Wall clock time and date at job start Wed Apr 1 2020 04:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38355 * 119.41037 * 2 1 4 4 C 1.38333 * 119.45576 * 179.97438 * 3 2 1 5 5 C 1.50709 * 120.82297 * 179.97438 * 4 3 2 6 6 C 1.39988 * 118.35208 * 359.97438 * 4 3 2 7 7 C 1.47529 * 120.59585 * 180.02562 * 6 4 3 8 8 O 1.21587 * 119.99755 * 89.99909 * 7 6 4 9 9 N 1.34773 * 119.99847 * 269.99564 * 7 6 4 10 10 C 1.48350 * 128.19471 * 359.68480 * 9 7 6 11 11 C 1.54912 * 104.07323 * 138.25839 * 10 9 7 12 12 H 1.08997 * 112.55234 * 263.89625 * 11 10 9 13 13 C 1.55458 * 109.07292 * 138.46715 * 11 10 9 14 14 C 1.53955 * 106.11711 * 228.94688 * 13 11 10 15 15 C 1.53956 * 104.89071 * 29.97851 * 14 13 11 16 16 H 1.09003 * 110.19911 * 211.26879 * 15 14 13 17 17 N 1.46496 * 110.14391 * 89.57672 * 15 14 13 18 18 C 1.36933 * 119.99921 * 138.41908 * 17 15 14 19 19 H 1.07993 * 120.00264 * 0.02562 * 18 17 15 20 20 C 1.38816 * 120.00010 * 180.02562 * 18 17 15 21 21 N 1.31622 * 119.99907 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00058 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47380 * 60.00145 * 22 20 18 24 24 H 1.48505 * 109.47183 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47369 * 300.00130 * 22 20 18 26 26 C 1.53563 * 106.02885 * 330.43721 * 15 14 13 27 27 H 1.09000 * 111.66087 * 254.94747 * 26 15 14 28 28 C 1.48348 * 128.19430 * 179.97438 * 9 7 6 29 29 C 1.40278 * 118.80463 * 359.97438 * 6 4 3 30 30 O 1.35431 * 119.79542 * 180.02562 * 29 6 4 31 31 N 1.31882 * 119.40435 * 179.97438 * 2 1 3 32 32 H 1.09001 * 109.47181 * 270.02335 * 1 2 3 33 33 H 1.09002 * 109.47192 * 30.02189 * 1 2 3 34 34 H 1.08997 * 109.47920 * 150.02712 * 1 2 3 35 35 H 1.07993 * 120.26804 * 359.95720 * 3 2 1 36 36 H 1.09005 * 109.46756 * 90.00355 * 5 4 3 37 37 H 1.08997 * 109.46988 * 210.00009 * 5 4 3 38 38 H 1.08990 * 109.46788 * 330.00345 * 5 4 3 39 39 H 1.09007 * 110.47101 * 256.99596 * 10 9 7 40 40 H 1.08996 * 110.47177 * 19.59657 * 10 9 7 41 41 H 1.09000 * 109.75276 * 109.96505 * 13 11 10 42 42 H 1.09005 * 110.50450 * 348.33553 * 13 11 10 43 43 H 1.08997 * 110.36097 * 271.12176 * 14 13 11 44 44 H 1.09002 * 110.44955 * 148.87585 * 14 13 11 45 45 H 0.96995 * 120.00101 * 318.42175 * 17 15 14 46 46 H 0.96999 * 119.99738 * 179.97438 * 21 20 18 47 47 H 1.09005 * 110.47205 * 340.41017 * 28 9 7 48 48 H 1.09004 * 110.47127 * 103.00586 * 28 9 7 49 49 H 0.96701 * 114.00235 * 269.97909 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2052 0.0000 4 6 3.5697 1.2063 0.0005 5 6 4.3409 2.5012 0.0000 6 6 4.2354 -0.0251 0.0016 7 6 5.7097 -0.0817 0.0028 8 8 6.3163 -0.1045 1.0563 9 7 6.3839 -0.1081 -1.1638 10 6 5.8341 -0.0941 -2.5416 11 6 6.7687 0.8729 -3.3104 12 1 6.3704 1.8862 -3.3624 13 6 7.0662 0.2811 -4.7168 14 6 8.5933 0.3558 -4.8976 15 6 9.1669 0.2267 -3.4748 16 1 10.0988 0.7862 -3.3925 17 7 9.3953 -1.1832 -3.1489 18 6 10.5333 -1.5569 -2.4854 19 1 11.2624 -0.8123 -2.2020 20 6 10.7500 -2.8930 -2.1771 21 7 9.8617 -3.8006 -2.5229 22 14 12.3021 -3.4027 -1.2714 23 1 12.3547 -2.7176 0.0452 24 1 12.2943 -4.8733 -1.0647 25 1 13.4917 -3.0226 -2.0750 26 6 8.1082 0.8218 -2.5351 27 1 8.4016 1.8061 -2.1703 28 6 7.8513 -0.1641 -1.3742 29 6 3.4756 -1.2042 0.0027 30 8 4.0990 -2.4065 0.0042 31 7 2.1544 -1.1489 0.0005 32 1 -0.3633 0.0004 1.0277 33 1 -0.3634 0.8898 -0.5142 34 1 -0.3635 -0.8902 -0.5134 35 1 1.6412 2.1374 -0.0007 36 1 4.5264 2.8139 1.0276 37 1 5.2916 2.3576 -0.5134 38 1 3.7623 3.2683 -0.5145 39 1 5.8726 -1.0925 -2.9776 40 1 4.8114 0.2829 -2.5401 41 1 6.5682 0.8783 -5.4806 42 1 6.7317 -0.7548 -4.7737 43 1 8.8770 1.3128 -5.3355 44 1 8.9432 -0.4652 -5.5235 45 1 8.7403 -1.8520 -3.4031 46 1 10.0132 -4.7342 -2.3077 47 1 8.3778 0.1592 -0.4761 48 1 8.1581 -1.1716 -1.6550 49 1 4.2801 -2.7569 -0.8787 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026325743.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:29 Heat of formation + Delta-G solvation = -17.614612 kcal Electronic energy + Delta-G solvation = -31700.167267 eV Core-core repulsion = 27627.868139 eV Total energy + Delta-G solvation = -4072.299128 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.06107 -39.81504 -38.11630 -37.41206 -34.96654 -34.32725 -33.39217 -31.95658 -30.92631 -29.62786 -28.28208 -28.19571 -27.66387 -25.19484 -24.16053 -23.27678 -22.95358 -21.61201 -19.91307 -19.32901 -18.58309 -18.50067 -17.52604 -17.36700 -17.06344 -16.09033 -15.64173 -15.34643 -15.00097 -14.61303 -14.46966 -14.20442 -13.82671 -13.72150 -13.54221 -13.28660 -13.21056 -13.17227 -12.74023 -12.65800 -12.58191 -12.31122 -12.19381 -12.05074 -11.77948 -11.72146 -11.31101 -11.02914 -10.84428 -10.76886 -10.53904 -10.30074 -10.28496 -10.14826 -10.03275 -9.94899 -9.70322 -9.64986 -9.39176 -9.02958 -8.92077 -8.29908 -6.99731 -5.84311 -3.13976 0.64880 0.92238 2.76109 3.09963 3.33061 3.43150 3.48547 3.48604 3.49253 4.26314 4.31440 4.50901 4.55119 4.71913 4.79397 4.91777 4.98212 4.99865 5.09918 5.17771 5.28373 5.34080 5.37797 5.42160 5.51638 5.55635 5.59167 5.61043 5.70317 5.74118 5.79865 5.85128 5.93819 6.00223 6.01504 6.05622 6.13165 6.27159 6.29164 6.38517 6.48884 6.53999 6.63464 6.82846 6.87381 7.19350 7.37030 7.66437 7.71129 7.86721 8.33727 8.38175 9.45917 9.98931 10.33610 11.37184 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013529 B = 0.003436 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.202687 B = 8145.893877 C = 9011.210313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.163 3.837 3 C -0.189 4.189 4 C 0.008 3.992 5 C -0.122 4.122 6 C -0.188 4.188 7 C 0.588 3.412 8 O -0.531 6.531 9 N -0.613 5.613 10 C 0.108 3.892 11 C -0.099 4.099 12 H 0.079 0.921 13 C -0.111 4.111 14 C -0.134 4.134 15 C 0.178 3.822 16 H 0.063 0.937 17 N -0.710 5.710 18 C -0.249 4.249 19 H 0.071 0.929 20 C -0.006 4.006 21 N -0.929 5.929 22 Si 0.905 3.095 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.286 1.286 26 C -0.124 4.124 27 H 0.070 0.930 28 C 0.103 3.897 29 C 0.355 3.645 30 O -0.471 6.471 31 N -0.506 5.506 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.143 0.857 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.064 0.936 41 H 0.056 0.944 42 H 0.067 0.933 43 H 0.057 0.943 44 H 0.072 0.928 45 H 0.385 0.615 46 H 0.257 0.743 47 H 0.067 0.933 48 H 0.133 0.867 49 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.718 13.210 -2.611 22.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.025 3.975 3 C -0.208 4.208 4 C 0.000 4.000 5 C -0.179 4.179 6 C -0.195 4.195 7 C 0.375 3.625 8 O -0.407 6.407 9 N -0.346 5.346 10 C -0.016 4.016 11 C -0.118 4.118 12 H 0.097 0.903 13 C -0.149 4.149 14 C -0.173 4.173 15 C 0.066 3.934 16 H 0.081 0.919 17 N -0.350 5.350 18 C -0.380 4.380 19 H 0.089 0.911 20 C -0.203 4.203 21 N -0.576 5.576 22 Si 0.736 3.264 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.147 4.147 27 H 0.088 0.912 28 C -0.017 4.017 29 C 0.175 3.825 30 O -0.278 6.278 31 N -0.226 5.226 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.160 0.840 36 H 0.103 0.897 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.082 0.918 41 H 0.074 0.926 42 H 0.085 0.915 43 H 0.076 0.924 44 H 0.091 0.909 45 H 0.220 0.780 46 H 0.067 0.933 47 H 0.085 0.915 48 H 0.150 0.850 49 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -17.671 12.362 -1.251 21.602 hybrid contribution 1.092 0.030 0.014 1.092 sum -16.579 12.393 -1.238 20.736 Atomic orbital electron populations 1.20776 0.88248 1.03767 1.03442 1.21145 0.96902 0.87119 0.92376 1.21730 0.93556 0.99516 1.06046 1.20246 0.93612 0.94196 0.91932 1.20922 1.00250 0.93004 1.03715 1.20909 0.95255 0.94026 1.09318 1.17255 0.85434 0.76915 0.82922 1.90820 1.69092 1.50376 1.30448 1.49264 1.09749 1.71111 1.04497 1.22718 0.96902 1.00034 0.81906 1.22945 0.95852 0.97855 0.95142 0.90312 1.22417 0.97071 1.00527 0.94908 1.22600 0.94504 1.01177 0.99009 1.20696 0.95055 0.87273 0.90327 0.91864 1.42509 1.23420 1.01569 1.67537 1.19212 0.97503 0.91981 1.29321 0.91066 1.24720 0.98392 0.95902 1.01281 1.69623 1.35439 1.01037 1.51542 0.86304 0.82907 0.77407 0.79800 1.21093 1.21704 1.21293 1.23247 0.95794 0.98552 0.97082 0.91191 1.23248 0.76741 1.04466 0.97266 1.19028 0.86251 0.84678 0.92510 1.84767 1.76548 1.32408 1.34108 1.67051 1.09161 1.30367 1.16055 0.90024 0.90308 0.90150 0.83967 0.89710 0.90563 0.90292 0.90442 0.91787 0.92569 0.91453 0.92378 0.90949 0.78041 0.93316 0.91458 0.85008 0.73518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.73 10.16 36.00 0.37 -0.37 16 2 C 0.16 1.77 6.78 -82.53 -0.56 1.21 16 3 C -0.19 -1.85 9.41 -39.50 -0.37 -2.22 16 4 C 0.01 0.10 5.95 -103.93 -0.62 -0.52 16 5 C -0.12 -1.23 9.69 36.01 0.35 -0.88 16 6 C -0.19 -2.88 4.58 -104.69 -0.48 -3.36 16 7 C 0.59 10.75 5.53 -12.47 -0.07 10.68 16 8 O -0.53 -12.07 17.39 5.29 0.09 -11.98 16 9 N -0.61 -10.27 3.31 -169.83 -0.56 -10.83 16 10 C 0.11 1.44 6.48 -2.01 -0.01 1.43 16 11 C -0.10 -1.26 4.06 -87.33 -0.35 -1.62 16 12 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 13 C -0.11 -1.39 6.41 -24.93 -0.16 -1.55 16 14 C -0.13 -1.94 6.50 -25.73 -0.17 -2.11 16 15 C 0.18 3.13 3.53 -67.14 -0.24 2.89 16 16 H 0.06 1.15 7.91 -51.93 -0.41 0.74 16 17 N -0.71 -15.76 2.88 -52.66 -0.15 -15.92 16 18 C -0.25 -6.41 9.45 -15.06 -0.14 -6.55 16 19 H 0.07 1.80 7.74 -52.49 -0.41 1.40 16 20 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 21 N -0.93 -26.58 13.06 55.49 0.72 -25.85 16 22 Si 0.91 22.02 29.55 -169.99 -5.02 17.00 16 23 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 25 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 26 C -0.12 -1.97 3.88 -88.59 -0.34 -2.31 16 27 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 28 C 0.10 1.98 6.25 -2.26 -0.01 1.96 16 29 C 0.35 5.47 7.77 -16.61 -0.13 5.34 16 30 O -0.47 -7.46 13.01 -17.98 -0.23 -7.69 16 31 N -0.51 -7.10 10.28 -9.21 -0.09 -7.20 16 32 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.36 8.07 -51.93 -0.42 -0.06 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 36 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.08 0.89 7.19 -51.93 -0.37 0.52 16 38 H 0.08 0.56 8.10 -51.93 -0.42 0.13 16 39 H 0.08 1.06 7.25 -51.92 -0.38 0.68 16 40 H 0.06 0.74 7.43 -51.93 -0.39 0.36 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.07 0.88 7.20 -51.93 -0.37 0.51 16 43 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.07 1.16 8.09 -51.93 -0.42 0.74 16 45 H 0.38 9.12 7.62 -40.82 -0.31 8.81 16 46 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 47 H 0.07 1.43 7.88 -51.93 -0.41 1.02 16 48 H 0.13 3.00 5.22 -51.93 -0.27 2.73 16 49 H 0.41 4.69 9.06 45.56 0.41 5.11 16 LS Contribution 394.84 15.07 5.95 5.95 Total: -1.00 -33.20 394.84 -9.02 -42.22 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: -6.68 Total: 12.53 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: -3.04 Total: 1.76 kcal Atomic # 7 Polarization: -59.71 SS G_CDS: -0.08 Total: -59.80 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: -0.14 Total: -19.67 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.20 -9.02 -42.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026325743.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.604 kcal (2) G-P(sol) polarization free energy of solvation -33.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds