Wall clock time and date at job start Wed Apr 1 2020 04:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38350 * 119.40732 * 2 1 4 4 C 1.38342 * 119.46135 * 180.02562 * 3 2 1 5 5 C 1.50697 * 120.83120 * 180.02562 * 4 3 2 6 6 C 1.39989 * 118.34485 * 359.97438 * 4 3 2 7 7 C 1.47525 * 120.59684 * 180.02562 * 6 4 3 8 8 O 1.21588 * 120.00081 * 90.00131 * 7 6 4 9 9 N 1.34778 * 119.99973 * 269.99936 * 7 6 4 10 10 C 1.49215 * 126.05690 * 0.04236 * 9 7 6 11 11 C 1.50320 * 104.32750 * 172.12377 * 10 9 7 12 12 H 1.09002 * 110.86261 * 279.87801 * 11 10 9 13 13 C 1.51006 * 124.69840 * 145.19348 * 11 10 9 14 14 C 1.56397 * 101.59668 * 204.34264 * 13 11 10 15 15 C 1.55947 * 105.78810 * 25.01787 * 14 13 11 16 16 H 1.09001 * 110.60856 * 126.26490 * 15 14 13 17 17 N 1.46498 * 110.49323 * 248.87482 * 15 14 13 18 18 C 1.36943 * 119.99752 * 269.45580 * 17 15 14 19 19 H 1.08002 * 119.99793 * 0.27665 * 18 17 15 20 20 C 1.38811 * 120.00012 * 180.27737 * 18 17 15 21 21 N 1.31611 * 120.00081 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 119.99814 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47483 * 90.00178 * 22 20 18 24 24 H 1.48498 * 109.47011 * 210.00042 * 22 20 18 25 25 H 1.48502 * 109.47495 * 329.99664 * 22 20 18 26 26 C 1.50291 * 104.15595 * 7.54173 * 15 14 13 27 27 H 1.09006 * 109.99637 * 80.47657 * 26 15 14 28 28 C 1.49693 * 126.05760 * 179.97438 * 9 7 6 29 29 C 1.40282 * 118.80762 * 0.27522 * 6 4 3 30 30 O 1.35426 * 119.80367 * 179.70196 * 29 6 4 31 31 N 1.31877 * 119.40381 * 179.97438 * 2 1 3 32 32 H 1.08992 * 109.47280 * 89.99649 * 1 2 3 33 33 H 1.08999 * 109.47004 * 210.00467 * 1 2 3 34 34 H 1.09008 * 109.46949 * 329.99771 * 1 2 3 35 35 H 1.07997 * 120.27374 * 0.02562 * 3 2 1 36 36 H 1.09001 * 109.47028 * 269.98098 * 5 4 3 37 37 H 1.09007 * 109.46710 * 29.97053 * 5 4 3 38 38 H 1.08993 * 109.47635 * 149.97568 * 5 4 3 39 39 H 1.08998 * 110.36735 * 291.74603 * 10 9 7 40 40 H 1.09010 * 110.36155 * 53.94716 * 10 9 7 41 41 H 1.08994 * 111.00218 * 322.42465 * 13 11 10 42 42 H 1.09008 * 111.00049 * 86.22507 * 13 11 10 43 43 H 1.09001 * 110.19120 * 265.94358 * 14 13 11 44 44 H 1.08997 * 110.18682 * 144.09925 * 14 13 11 45 45 H 0.97001 * 120.00384 * 89.73935 * 17 15 14 46 46 H 0.97008 * 120.00329 * 179.97438 * 21 20 18 47 47 H 1.08995 * 110.84758 * 36.70860 * 28 9 7 48 48 H 1.09003 * 111.01703 * 273.17270 * 28 9 7 49 49 H 0.96702 * 114.00049 * 90.00111 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1863 1.2052 0.0000 4 6 3.5698 1.2065 -0.0005 5 6 4.3409 2.5013 0.0000 6 6 4.2356 -0.0249 -0.0005 7 6 5.7097 -0.0815 -0.0005 8 8 6.3172 -0.1048 1.0525 9 7 6.3831 -0.1073 -1.1677 10 6 5.7780 -0.0833 -2.5315 11 6 6.9525 0.0710 -3.4569 12 1 7.2770 1.1106 -3.5023 13 6 7.0554 -0.5555 -4.8270 14 6 8.6052 -0.6231 -5.0262 15 6 9.2164 -0.6545 -3.5918 16 1 9.8851 -1.5077 -3.4783 17 7 9.9282 0.5946 -3.3102 18 6 11.2613 0.7041 -3.6037 19 1 11.7868 -0.1288 -4.0470 20 6 11.9371 1.8856 -3.3316 21 7 13.2182 1.9911 -3.6142 22 14 11.0283 3.3260 -2.5642 23 1 11.1083 3.2302 -1.0845 24 1 11.6492 4.5984 -3.0122 25 1 9.6048 3.2946 -2.9861 26 6 8.0244 -0.7963 -2.6874 27 1 7.7042 -1.8377 -2.6533 28 6 7.8706 -0.1639 -1.3257 29 6 3.4758 -1.2041 -0.0059 30 8 4.0991 -2.4064 -0.0121 31 7 2.1545 -1.1489 0.0005 32 1 -0.3633 0.0001 -1.0276 33 1 -0.3633 -0.8899 0.5139 34 1 -0.3633 0.8900 0.5139 35 1 1.6412 2.1375 0.0004 36 1 4.5267 2.8139 -1.0275 37 1 3.7620 3.2686 0.5142 38 1 5.2914 2.3579 0.5137 39 1 5.2415 -1.0121 -2.7249 40 1 5.1072 0.7698 -2.6337 41 1 6.6167 -1.5532 -4.8343 42 1 6.5911 0.0787 -5.5824 43 1 8.9541 0.2582 -5.5644 44 1 8.8754 -1.5282 -5.5701 45 1 9.4562 1.3427 -2.9120 46 1 13.6905 2.8169 -3.4243 47 1 8.3191 -0.7900 -0.5544 48 1 8.3036 0.8364 -1.3112 49 1 4.2806 -2.7599 0.8696 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026325741.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:22 Heat of formation + Delta-G solvation = -33.171566 kcal Electronic energy + Delta-G solvation = -31313.557194 eV Core-core repulsion = 27240.583466 eV Total energy + Delta-G solvation = -4072.973729 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.28286 -41.45642 -39.72579 -38.45741 -36.84158 -35.35093 -35.05304 -33.03264 -32.85612 -31.14793 -30.27080 -29.21175 -28.43302 -27.15381 -25.02411 -24.80289 -23.97645 -22.57857 -21.24427 -20.74950 -20.59495 -19.79078 -19.54399 -18.55372 -18.23308 -17.65774 -16.73807 -16.71496 -16.50392 -16.08029 -15.62360 -15.43955 -15.32446 -15.12712 -14.91816 -14.62205 -14.34423 -14.15333 -14.01618 -13.96756 -13.82852 -13.55673 -13.34324 -13.27109 -13.03901 -12.99694 -12.88484 -12.73708 -12.65968 -12.38191 -12.24512 -11.97860 -11.96112 -11.67854 -11.49586 -11.40505 -11.03873 -10.95150 -10.67171 -10.52250 -9.91177 -9.89059 -9.29868 -8.02087 -5.34002 -0.33535 -0.00973 1.28889 1.32313 1.37057 1.42666 1.65376 2.25049 2.46156 2.59400 2.84684 3.23529 3.29837 3.48647 3.51330 3.55868 3.75926 3.84239 3.95620 4.10040 4.14198 4.18429 4.22815 4.32676 4.37033 4.46447 4.50623 4.51589 4.57375 4.58887 4.64244 4.77619 4.82161 4.83921 4.91394 4.92648 4.94288 5.00169 5.07655 5.09115 5.16145 5.17124 5.30134 5.38760 5.49050 5.58586 5.80935 6.22699 6.26561 6.36930 6.76411 6.84260 7.08356 7.85051 8.02743 9.19719 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016077 B = 0.003098 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.170693 B = 9035.986602 C = 9647.752635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.163 3.837 3 C -0.173 4.173 4 C 0.006 3.994 5 C -0.125 4.125 6 C -0.214 4.214 7 C 0.592 3.408 8 O -0.580 6.580 9 N -0.609 5.609 10 C 0.130 3.870 11 C -0.115 4.115 12 H 0.071 0.929 13 C -0.083 4.083 14 C -0.138 4.138 15 C 0.190 3.810 16 H 0.053 0.947 17 N -0.744 5.744 18 C -0.221 4.221 19 H 0.061 0.939 20 C -0.062 4.062 21 N -0.984 5.984 22 Si 0.943 3.057 23 H -0.286 1.286 24 H -0.295 1.295 25 H -0.252 1.252 26 C -0.121 4.121 27 H 0.100 0.900 28 C 0.130 3.870 29 C 0.345 3.655 30 O -0.489 6.489 31 N -0.526 5.526 32 H 0.097 0.903 33 H 0.076 0.924 34 H 0.107 0.893 35 H 0.184 0.816 36 H 0.095 0.905 37 H 0.110 0.890 38 H 0.047 0.953 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.081 0.919 43 H 0.053 0.947 44 H 0.072 0.928 45 H 0.363 0.637 46 H 0.256 0.744 47 H 0.067 0.933 48 H 0.058 0.942 49 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.564 -2.414 4.405 31.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.025 3.975 3 C -0.192 4.192 4 C -0.002 4.002 5 C -0.181 4.181 6 C -0.221 4.221 7 C 0.380 3.620 8 O -0.460 6.460 9 N -0.342 5.342 10 C 0.010 3.990 11 C -0.134 4.134 12 H 0.089 0.911 13 C -0.121 4.121 14 C -0.178 4.178 15 C 0.081 3.919 16 H 0.071 0.929 17 N -0.388 5.388 18 C -0.352 4.352 19 H 0.079 0.921 20 C -0.254 4.254 21 N -0.635 5.635 22 Si 0.771 3.229 23 H -0.212 1.212 24 H -0.222 1.222 25 H -0.177 1.177 26 C -0.141 4.141 27 H 0.118 0.882 28 C 0.008 3.992 29 C 0.165 3.835 30 O -0.299 6.299 31 N -0.247 5.247 32 H 0.115 0.885 33 H 0.095 0.905 34 H 0.126 0.874 35 H 0.201 0.799 36 H 0.113 0.887 37 H 0.128 0.872 38 H 0.066 0.934 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.106 0.894 42 H 0.100 0.900 43 H 0.072 0.928 44 H 0.090 0.910 45 H 0.196 0.804 46 H 0.065 0.935 47 H 0.085 0.915 48 H 0.077 0.923 49 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -31.518 -3.254 4.369 31.985 hybrid contribution 1.386 1.382 1.080 2.235 sum -30.132 -1.872 5.449 30.678 Atomic orbital electron populations 1.20936 0.85390 1.05084 1.04737 1.21891 0.98709 0.86652 0.90206 1.22155 0.92533 1.01000 1.03553 1.20519 0.94796 0.93614 0.91263 1.20995 0.99453 0.93389 1.04274 1.20717 0.92934 0.95507 1.12903 1.17779 0.86875 0.75094 0.82227 1.90796 1.70534 1.52705 1.31992 1.49847 1.07080 1.71105 1.06160 1.21366 0.95219 1.03024 0.79439 1.22215 0.94712 1.00159 0.96313 0.91101 1.21695 0.95158 1.01442 0.93830 1.23625 0.95067 1.01763 0.97357 1.20372 0.90690 0.88039 0.92829 0.92878 1.42773 1.06884 1.13409 1.75698 1.19053 0.85517 0.98548 1.32046 0.92085 1.25385 0.96329 1.00665 1.02983 1.69861 1.09765 1.27705 1.56133 0.85589 0.79223 0.79747 0.78324 1.21229 1.22198 1.17650 1.22377 0.97694 1.00722 0.93290 0.88163 1.21306 0.79600 1.00552 0.97703 1.19051 0.86742 0.84300 0.93360 1.84636 1.76851 1.32744 1.35645 1.67150 1.08548 1.31918 1.17047 0.88492 0.90535 0.87435 0.79901 0.88684 0.87181 0.93393 0.89811 0.89727 0.89373 0.90039 0.92791 0.90970 0.80357 0.93496 0.91468 0.92335 0.72114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.74 10.16 71.24 0.72 -0.02 16 2 C 0.16 2.44 6.78 42.58 0.29 2.73 16 3 C -0.17 -2.21 9.41 22.32 0.21 -2.00 16 4 C 0.01 0.11 5.95 -19.42 -0.12 -0.01 16 5 C -0.12 -2.02 9.69 71.23 0.69 -1.33 16 6 C -0.21 -5.23 4.88 -19.91 -0.10 -5.33 16 7 C 0.59 18.01 5.48 86.69 0.47 18.48 16 8 O -0.58 -22.18 17.44 -3.99 -0.07 -22.25 16 9 N -0.61 -17.22 3.43 -818.87 -2.81 -20.03 16 10 C 0.13 2.88 6.39 84.99 0.54 3.42 16 11 C -0.11 -2.79 2.71 -10.57 -0.03 -2.82 16 12 H 0.07 1.98 7.63 -2.39 -0.02 1.97 16 13 C -0.08 -1.78 6.70 31.13 0.21 -1.57 16 14 C -0.14 -4.05 6.73 32.80 0.22 -3.83 16 15 C 0.19 6.68 3.47 45.14 0.16 6.84 16 16 H 0.05 2.00 8.09 -2.39 -0.02 1.98 16 17 N -0.74 -33.25 4.61 -322.24 -1.49 -34.73 16 18 C -0.22 -12.27 10.44 84.03 0.88 -11.39 16 19 H 0.06 3.71 8.06 -2.91 -0.02 3.69 16 20 C -0.06 -3.66 5.50 84.86 0.47 -3.19 16 21 N -0.98 -63.08 13.97 21.65 0.30 -62.78 16 22 Si 0.94 45.71 27.74 68.60 1.90 47.61 16 23 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 24 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 25 H -0.25 -10.91 6.52 99.48 0.65 -10.26 16 26 C -0.12 -3.51 2.63 -10.60 -0.03 -3.54 16 27 H 0.10 2.63 8.14 -2.38 -0.02 2.61 16 28 C 0.13 4.21 6.48 85.08 0.55 4.76 16 29 C 0.34 8.23 7.77 85.13 0.66 8.89 16 30 O -0.49 -11.37 13.01 -87.22 -1.14 -12.51 16 31 N -0.53 -11.34 10.28 -296.05 -3.04 -14.38 16 32 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.11 0.19 8.07 -2.38 -0.02 0.17 16 35 H 0.18 0.85 8.06 -2.91 -0.02 0.83 16 36 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.11 1.11 8.10 -2.38 -0.02 1.09 16 38 H 0.05 1.08 7.19 -2.39 -0.02 1.07 16 39 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 41 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 43 H 0.05 1.86 7.98 -2.39 -0.02 1.84 16 44 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 45 H 0.36 15.85 4.01 -92.71 -0.37 15.48 16 46 H 0.26 15.74 8.31 -92.70 -0.77 14.97 16 47 H 0.07 2.35 8.09 -2.39 -0.02 2.33 16 48 H 0.06 2.10 6.93 -2.39 -0.02 2.08 16 49 H 0.42 6.73 9.06 -74.06 -0.67 6.06 16 Total: -1.00 -78.71 395.24 -0.65 -79.36 By element: Atomic # 1 Polarization: 29.73 SS G_CDS: -0.12 Total: 29.60 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: 5.80 Total: 10.10 kcal Atomic # 7 Polarization: -124.89 SS G_CDS: -7.03 Total: -131.92 kcal Atomic # 8 Polarization: -33.55 SS G_CDS: -1.20 Total: -34.76 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 1.90 Total: 47.61 kcal Total: -78.71 -0.65 -79.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026325741.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.187 kcal (2) G-P(sol) polarization free energy of solvation -78.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds