Wall clock time and date at job start Wed Apr 1 2020 06:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.33498 * 126.82450 * 2 1 4 4 N 1.20658 * 113.15754 * 180.30273 * 3 2 1 5 5 C 1.30016 * 112.30014 * 359.75621 * 4 3 2 6 6 C 1.50700 * 127.33385 * 180.02562 * 5 4 3 7 7 C 1.52992 * 117.50025 * 8.74120 * 6 5 4 8 8 C 1.52992 * 117.49752 * 300.08282 * 6 5 4 9 9 C 1.37358 * 126.83408 * 179.89440 * 2 1 3 10 10 C 1.47391 * 128.56404 * 359.97438 * 9 2 1 11 11 O 1.21609 * 120.00365 * 269.67762 * 10 9 2 12 12 N 1.34782 * 119.99904 * 89.67604 * 10 9 2 13 13 C 1.49211 * 126.05620 * 0.02562 * 12 10 9 14 14 C 1.50357 * 104.86086 * 172.91683 * 13 12 10 15 15 H 1.09007 * 109.73350 * 279.05390 * 14 13 12 16 16 C 1.51002 * 125.54214 * 144.30394 * 14 13 12 17 17 C 1.56405 * 101.62597 * 203.97728 * 16 14 13 18 18 C 1.56041 * 105.73942 * 25.02346 * 17 16 14 19 19 H 1.09003 * 110.49085 * 126.20755 * 18 17 16 20 20 N 1.46501 * 110.60344 * 248.80990 * 18 17 16 21 21 C 1.36944 * 119.99946 * 269.81088 * 20 18 17 22 22 H 1.08001 * 119.99748 * 0.02562 * 21 20 18 23 23 C 1.38812 * 119.99730 * 179.97438 * 21 20 18 24 24 N 1.31617 * 119.99560 * 180.02562 * 23 21 20 25 25 Si 1.86798 * 120.00054 * 0.02562 * 23 21 20 26 26 H 1.48497 * 109.46920 * 90.00011 * 25 23 21 27 27 H 1.48497 * 109.46884 * 209.99855 * 25 23 21 28 28 H 1.48495 * 109.47494 * 330.00158 * 25 23 21 29 29 C 1.50288 * 104.16751 * 7.53760 * 18 17 16 30 30 H 1.08999 * 109.98993 * 80.47268 * 29 18 17 31 31 C 1.49691 * 126.05896 * 180.02562 * 12 10 9 32 32 H 1.08999 * 109.47184 * 270.09711 * 1 2 3 33 33 H 1.08994 * 109.47726 * 30.10679 * 1 2 3 34 34 H 1.09002 * 109.46584 * 150.10739 * 1 2 3 35 35 H 1.08998 * 115.54615 * 154.41984 * 6 5 4 36 36 H 1.09000 * 117.50081 * 0.02562 * 7 6 5 37 37 H 1.09004 * 117.49966 * 145.02113 * 7 6 5 38 38 H 1.09005 * 117.50148 * 214.98541 * 8 6 5 39 39 H 1.09011 * 117.49989 * 359.97438 * 8 6 5 40 40 H 1.09003 * 110.36638 * 54.06951 * 13 12 10 41 41 H 1.08997 * 110.36433 * 291.76095 * 13 12 10 42 42 H 1.09002 * 111.00143 * 322.07237 * 16 14 13 43 43 H 1.09002 * 111.00485 * 85.88054 * 16 14 13 44 44 H 1.08996 * 110.18646 * 144.11917 * 17 16 14 45 45 H 1.09005 * 110.18321 * 265.95463 * 17 16 14 46 46 H 0.96999 * 119.99967 * 89.81076 * 20 18 17 47 47 H 0.97003 * 119.99511 * 179.97438 * 24 23 21 48 48 H 1.09000 * 110.84663 * 36.68725 * 31 12 10 49 49 H 1.09008 * 111.02048 * 273.15434 * 31 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3072 1.0686 0.0000 4 7 3.4796 0.7835 -0.0059 5 6 3.6747 -0.5019 -0.0056 6 6 4.9966 -1.2256 -0.0113 7 6 6.2613 -0.3882 0.1881 8 6 5.9372 -0.9692 -1.1904 9 6 2.3305 -1.0994 0.0020 10 6 1.9589 -2.5257 0.0052 11 8 1.8117 -3.1134 1.0596 12 7 1.7822 -3.1786 -1.1606 13 6 1.9274 -2.5937 -2.5256 14 6 1.8023 -3.7635 -3.4618 15 1 2.7539 -4.2921 -3.5196 16 6 1.1428 -3.7343 -4.8199 17 6 0.7541 -5.2368 -5.0139 18 6 0.6243 -5.8295 -3.5762 19 1 -0.3470 -6.3070 -3.4467 20 7 1.7033 -6.7848 -3.3130 21 6 1.5315 -8.1107 -3.6096 22 1 0.6006 -8.4519 -4.0380 23 6 2.5541 -9.0157 -3.3607 24 7 2.3891 -10.2899 -3.6463 25 14 4.1643 -8.4252 -2.6206 26 1 4.0817 -8.4908 -1.1393 27 1 5.2736 -9.2919 -3.0933 28 1 4.4178 -7.0236 -3.0406 29 6 0.7476 -4.6345 -2.6732 30 1 -0.2047 -4.1069 -2.6212 31 6 1.4055 -4.6190 -1.3155 32 1 -0.3633 0.0017 1.0276 33 1 -0.3634 0.8889 -0.5154 34 1 -0.3632 -0.8910 -0.5122 35 1 4.9849 -2.2290 0.4143 36 1 6.1374 0.6862 0.3238 37 1 7.0821 -0.8407 0.7447 38 1 6.5448 -1.8038 -1.5403 39 1 5.5998 -0.2773 -1.9623 40 1 2.9047 -2.1234 -2.6348 41 1 1.1344 -1.8702 -2.7146 42 1 0.2567 -3.0997 -4.8102 43 1 1.8447 -3.4100 -5.5882 44 1 -0.1969 -5.3143 -5.5407 45 1 1.5349 -5.7589 -5.5671 46 1 2.5395 -6.4782 -2.9287 47 1 3.1039 -10.9223 -3.4727 48 1 0.7018 -4.9215 -0.5399 49 1 2.2890 -5.2575 -1.3056 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026316176.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:36:55 Heat of formation + Delta-G solvation = 67.409862 kcal Electronic energy + Delta-G solvation = -31361.210225 eV Core-core repulsion = 27292.598035 eV Total energy + Delta-G solvation = -4068.612191 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 2.57 seconds Orbital eigenvalues (eV) -46.00198 -41.83165 -39.95056 -38.55732 -36.82505 -35.16731 -34.77731 -33.93797 -33.01586 -31.02812 -30.21337 -28.92243 -27.24998 -26.19437 -25.09128 -24.81122 -23.77923 -23.39911 -21.23815 -21.04424 -20.57055 -20.14436 -19.78332 -18.89337 -18.65516 -17.70780 -17.59464 -16.74845 -16.61621 -16.36561 -16.01564 -15.62666 -15.53773 -15.41736 -15.02291 -14.62026 -14.42557 -14.16243 -14.05311 -13.89259 -13.66668 -13.51614 -13.34468 -13.11956 -13.01280 -12.78150 -12.66581 -12.57412 -12.39718 -12.32004 -12.23849 -11.95651 -11.94900 -11.64710 -11.51858 -11.45210 -11.34935 -11.00852 -10.92816 -10.64946 -10.45527 -9.91352 -9.28356 -8.02147 -5.33258 0.22152 0.67902 1.16914 1.32026 1.35979 1.41596 1.55944 1.99734 2.45757 2.69752 2.79706 2.91074 3.15333 3.30317 3.48338 3.58708 3.71415 3.77652 3.82129 3.89260 3.93004 3.96378 4.13871 4.24147 4.30854 4.36961 4.41455 4.53823 4.56329 4.57669 4.61359 4.62651 4.67669 4.68804 4.80357 4.84167 4.87151 4.94649 4.97124 4.98375 5.06259 5.08495 5.12728 5.21132 5.34129 5.43240 5.62232 5.82222 6.23335 6.25197 6.83359 7.09331 7.11694 7.86968 8.03186 9.19822 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012427 B = 0.003450 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.619979 B = 8112.903504 C = 9065.207401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.039 3.961 3 O 0.099 5.901 4 N -0.367 5.367 5 C 0.084 3.916 6 C -0.119 4.119 7 C -0.149 4.149 8 C -0.145 4.145 9 C -0.266 4.266 10 C 0.618 3.382 11 O -0.574 6.574 12 N -0.607 5.607 13 C 0.128 3.872 14 C -0.116 4.116 15 H 0.060 0.940 16 C -0.080 4.080 17 C -0.140 4.140 18 C 0.188 3.812 19 H 0.056 0.944 20 N -0.746 5.746 21 C -0.219 4.219 22 H 0.064 0.936 23 C -0.060 4.060 24 N -0.984 5.984 25 Si 0.939 3.061 26 H -0.286 1.286 27 H -0.296 1.296 28 H -0.254 1.254 29 C -0.119 4.119 30 H 0.111 0.889 31 C 0.129 3.871 32 H 0.106 0.894 33 H 0.122 0.878 34 H 0.096 0.904 35 H 0.114 0.886 36 H 0.100 0.900 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.100 0.900 40 H 0.076 0.924 41 H 0.101 0.899 42 H 0.097 0.903 43 H 0.077 0.923 44 H 0.074 0.926 45 H 0.048 0.952 46 H 0.362 0.638 47 H 0.256 0.744 48 H 0.073 0.927 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.474 28.370 2.258 28.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.024 4.024 3 O 0.039 5.961 4 N -0.073 5.073 5 C -0.077 4.077 6 C -0.138 4.138 7 C -0.187 4.187 8 C -0.183 4.183 9 C -0.273 4.273 10 C 0.405 3.595 11 O -0.453 6.453 12 N -0.340 5.340 13 C 0.008 3.992 14 C -0.135 4.135 15 H 0.079 0.921 16 C -0.118 4.118 17 C -0.180 4.180 18 C 0.079 3.921 19 H 0.074 0.926 20 N -0.389 5.389 21 C -0.350 4.350 22 H 0.081 0.919 23 C -0.251 4.251 24 N -0.635 5.635 25 Si 0.768 3.232 26 H -0.213 1.213 27 H -0.223 1.223 28 H -0.179 1.179 29 C -0.139 4.139 30 H 0.129 0.871 31 C 0.007 3.993 32 H 0.124 0.876 33 H 0.141 0.859 34 H 0.115 0.885 35 H 0.132 0.868 36 H 0.118 0.882 37 H 0.137 0.863 38 H 0.135 0.865 39 H 0.119 0.881 40 H 0.094 0.906 41 H 0.119 0.881 42 H 0.115 0.885 43 H 0.095 0.905 44 H 0.093 0.907 45 H 0.067 0.933 46 H 0.195 0.805 47 H 0.065 0.935 48 H 0.092 0.908 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.875 29.006 2.812 29.155 hybrid contribution 1.029 -1.677 0.723 2.096 sum 0.154 27.329 3.535 27.558 Atomic orbital electron populations 1.20726 0.80214 1.06716 1.05997 1.25176 0.97217 0.83850 0.96187 1.84521 1.10856 1.32933 1.67826 1.73531 0.96493 1.16101 1.21214 1.23882 0.94608 0.88679 1.00538 1.20318 0.85490 0.99606 1.08363 1.23094 0.96073 0.99772 0.99722 1.23131 1.00055 1.03800 0.91265 1.21601 0.93528 0.94295 1.17899 1.16656 0.76125 0.84446 0.82226 1.90817 1.53362 1.69094 1.32073 1.49772 1.67077 1.11130 1.06009 1.21392 1.03110 0.95637 0.79072 1.22191 0.98842 0.96045 0.96423 0.92131 1.21666 1.00747 0.95751 0.93596 1.23655 1.01452 0.95500 0.97391 1.20423 0.91119 0.87611 0.92930 0.92620 1.42813 1.15504 1.04090 1.76503 1.19076 0.99662 0.83900 1.32374 0.91853 1.25335 1.01401 0.95352 1.03044 1.69855 1.34407 1.02730 1.56486 0.85641 0.80925 0.78332 0.78291 1.21311 1.22319 1.17881 1.22365 1.00227 0.98448 0.92838 0.87062 1.21338 0.99160 0.80650 0.98136 0.87615 0.85921 0.88507 0.86801 0.88195 0.86276 0.86465 0.88124 0.90558 0.88096 0.88472 0.90482 0.90733 0.93292 0.80480 0.93529 0.90807 0.92970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.73 10.33 71.24 0.74 0.00 16 2 C 0.04 0.70 7.55 25.48 0.19 0.90 16 3 O 0.10 1.97 11.06 76.94 0.85 2.82 16 4 N -0.37 -8.46 11.71 -44.78 -0.52 -8.98 16 5 C 0.08 2.02 7.08 45.16 0.32 2.33 16 6 C -0.12 -2.57 6.31 -11.55 -0.07 -2.64 16 7 C -0.15 -2.53 10.16 30.61 0.31 -2.22 16 8 C -0.14 -2.42 10.24 30.61 0.31 -2.11 16 9 C -0.27 -6.36 5.46 -18.75 -0.10 -6.46 16 10 C 0.62 17.84 7.66 86.65 0.66 18.50 16 11 O -0.57 -21.53 17.44 -4.06 -0.07 -21.60 16 12 N -0.61 -15.48 3.43 -819.04 -2.81 -18.29 16 13 C 0.13 2.41 6.39 85.00 0.54 2.95 16 14 C -0.12 -2.53 2.73 -10.56 -0.03 -2.55 16 15 H 0.06 1.65 7.66 -2.38 -0.02 1.64 16 16 C -0.08 -1.48 6.72 31.13 0.21 -1.27 16 17 C -0.14 -3.81 6.74 32.83 0.22 -3.59 16 18 C 0.19 6.19 3.46 45.17 0.16 6.34 16 19 H 0.06 1.95 8.09 -2.39 -0.02 1.93 16 20 N -0.75 -32.48 4.62 -322.08 -1.49 -33.97 16 21 C -0.22 -11.98 10.44 84.03 0.88 -11.10 16 22 H 0.06 3.77 8.06 -2.91 -0.02 3.75 16 23 C -0.06 -3.49 5.50 84.86 0.47 -3.02 16 24 N -0.98 -62.65 13.97 21.65 0.30 -62.35 16 25 Si 0.94 45.71 27.74 68.60 1.90 47.61 16 26 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 27 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 28 H -0.25 -11.13 6.52 99.48 0.65 -10.48 16 29 C -0.12 -3.05 2.58 -10.62 -0.03 -3.08 16 30 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 31 C 0.13 3.83 6.52 85.07 0.56 4.39 16 32 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16 34 H 0.10 0.90 8.11 -2.39 -0.02 0.88 16 35 H 0.11 2.74 8.14 -2.39 -0.02 2.72 16 36 H 0.10 1.76 7.97 -2.39 -0.02 1.74 16 37 H 0.12 1.63 8.14 -2.38 -0.02 1.61 16 38 H 0.12 1.70 8.14 -2.38 -0.02 1.68 16 39 H 0.10 1.64 8.14 -2.38 -0.02 1.62 16 40 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.05 1.63 7.99 -2.38 -0.02 1.61 16 46 H 0.36 15.60 4.06 -92.71 -0.38 15.23 16 47 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 48 H 0.07 2.33 8.10 -2.39 -0.02 2.31 16 49 H 0.05 1.82 6.96 -2.38 -0.02 1.80 16 Total: -1.00 -75.22 399.58 4.03 -71.19 By element: Atomic # 1 Polarization: 25.66 SS G_CDS: 0.53 Total: 26.19 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: 5.33 Total: -2.62 kcal Atomic # 7 Polarization: -119.07 SS G_CDS: -4.52 Total: -123.59 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: 0.78 Total: -18.78 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 1.90 Total: 47.61 kcal Total: -75.22 4.03 -71.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026316176.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.599 kcal (2) G-P(sol) polarization free energy of solvation -75.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.57 seconds