Wall clock time and date at job start Wed Apr 1 2020 04:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38358 * 119.40789 * 2 1 4 4 C 1.38330 * 119.45842 * 179.97438 * 3 2 1 5 5 C 1.50705 * 120.82497 * 180.02562 * 4 3 2 6 6 C 1.39987 * 118.34967 * 359.73584 * 4 3 2 7 7 C 1.47524 * 120.59848 * 180.28693 * 6 4 3 8 8 O 1.21587 * 120.00061 * 270.24110 * 7 6 4 9 9 N 1.34781 * 120.00342 * 90.23659 * 7 6 4 10 10 C 1.48341 * 128.19727 * 0.03187 * 9 7 6 11 11 C 1.54467 * 104.30934 * 138.22550 * 10 9 7 12 12 H 1.08997 * 111.92503 * 263.69607 * 11 10 9 13 13 C 1.54143 * 108.79931 * 138.54854 * 11 10 9 14 14 C 1.54842 * 104.34200 * 224.03997 * 13 11 10 15 15 C 1.54835 * 102.73081 * 38.23151 * 14 13 11 16 16 H 1.09000 * 110.46151 * 80.49039 * 15 14 13 17 17 N 1.46501 * 110.45179 * 203.05044 * 15 14 13 18 18 C 1.36935 * 120.00210 * 269.92176 * 17 15 14 19 19 H 1.08002 * 119.99938 * 0.02562 * 18 17 15 20 20 C 1.38814 * 120.00475 * 180.02562 * 18 17 15 21 21 N 1.31622 * 119.99711 * 0.02562 * 20 18 17 22 22 Si 1.86791 * 120.00393 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47060 * 60.00263 * 22 20 18 24 24 H 1.48498 * 109.47280 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47347 * 300.00364 * 22 20 18 26 26 C 1.54141 * 104.35050 * 321.76666 * 15 14 13 27 27 H 1.08995 * 111.89263 * 261.15323 * 26 15 14 28 28 C 1.48340 * 128.19849 * 179.70565 * 9 7 6 29 29 C 1.40283 * 118.80663 * 0.52057 * 6 4 3 30 30 O 1.35422 * 119.80094 * 179.73932 * 29 6 4 31 31 N 1.31884 * 119.40785 * 179.97438 * 2 1 3 32 32 H 1.09005 * 109.47044 * 270.02004 * 1 2 3 33 33 H 1.08996 * 109.47075 * 30.02437 * 1 2 3 34 34 H 1.09007 * 109.47177 * 150.02362 * 1 2 3 35 35 H 1.08001 * 120.26677 * 359.97438 * 3 2 1 36 36 H 1.08996 * 109.47228 * 89.99777 * 5 4 3 37 37 H 1.09006 * 109.47202 * 210.00388 * 5 4 3 38 38 H 1.09007 * 109.46783 * 329.99995 * 5 4 3 39 39 H 1.09002 * 110.46196 * 256.93556 * 10 9 7 40 40 H 1.09005 * 110.46497 * 19.38693 * 10 9 7 41 41 H 1.08999 * 110.45757 * 342.75388 * 13 11 10 42 42 H 1.08998 * 110.45763 * 105.32358 * 13 11 10 43 43 H 1.08995 * 110.76059 * 279.91599 * 14 13 11 44 44 H 1.09000 * 110.91468 * 156.61376 * 14 13 11 45 45 H 0.97001 * 119.99867 * 89.93344 * 17 15 14 46 46 H 0.96994 * 120.00339 * 179.97438 * 21 20 18 47 47 H 1.09005 * 110.46451 * 340.47728 * 28 9 7 48 48 H 1.08988 * 110.46772 * 103.06671 * 28 9 7 49 49 H 0.96700 * 114.00112 * 269.73046 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5696 1.2065 0.0005 5 6 4.3407 2.5014 0.0011 6 6 4.2355 -0.0249 0.0067 7 6 5.7096 -0.0814 0.0140 8 8 6.3223 -0.1029 -1.0360 9 7 6.3773 -0.1092 1.1844 10 6 5.8200 -0.0911 2.5591 11 6 6.6724 -1.1229 3.3303 12 1 6.1900 -2.0993 3.3722 13 6 6.9917 -0.5577 4.7284 14 6 8.4928 -0.8751 4.9368 15 6 9.0910 -0.6348 3.5290 16 1 9.2561 0.4295 3.3618 17 7 10.3427 -1.3795 3.3708 18 6 11.5340 -0.7965 3.7116 19 1 11.5507 0.2120 4.0976 20 6 12.7201 -1.5018 3.5612 21 7 12.6997 -2.7308 3.0904 22 14 14.3450 -0.7069 4.0269 23 1 14.3237 -0.3438 5.4667 24 1 15.4537 -1.6620 3.7742 25 1 14.5493 0.5168 3.2108 26 6 8.0183 -1.1723 2.5613 27 1 8.2527 -2.1780 2.2127 28 6 7.8431 -0.1719 1.4031 29 6 3.4757 -1.2041 0.0010 30 8 4.0991 -2.4064 0.0015 31 7 2.1546 -1.1489 0.0005 32 1 -0.3633 0.0004 1.0277 33 1 -0.3633 0.8897 -0.5142 34 1 -0.3634 -0.8902 -0.5135 35 1 1.6410 2.1375 -0.0004 36 1 4.5262 2.8133 1.0289 37 1 5.2915 2.3583 -0.5124 38 1 3.7621 3.2690 -0.5128 39 1 5.9282 0.8994 3.0011 40 1 4.7719 -0.3906 2.5494 41 1 6.8231 0.5189 4.7517 42 1 6.3881 -1.0553 5.4874 43 1 8.6295 -1.9123 5.2428 44 1 8.9363 -0.1971 5.6659 45 1 10.3276 -2.2854 3.0243 46 1 13.5285 -3.2236 2.9849 47 1 8.3469 -0.5356 0.5074 48 1 8.2283 0.8074 1.6869 49 1 4.2805 -2.7557 -0.8818 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026325737.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:10 Heat of formation + Delta-G solvation = -52.823263 kcal Electronic energy + Delta-G solvation = -30871.942253 eV Core-core repulsion = 26798.116363 eV Total energy + Delta-G solvation = -4073.825890 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.16611 -41.10451 -39.54799 -38.45921 -36.69666 -35.31896 -34.95414 -32.84385 -32.72947 -31.05945 -29.87177 -29.21740 -28.41558 -26.69619 -25.29986 -24.66603 -24.07362 -22.57158 -21.62600 -20.56230 -20.39193 -19.54224 -19.12187 -18.56929 -18.26875 -17.42017 -17.10200 -16.69348 -16.38791 -15.95183 -15.58092 -15.37875 -15.20974 -14.92982 -14.79368 -14.57360 -14.23577 -14.16230 -13.95612 -13.79642 -13.67533 -13.30555 -13.24411 -13.07900 -12.97931 -12.91197 -12.83793 -12.64622 -12.58102 -12.41846 -12.13360 -12.05829 -11.69657 -11.58843 -11.50355 -11.43917 -11.33772 -10.87073 -10.65691 -10.49378 -9.92617 -9.86666 -8.96711 -7.92514 -5.20558 -0.32365 0.01413 1.30077 1.47127 1.50056 1.55870 1.77433 2.26156 2.57242 2.61422 3.15708 3.39280 3.42357 3.49896 3.53689 3.70381 3.72110 3.96922 4.04659 4.15048 4.16485 4.25762 4.30939 4.42560 4.44196 4.50153 4.55557 4.56868 4.63380 4.63698 4.65860 4.78472 4.82981 4.84300 4.95562 4.98097 5.02080 5.06581 5.11214 5.11577 5.18661 5.23846 5.39795 5.45793 5.51057 5.51517 5.62021 6.29405 6.35811 6.38956 6.78455 6.87806 7.34888 8.12342 8.34048 9.31085 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.020664 B = 0.002477 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.707108 B =11300.066022 C =11452.499341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.161 3.839 3 C -0.172 4.172 4 C 0.008 3.992 5 C -0.123 4.123 6 C -0.214 4.214 7 C 0.596 3.404 8 O -0.583 6.583 9 N -0.608 5.608 10 C 0.114 3.886 11 C -0.092 4.092 12 H 0.085 0.915 13 C -0.099 4.099 14 C -0.137 4.137 15 C 0.177 3.823 16 H 0.060 0.940 17 N -0.735 5.735 18 C -0.234 4.234 19 H 0.079 0.921 20 C -0.080 4.080 21 N -0.973 5.973 22 Si 0.971 3.029 23 H -0.276 1.276 24 H -0.300 1.300 25 H -0.278 1.278 26 C -0.102 4.102 27 H 0.062 0.938 28 C 0.119 3.881 29 C 0.340 3.660 30 O -0.492 6.492 31 N -0.529 5.529 32 H 0.097 0.903 33 H 0.109 0.891 34 H 0.074 0.926 35 H 0.187 0.813 36 H 0.100 0.900 37 H 0.048 0.952 38 H 0.110 0.890 39 H 0.104 0.896 40 H 0.080 0.920 41 H 0.090 0.910 42 H 0.081 0.919 43 H 0.045 0.955 44 H 0.059 0.941 45 H 0.370 0.630 46 H 0.249 0.751 47 H 0.052 0.948 48 H 0.088 0.912 49 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.423 12.096 -2.793 31.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.024 3.976 3 C -0.191 4.191 4 C 0.000 4.000 5 C -0.179 4.179 6 C -0.221 4.221 7 C 0.385 3.615 8 O -0.463 6.463 9 N -0.339 5.339 10 C -0.008 4.008 11 C -0.112 4.112 12 H 0.103 0.897 13 C -0.137 4.137 14 C -0.178 4.178 15 C 0.068 3.932 16 H 0.078 0.922 17 N -0.374 5.374 18 C -0.366 4.366 19 H 0.097 0.903 20 C -0.272 4.272 21 N -0.624 5.624 22 Si 0.800 3.200 23 H -0.202 1.202 24 H -0.226 1.226 25 H -0.205 1.205 26 C -0.122 4.122 27 H 0.081 0.919 28 C -0.003 4.003 29 C 0.161 3.839 30 O -0.302 6.302 31 N -0.249 5.249 32 H 0.115 0.885 33 H 0.127 0.873 34 H 0.093 0.907 35 H 0.204 0.796 36 H 0.119 0.881 37 H 0.067 0.933 38 H 0.128 0.872 39 H 0.122 0.878 40 H 0.098 0.902 41 H 0.109 0.891 42 H 0.100 0.900 43 H 0.063 0.937 44 H 0.078 0.922 45 H 0.201 0.799 46 H 0.058 0.942 47 H 0.071 0.929 48 H 0.106 0.894 49 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -29.456 11.478 -2.807 31.737 hybrid contribution 2.326 -0.386 -0.687 2.456 sum -27.130 11.092 -3.494 29.517 Atomic orbital electron populations 1.20938 0.85429 1.05065 1.04724 1.21922 0.98717 0.86718 0.90273 1.22174 0.92598 1.00910 1.03455 1.20578 0.94769 0.93701 0.90979 1.21000 0.99390 0.92922 1.04572 1.20700 0.92874 0.95521 1.12971 1.17734 0.86807 0.74960 0.81985 1.90796 1.70260 1.52954 1.32330 1.49188 1.07996 1.70529 1.06191 1.22851 0.97988 1.00427 0.79509 1.22673 0.93742 0.99173 0.95585 0.89650 1.22327 0.94929 1.01813 0.94635 1.23045 0.95891 1.00438 0.98398 1.21402 0.84109 0.94826 0.92826 0.92210 1.42672 1.01893 1.15587 1.77269 1.19605 0.85519 0.97901 1.33609 0.90330 1.25558 1.01224 0.97100 1.03294 1.69820 1.26738 1.11957 1.53840 0.85244 0.79421 0.77079 0.78237 1.20225 1.22625 1.20462 1.22799 0.96041 0.98167 0.95186 0.91905 1.22401 0.80132 0.99789 0.97964 1.19106 0.86836 0.84338 0.93607 1.84650 1.76909 1.33085 1.35531 1.67132 1.08540 1.32132 1.17137 0.88509 0.87255 0.90741 0.79622 0.88145 0.93251 0.87182 0.87831 0.90187 0.89125 0.89994 0.93659 0.92210 0.79853 0.94238 0.92891 0.89407 0.72227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.76 10.16 71.24 0.72 -0.03 16 2 C 0.16 2.44 6.78 42.58 0.29 2.73 16 3 C -0.17 -2.07 9.41 22.32 0.21 -1.86 16 4 C 0.01 0.13 5.95 -19.42 -0.12 0.02 16 5 C -0.12 -1.67 9.68 71.24 0.69 -0.98 16 6 C -0.21 -5.28 4.58 -19.91 -0.09 -5.38 16 7 C 0.60 18.37 5.53 86.69 0.48 18.85 16 8 O -0.58 -22.75 17.39 -3.99 -0.07 -22.82 16 9 N -0.61 -17.20 3.32 -811.21 -2.69 -19.89 16 10 C 0.11 2.45 6.45 86.52 0.56 3.01 16 11 C -0.09 -2.30 3.95 -9.19 -0.04 -2.33 16 12 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 13 C -0.10 -2.19 6.36 31.61 0.20 -1.99 16 14 C -0.14 -4.41 6.57 31.85 0.21 -4.21 16 15 C 0.18 6.66 3.06 46.00 0.14 6.80 16 16 H 0.06 2.22 7.13 -2.39 -0.02 2.20 16 17 N -0.74 -36.91 5.20 -318.15 -1.65 -38.56 16 18 C -0.23 -12.90 9.96 84.03 0.84 -12.07 16 19 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 20 C -0.08 -4.62 5.50 84.86 0.47 -4.16 16 21 N -0.97 -60.64 13.06 21.65 0.28 -60.36 16 22 Si 0.97 46.52 29.55 68.60 2.03 48.55 16 23 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 24 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 25 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 26 C -0.10 -3.36 3.63 -9.34 -0.03 -3.39 16 27 H 0.06 2.42 7.79 -2.39 -0.02 2.40 16 28 C 0.12 3.87 6.57 86.38 0.57 4.44 16 29 C 0.34 8.60 7.77 85.13 0.66 9.26 16 30 O -0.49 -12.82 13.01 -87.17 -1.13 -13.95 16 31 N -0.53 -11.93 10.28 -296.06 -3.04 -14.97 16 32 H 0.10 0.50 8.14 -2.38 -0.02 0.48 16 33 H 0.11 0.16 8.07 -2.39 -0.02 0.15 16 34 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 35 H 0.19 0.64 8.06 -2.91 -0.02 0.61 16 36 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.05 0.98 7.20 -2.38 -0.02 0.97 16 38 H 0.11 0.84 8.10 -2.38 -0.02 0.82 16 39 H 0.10 1.71 7.20 -2.39 -0.02 1.69 16 40 H 0.08 1.63 7.43 -2.38 -0.02 1.61 16 41 H 0.09 1.60 7.18 -2.39 -0.02 1.58 16 42 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 44 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 45 H 0.37 20.43 7.60 -92.71 -0.70 19.73 16 46 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 47 H 0.05 2.03 7.88 -2.38 -0.02 2.01 16 48 H 0.09 2.65 7.19 -2.39 -0.02 2.63 16 49 H 0.42 7.96 9.06 -74.06 -0.67 7.29 16 Total: -1.00 -78.85 398.08 -0.91 -79.76 By element: Atomic # 1 Polarization: 33.92 SS G_CDS: -0.39 Total: 33.53 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: 5.76 Total: 8.71 kcal Atomic # 7 Polarization: -126.68 SS G_CDS: -7.10 Total: -133.78 kcal Atomic # 8 Polarization: -35.57 SS G_CDS: -1.20 Total: -36.77 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.55 kcal Total: -78.85 -0.91 -79.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026325737.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.940 kcal (2) G-P(sol) polarization free energy of solvation -78.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds