57 kcal Atomic # 6 Polarization: -9.12 SS G_CDS: 5.32 Total: -3.79 kcal Atomic # 7 Polarization: -118.56 SS G_CDS: -4.69 Total: -123.25 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: 0.78 Total: -18.88 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -72.27 3.69 -68.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026316175.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.323 kcal (2) G-P(sol) polarization free energy of solvation -72.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds