Wall clock time and date at job start Wed Apr 1 2020 04:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38358 * 119.40789 * 2 1 4 4 C 1.38330 * 119.45842 * 179.97438 * 3 2 1 5 5 C 1.50705 * 120.82497 * 180.02562 * 4 3 2 6 6 C 1.39987 * 118.34967 * 359.73584 * 4 3 2 7 7 C 1.47524 * 120.59848 * 180.28693 * 6 4 3 8 8 O 1.21587 * 120.00061 * 270.24110 * 7 6 4 9 9 N 1.34781 * 120.00342 * 90.23659 * 7 6 4 10 10 C 1.48341 * 128.19727 * 0.03187 * 9 7 6 11 11 C 1.54467 * 104.30934 * 138.22550 * 10 9 7 12 12 H 1.08997 * 111.92503 * 263.69607 * 11 10 9 13 13 C 1.54143 * 108.79931 * 138.54854 * 11 10 9 14 14 C 1.54842 * 104.34200 * 224.03997 * 13 11 10 15 15 C 1.54835 * 102.73081 * 38.23151 * 14 13 11 16 16 H 1.09000 * 110.46151 * 80.49039 * 15 14 13 17 17 N 1.46501 * 110.45179 * 203.05044 * 15 14 13 18 18 C 1.36935 * 120.00210 * 269.92176 * 17 15 14 19 19 H 1.08002 * 119.99938 * 0.02562 * 18 17 15 20 20 C 1.38814 * 120.00475 * 180.02562 * 18 17 15 21 21 N 1.31622 * 119.99711 * 0.02562 * 20 18 17 22 22 Si 1.86791 * 120.00393 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47060 * 60.00263 * 22 20 18 24 24 H 1.48498 * 109.47280 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47347 * 300.00364 * 22 20 18 26 26 C 1.54141 * 104.35050 * 321.76666 * 15 14 13 27 27 H 1.08995 * 111.89263 * 261.15323 * 26 15 14 28 28 C 1.48340 * 128.19849 * 179.70565 * 9 7 6 29 29 C 1.40283 * 118.80663 * 0.52057 * 6 4 3 30 30 O 1.35422 * 119.80094 * 179.73932 * 29 6 4 31 31 N 1.31884 * 119.40785 * 179.97438 * 2 1 3 32 32 H 1.09005 * 109.47044 * 270.02004 * 1 2 3 33 33 H 1.08996 * 109.47075 * 30.02437 * 1 2 3 34 34 H 1.09007 * 109.47177 * 150.02362 * 1 2 3 35 35 H 1.08001 * 120.26677 * 359.97438 * 3 2 1 36 36 H 1.08996 * 109.47228 * 89.99777 * 5 4 3 37 37 H 1.09006 * 109.47202 * 210.00388 * 5 4 3 38 38 H 1.09007 * 109.46783 * 329.99995 * 5 4 3 39 39 H 1.09002 * 110.46196 * 256.93556 * 10 9 7 40 40 H 1.09005 * 110.46497 * 19.38693 * 10 9 7 41 41 H 1.08999 * 110.45757 * 342.75388 * 13 11 10 42 42 H 1.08998 * 110.45763 * 105.32358 * 13 11 10 43 43 H 1.08995 * 110.76059 * 279.91599 * 14 13 11 44 44 H 1.09000 * 110.91468 * 156.61376 * 14 13 11 45 45 H 0.97001 * 119.99867 * 89.93344 * 17 15 14 46 46 H 0.96994 * 120.00339 * 179.97438 * 21 20 18 47 47 H 1.09005 * 110.46451 * 340.47728 * 28 9 7 48 48 H 1.08988 * 110.46772 * 103.06671 * 28 9 7 49 49 H 0.96700 * 114.00112 * 269.73046 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5696 1.2065 0.0005 5 6 4.3407 2.5014 0.0011 6 6 4.2355 -0.0249 0.0067 7 6 5.7096 -0.0814 0.0140 8 8 6.3223 -0.1029 -1.0360 9 7 6.3773 -0.1092 1.1844 10 6 5.8200 -0.0911 2.5591 11 6 6.6724 -1.1229 3.3303 12 1 6.1900 -2.0993 3.3722 13 6 6.9917 -0.5577 4.7284 14 6 8.4928 -0.8751 4.9368 15 6 9.0910 -0.6348 3.5290 16 1 9.2561 0.4295 3.3618 17 7 10.3427 -1.3795 3.3708 18 6 11.5340 -0.7965 3.7116 19 1 11.5507 0.2120 4.0976 20 6 12.7201 -1.5018 3.5612 21 7 12.6997 -2.7308 3.0904 22 14 14.3450 -0.7069 4.0269 23 1 14.3237 -0.3438 5.4667 24 1 15.4537 -1.6620 3.7742 25 1 14.5493 0.5168 3.2108 26 6 8.0183 -1.1723 2.5613 27 1 8.2527 -2.1780 2.2127 28 6 7.8431 -0.1719 1.4031 29 6 3.4757 -1.2041 0.0010 30 8 4.0991 -2.4064 0.0015 31 7 2.1546 -1.1489 0.0005 32 1 -0.3633 0.0004 1.0277 33 1 -0.3633 0.8897 -0.5142 34 1 -0.3634 -0.8902 -0.5135 35 1 1.6410 2.1375 -0.0004 36 1 4.5262 2.8133 1.0289 37 1 5.2915 2.3583 -0.5124 38 1 3.7621 3.2690 -0.5128 39 1 5.9282 0.8994 3.0011 40 1 4.7719 -0.3906 2.5494 41 1 6.8231 0.5189 4.7517 42 1 6.3881 -1.0553 5.4874 43 1 8.6295 -1.9123 5.2428 44 1 8.9363 -0.1971 5.6659 45 1 10.3276 -2.2854 3.0243 46 1 13.5285 -3.2236 2.9849 47 1 8.3469 -0.5356 0.5074 48 1 8.2283 0.8074 1.6869 49 1 4.2805 -2.7557 -0.8818 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026325737.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:11 Heat of formation + Delta-G solvation = -26.860885 kcal Electronic energy + Delta-G solvation = -30870.816440 eV Core-core repulsion = 26798.116363 eV Total energy + Delta-G solvation = -4072.700077 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 5.66 seconds Orbital eigenvalues (eV) -41.26188 -39.97715 -38.32157 -37.60915 -35.16692 -34.51541 -33.32450 -32.12909 -30.98813 -29.85626 -28.51527 -28.29627 -27.78686 -25.08977 -24.23833 -23.25868 -22.82606 -21.80245 -20.34586 -19.43730 -19.04236 -18.69607 -17.63047 -17.46189 -16.98979 -16.26350 -15.88240 -15.59344 -15.01327 -14.77926 -14.50058 -14.25390 -14.00077 -13.85793 -13.69692 -13.38071 -13.33836 -13.09622 -13.00215 -12.77864 -12.56162 -12.41333 -12.31798 -12.17902 -11.91900 -11.80605 -11.65320 -11.20161 -10.91988 -10.77011 -10.70630 -10.36947 -10.34703 -10.22220 -10.18643 -9.97118 -9.89178 -9.67266 -9.58941 -9.11660 -8.87855 -8.72004 -6.95089 -5.76522 -3.05436 0.45482 0.75200 2.44340 2.85744 3.01070 3.39224 3.43952 3.48518 3.49547 4.06994 4.15517 4.30363 4.56490 4.62668 4.64687 4.77850 4.85136 4.92118 4.95413 5.02511 5.16158 5.18127 5.22886 5.31055 5.43536 5.45116 5.45255 5.54876 5.59118 5.62382 5.66586 5.75089 5.78471 5.85549 5.92152 5.96119 6.07327 6.10114 6.17109 6.24873 6.31723 6.41599 6.55185 6.67827 6.80175 7.03943 7.15384 7.49910 7.55866 7.69413 8.03834 8.41859 9.52882 10.10533 10.44555 11.45913 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.020664 B = 0.002477 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.707108 B =11300.066022 C =11452.499341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.166 3.834 3 C -0.187 4.187 4 C 0.010 3.990 5 C -0.125 4.125 6 C -0.193 4.193 7 C 0.595 3.405 8 O -0.536 6.536 9 N -0.610 5.610 10 C 0.107 3.893 11 C -0.100 4.100 12 H 0.086 0.914 13 C -0.116 4.116 14 C -0.142 4.142 15 C 0.184 3.816 16 H 0.057 0.943 17 N -0.720 5.720 18 C -0.240 4.240 19 H 0.069 0.931 20 C -0.013 4.013 21 N -0.932 5.932 22 Si 0.906 3.094 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C -0.106 4.106 27 H 0.090 0.910 28 C 0.115 3.885 29 C 0.356 3.644 30 O -0.474 6.474 31 N -0.506 5.506 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.144 0.856 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.066 0.934 44 H 0.059 0.941 45 H 0.384 0.616 46 H 0.256 0.744 47 H 0.083 0.917 48 H 0.078 0.922 49 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.111 8.969 -4.161 27.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.028 3.972 3 C -0.207 4.207 4 C 0.002 3.998 5 C -0.181 4.181 6 C -0.200 4.200 7 C 0.381 3.619 8 O -0.414 6.414 9 N -0.342 5.342 10 C -0.015 4.015 11 C -0.119 4.119 12 H 0.104 0.896 13 C -0.154 4.154 14 C -0.183 4.183 15 C 0.073 3.927 16 H 0.075 0.925 17 N -0.360 5.360 18 C -0.372 4.372 19 H 0.087 0.913 20 C -0.209 4.209 21 N -0.580 5.580 22 Si 0.737 3.263 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.127 4.127 27 H 0.108 0.892 28 C -0.006 4.006 29 C 0.176 3.824 30 O -0.281 6.281 31 N -0.226 5.226 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.162 0.838 36 H 0.103 0.897 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.084 0.916 44 H 0.078 0.922 45 H 0.219 0.781 46 H 0.066 0.934 47 H 0.102 0.898 48 H 0.096 0.904 49 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -26.082 8.309 -4.213 27.696 hybrid contribution 1.430 0.557 -0.228 1.551 sum -24.653 8.866 -4.441 26.572 Atomic orbital electron populations 1.20798 0.88122 1.03880 1.03571 1.21180 0.96986 0.87062 0.91963 1.21768 0.93551 0.99626 1.05770 1.20267 0.93671 0.94188 0.91633 1.20949 1.00543 0.93036 1.03615 1.20851 0.94839 0.94144 1.10146 1.17299 0.85660 0.76242 0.82658 1.90835 1.68966 1.50872 1.30693 1.49157 1.08815 1.71055 1.05158 1.22721 0.97974 0.99554 0.81297 1.22716 0.95604 0.98370 0.95246 0.89599 1.22386 0.98114 0.99935 0.94961 1.23220 0.92872 1.01670 1.00520 1.21133 0.85510 0.95341 0.90702 0.92517 1.42443 1.00522 1.15835 1.77209 1.19182 0.84507 0.97794 1.35683 0.91257 1.24743 0.97751 0.96389 1.01984 1.69647 1.26556 1.10350 1.51449 0.86287 0.83724 0.78130 0.78144 1.21309 1.21735 1.21276 1.22998 0.94882 0.99696 0.95108 0.89204 1.22577 0.78822 0.99703 0.99508 1.19001 0.86290 0.84520 0.92565 1.84706 1.76592 1.32520 1.34327 1.67063 1.09085 1.30411 1.16059 0.89857 0.90214 0.90105 0.83807 0.89682 0.90386 0.90091 0.90616 0.91259 0.91801 0.92223 0.91551 0.92187 0.78145 0.93440 0.89800 0.90423 0.73343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.58 10.16 36.00 0.37 -0.22 16 2 C 0.17 1.50 6.78 -82.53 -0.56 0.94 16 3 C -0.19 -1.50 9.41 -39.50 -0.37 -1.87 16 4 C 0.01 0.10 5.95 -103.93 -0.62 -0.51 16 5 C -0.13 -1.02 9.68 36.01 0.35 -0.68 16 6 C -0.19 -2.44 4.58 -104.69 -0.48 -2.92 16 7 C 0.59 8.97 5.53 -12.47 -0.07 8.90 16 8 O -0.54 -9.91 17.39 5.29 0.09 -9.82 16 9 N -0.61 -8.67 3.32 -170.38 -0.56 -9.23 16 10 C 0.11 1.29 6.45 -2.26 -0.01 1.27 16 11 C -0.10 -1.32 3.95 -88.15 -0.35 -1.67 16 12 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 13 C -0.12 -1.47 6.36 -25.16 -0.16 -1.63 16 14 C -0.14 -2.36 6.57 -24.79 -0.16 -2.52 16 15 C 0.18 3.45 3.06 -66.37 -0.20 3.25 16 16 H 0.06 1.07 7.13 -51.93 -0.37 0.70 16 17 N -0.72 -17.50 5.20 -51.91 -0.27 -17.77 16 18 C -0.24 -6.53 9.96 -15.06 -0.15 -6.68 16 19 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 20 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 21 N -0.93 -28.01 13.06 55.49 0.72 -27.29 16 22 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 26 C -0.11 -1.72 3.63 -88.37 -0.32 -2.04 16 27 H 0.09 1.61 7.79 -51.93 -0.40 1.21 16 28 C 0.12 1.82 6.57 -2.48 -0.02 1.80 16 29 C 0.36 4.53 7.77 -16.61 -0.13 4.40 16 30 O -0.47 -5.92 13.01 -17.96 -0.23 -6.15 16 31 N -0.51 -6.01 10.28 -9.21 -0.09 -6.11 16 32 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 0.26 8.07 -51.93 -0.42 -0.16 16 34 H 0.08 0.47 8.14 -51.92 -0.42 0.04 16 35 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.08 0.81 7.20 -51.93 -0.37 0.44 16 38 H 0.08 0.47 8.10 -51.93 -0.42 0.05 16 39 H 0.08 0.79 7.20 -51.93 -0.37 0.42 16 40 H 0.07 0.80 7.43 -51.93 -0.39 0.42 16 41 H 0.06 0.72 7.18 -51.93 -0.37 0.35 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 44 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.38 10.06 7.60 -40.82 -0.31 9.75 16 46 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 47 H 0.08 1.49 7.88 -51.93 -0.41 1.08 16 48 H 0.08 1.18 7.19 -51.94 -0.37 0.80 16 49 H 0.41 3.51 9.06 45.56 0.41 3.92 16 LS Contribution 398.08 15.07 6.00 6.00 Total: -1.00 -34.22 398.08 -9.09 -43.31 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: -6.73 Total: 10.46 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: -2.98 Total: -0.64 kcal Atomic # 7 Polarization: -60.20 SS G_CDS: -0.20 Total: -60.40 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: -0.14 Total: -15.97 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.22 -9.09 -43.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026325737.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.449 kcal (2) G-P(sol) polarization free energy of solvation -34.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.66 seconds