Wall clock time and date at job start Wed Apr 1 2020 06:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.33498 * 126.82450 * 2 1 4 4 N 1.20658 * 113.15754 * 180.30273 * 3 2 1 5 5 C 1.30016 * 112.30014 * 359.75621 * 4 3 2 6 6 C 1.50700 * 127.33385 * 180.02562 * 5 4 3 7 7 C 1.52992 * 117.50025 * 8.74120 * 6 5 4 8 8 C 1.52992 * 117.49752 * 300.08282 * 6 5 4 9 9 C 1.37358 * 126.83408 * 179.89440 * 2 1 3 10 10 C 1.47391 * 128.56404 * 359.97438 * 9 2 1 11 11 O 1.21609 * 120.00365 * 269.67762 * 10 9 2 12 12 N 1.34782 * 119.99904 * 89.67604 * 10 9 2 13 13 C 1.49211 * 126.05620 * 0.02562 * 12 10 9 14 14 C 1.50357 * 104.86086 * 172.91683 * 13 12 10 15 15 H 1.09007 * 109.73350 * 279.05390 * 14 13 12 16 16 C 1.51002 * 125.54214 * 144.30394 * 14 13 12 17 17 C 1.56405 * 101.62597 * 203.97728 * 16 14 13 18 18 C 1.56041 * 105.73942 * 25.02346 * 17 16 14 19 19 H 1.09003 * 110.49085 * 126.20755 * 18 17 16 20 20 N 1.46501 * 110.60344 * 248.80990 * 18 17 16 21 21 C 1.36944 * 119.99946 * 269.81088 * 20 18 17 22 22 H 1.08001 * 119.99748 * 0.02562 * 21 20 18 23 23 C 1.38812 * 119.99730 * 179.97438 * 21 20 18 24 24 N 1.31617 * 119.99560 * 180.02562 * 23 21 20 25 25 Si 1.86798 * 120.00054 * 0.02562 * 23 21 20 26 26 H 1.48497 * 109.46920 * 90.00011 * 25 23 21 27 27 H 1.48497 * 109.46884 * 209.99855 * 25 23 21 28 28 H 1.48495 * 109.47494 * 330.00158 * 25 23 21 29 29 C 1.50288 * 104.16751 * 7.53760 * 18 17 16 30 30 H 1.08999 * 109.98993 * 80.47268 * 29 18 17 31 31 C 1.49691 * 126.05896 * 180.02562 * 12 10 9 32 32 H 1.08999 * 109.47184 * 270.09711 * 1 2 3 33 33 H 1.08994 * 109.47726 * 30.10679 * 1 2 3 34 34 H 1.09002 * 109.46584 * 150.10739 * 1 2 3 35 35 H 1.08998 * 115.54615 * 154.41984 * 6 5 4 36 36 H 1.09000 * 117.50081 * 0.02562 * 7 6 5 37 37 H 1.09004 * 117.49966 * 145.02113 * 7 6 5 38 38 H 1.09005 * 117.50148 * 214.98541 * 8 6 5 39 39 H 1.09011 * 117.49989 * 359.97438 * 8 6 5 40 40 H 1.09003 * 110.36638 * 54.06951 * 13 12 10 41 41 H 1.08997 * 110.36433 * 291.76095 * 13 12 10 42 42 H 1.09002 * 111.00143 * 322.07237 * 16 14 13 43 43 H 1.09002 * 111.00485 * 85.88054 * 16 14 13 44 44 H 1.08996 * 110.18646 * 144.11917 * 17 16 14 45 45 H 1.09005 * 110.18321 * 265.95463 * 17 16 14 46 46 H 0.96999 * 119.99967 * 89.81076 * 20 18 17 47 47 H 0.97003 * 119.99511 * 179.97438 * 24 23 21 48 48 H 1.09000 * 110.84663 * 36.68725 * 31 12 10 49 49 H 1.09008 * 111.02048 * 273.15434 * 31 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3072 1.0686 0.0000 4 7 3.4796 0.7835 -0.0059 5 6 3.6747 -0.5019 -0.0056 6 6 4.9966 -1.2256 -0.0113 7 6 6.2613 -0.3882 0.1881 8 6 5.9372 -0.9692 -1.1904 9 6 2.3305 -1.0994 0.0020 10 6 1.9589 -2.5257 0.0052 11 8 1.8117 -3.1134 1.0596 12 7 1.7822 -3.1786 -1.1606 13 6 1.9274 -2.5937 -2.5256 14 6 1.8023 -3.7635 -3.4618 15 1 2.7539 -4.2921 -3.5196 16 6 1.1428 -3.7343 -4.8199 17 6 0.7541 -5.2368 -5.0139 18 6 0.6243 -5.8295 -3.5762 19 1 -0.3470 -6.3070 -3.4467 20 7 1.7033 -6.7848 -3.3130 21 6 1.5315 -8.1107 -3.6096 22 1 0.6006 -8.4519 -4.0380 23 6 2.5541 -9.0157 -3.3607 24 7 2.3891 -10.2899 -3.6463 25 14 4.1643 -8.4252 -2.6206 26 1 4.0817 -8.4908 -1.1393 27 1 5.2736 -9.2919 -3.0933 28 1 4.4178 -7.0236 -3.0406 29 6 0.7476 -4.6345 -2.6732 30 1 -0.2047 -4.1069 -2.6212 31 6 1.4055 -4.6190 -1.3155 32 1 -0.3633 0.0017 1.0276 33 1 -0.3634 0.8889 -0.5154 34 1 -0.3632 -0.8910 -0.5122 35 1 4.9849 -2.2290 0.4143 36 1 6.1374 0.6862 0.3238 37 1 7.0821 -0.8407 0.7447 38 1 6.5448 -1.8038 -1.5403 39 1 5.5998 -0.2773 -1.9623 40 1 2.9047 -2.1234 -2.6348 41 1 1.1344 -1.8702 -2.7146 42 1 0.2567 -3.0997 -4.8102 43 1 1.8447 -3.4100 -5.5882 44 1 -0.1969 -5.3143 -5.5407 45 1 1.5349 -5.7589 -5.5671 46 1 2.5395 -6.4782 -2.9287 47 1 3.1039 -10.9223 -3.4727 48 1 0.7018 -4.9215 -0.5399 49 1 2.2890 -5.2575 -1.3056 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026316176.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:36:57 Heat of formation + Delta-G solvation = 86.727899 kcal Electronic energy + Delta-G solvation = -31360.372532 eV Core-core repulsion = 27292.598035 eV Total energy + Delta-G solvation = -4067.774498 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 2.94 seconds Orbital eigenvalues (eV) -45.12531 -40.68703 -38.75663 -37.77219 -35.41781 -34.03627 -33.41765 -33.11048 -31.19579 -29.85655 -28.93350 -28.20367 -25.95436 -25.20632 -24.19864 -23.05775 -22.76338 -22.54748 -20.20873 -20.08873 -19.26947 -19.11217 -18.08385 -17.91332 -17.63245 -16.75986 -16.32161 -15.73442 -15.46888 -15.06481 -14.64737 -14.61907 -14.34626 -14.03071 -13.88049 -13.64439 -13.55736 -13.14481 -12.87338 -12.69775 -12.51378 -12.34931 -12.09758 -11.99680 -11.94312 -11.82396 -11.54665 -11.48645 -11.19366 -10.97686 -10.79441 -10.74156 -10.54195 -10.44872 -10.20223 -10.18320 -9.80034 -9.78947 -9.62454 -9.60599 -8.99440 -8.77351 -7.33701 -5.82081 -3.18190 1.04161 1.57759 2.26971 2.52399 2.89301 3.31710 3.35473 3.41958 3.48113 3.63221 3.93430 4.02004 4.40914 4.49301 4.53849 4.56259 4.66082 4.72901 4.78303 4.96801 5.00213 5.04606 5.08196 5.19915 5.27389 5.30612 5.36014 5.39363 5.40918 5.47359 5.49999 5.52453 5.59712 5.61582 5.73552 5.76150 5.78187 5.81620 5.93383 6.04674 6.08020 6.19065 6.24199 6.32405 6.43481 6.64206 6.88012 7.33353 7.94053 7.95997 7.96067 8.37109 9.14535 9.87084 10.05718 11.36231 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012427 B = 0.003450 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.619979 B = 8112.903504 C = 9065.207401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.015 3.985 3 O 0.097 5.903 4 N -0.354 5.354 5 C 0.090 3.910 6 C -0.094 4.094 7 C -0.160 4.160 8 C -0.157 4.157 9 C -0.235 4.235 10 C 0.613 3.387 11 O -0.526 6.526 12 N -0.613 5.613 13 C 0.124 3.876 14 C -0.129 4.129 15 H 0.085 0.915 16 C -0.095 4.095 17 C -0.144 4.144 18 C 0.201 3.799 19 H 0.067 0.933 20 N -0.742 5.742 21 C -0.245 4.245 22 H 0.092 0.908 23 C 0.008 3.992 24 N -0.932 5.932 25 Si 0.878 3.122 26 H -0.283 1.283 27 H -0.290 1.290 28 H -0.279 1.279 29 C -0.123 4.123 30 H 0.081 0.919 31 C 0.130 3.870 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.128 0.872 36 H 0.102 0.898 37 H 0.104 0.896 38 H 0.107 0.893 39 H 0.098 0.902 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.058 0.942 45 H 0.077 0.923 46 H 0.360 0.640 47 H 0.260 0.740 48 H 0.084 0.916 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.091 24.371 2.980 24.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.049 4.049 3 O 0.035 5.965 4 N -0.060 5.060 5 C -0.072 4.072 6 C -0.113 4.113 7 C -0.197 4.197 8 C -0.195 4.195 9 C -0.242 4.242 10 C 0.399 3.601 11 O -0.403 6.403 12 N -0.347 5.347 13 C 0.002 3.998 14 C -0.148 4.148 15 H 0.104 0.896 16 C -0.134 4.134 17 C -0.185 4.185 18 C 0.090 3.910 19 H 0.085 0.915 20 N -0.385 5.385 21 C -0.375 4.375 22 H 0.110 0.890 23 C -0.188 4.188 24 N -0.579 5.579 25 Si 0.708 3.292 26 H -0.209 1.209 27 H -0.217 1.217 28 H -0.205 1.205 29 C -0.143 4.143 30 H 0.100 0.900 31 C 0.009 3.991 32 H 0.114 0.886 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.146 0.854 36 H 0.121 0.879 37 H 0.123 0.877 38 H 0.125 0.875 39 H 0.116 0.884 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.077 0.923 45 H 0.096 0.904 46 H 0.194 0.806 47 H 0.070 0.930 48 H 0.103 0.897 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.471 24.915 3.573 25.174 hybrid contribution 1.049 -0.450 0.501 1.247 sum 0.578 24.465 4.075 24.809 Atomic orbital electron populations 1.20459 0.83092 1.05047 1.04876 1.24570 0.95980 0.85029 0.99277 1.84531 1.11057 1.32820 1.68089 1.73540 0.95851 1.16283 1.20339 1.23689 0.94202 0.88520 1.00759 1.20285 0.84941 0.99827 1.06286 1.23033 0.96933 1.00136 0.99595 1.23075 1.01210 1.03652 0.91531 1.21780 0.92671 0.95054 1.14698 1.16439 0.77141 0.83759 0.82788 1.90849 1.51209 1.67834 1.30376 1.49786 1.67917 1.11952 1.05088 1.21263 1.01391 0.95904 0.81256 1.22247 1.00585 0.96196 0.95791 0.89629 1.21720 0.99226 0.98162 0.94243 1.23836 1.01480 0.93267 0.99915 1.20118 0.93226 0.87381 0.90293 0.91516 1.42799 1.14098 1.05135 1.76468 1.19080 1.01338 0.81761 1.35294 0.89019 1.24645 0.97764 0.95228 1.01138 1.69690 1.33325 1.01296 1.53620 0.86661 0.85171 0.77735 0.79606 1.20915 1.21664 1.20494 1.22527 0.98317 0.99564 0.93896 0.90031 1.21492 1.00346 0.79712 0.97504 0.88603 0.89032 0.88849 0.85390 0.87935 0.87726 0.87487 0.88375 0.91256 0.91353 0.91781 0.91912 0.92271 0.90433 0.80621 0.93006 0.89741 0.90394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.50 10.33 36.01 0.37 -0.13 16 2 C 0.01 0.15 7.55 -34.63 -0.26 -0.11 16 3 O 0.10 1.08 11.06 18.64 0.21 1.29 16 4 N -0.35 -4.40 11.71 34.78 0.41 -3.99 16 5 C 0.09 1.13 7.08 -79.76 -0.56 0.57 16 6 C -0.09 -1.06 6.31 -91.78 -0.58 -1.64 16 7 C -0.16 -1.47 10.16 -26.70 -0.27 -1.74 16 8 C -0.16 -1.45 10.24 -26.70 -0.27 -1.73 16 9 C -0.23 -3.00 5.46 -102.89 -0.56 -3.56 16 10 C 0.61 9.11 7.66 -12.53 -0.10 9.02 16 11 O -0.53 -9.76 17.44 5.27 0.09 -9.67 16 12 N -0.61 -8.33 3.43 -172.85 -0.59 -8.92 16 13 C 0.12 1.38 6.39 -3.86 -0.02 1.36 16 14 C -0.13 -1.61 2.73 -90.26 -0.25 -1.86 16 15 H 0.09 1.26 7.66 -51.93 -0.40 0.86 16 16 C -0.10 -1.09 6.72 -25.90 -0.17 -1.27 16 17 C -0.14 -2.12 6.74 -23.27 -0.16 -2.28 16 18 C 0.20 3.40 3.46 -67.65 -0.23 3.17 16 19 H 0.07 1.18 8.09 -51.93 -0.42 0.76 16 20 N -0.74 -16.10 4.62 -53.15 -0.25 -16.35 16 21 C -0.24 -6.53 10.44 -15.06 -0.16 -6.69 16 22 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 23 C 0.01 0.23 5.50 -17.43 -0.10 0.14 16 24 N -0.93 -28.60 13.97 55.49 0.78 -27.82 16 25 Si 0.88 21.61 27.74 -169.99 -4.71 16.90 16 26 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 27 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 28 H -0.28 -6.40 6.52 56.52 0.37 -6.03 16 29 C -0.12 -1.71 2.58 -90.36 -0.23 -1.94 16 30 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 31 C 0.13 1.98 6.52 -3.33 -0.02 1.96 16 32 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.09 0.62 8.11 -51.93 -0.42 0.20 16 35 H 0.13 1.51 8.14 -51.93 -0.42 1.09 16 36 H 0.10 0.98 7.97 -51.93 -0.41 0.56 16 37 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.11 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.10 0.91 8.14 -51.92 -0.42 0.48 16 40 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 45 H 0.08 1.33 7.99 -51.93 -0.41 0.92 16 46 H 0.36 7.82 4.06 -40.82 -0.17 7.65 16 47 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 48 H 0.08 1.33 8.10 -51.93 -0.42 0.91 16 49 H 0.08 1.34 6.96 -51.92 -0.36 0.98 16 LS Contribution 399.58 15.07 6.02 6.02 Total: -1.00 -32.72 399.58 -9.31 -42.03 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -7.68 Total: 7.25 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: -3.58 Total: -6.73 kcal Atomic # 7 Polarization: -57.43 SS G_CDS: 0.34 Total: -57.08 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: 0.30 Total: -8.38 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.71 Total: 16.90 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.72 -9.31 -42.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026316176.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.753 kcal (2) G-P(sol) polarization free energy of solvation -32.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.94 seconds