Wall clock time and date at job start Wed Apr 1 2020 04:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38355 * 119.41037 * 2 1 4 4 C 1.38333 * 119.45576 * 179.97438 * 3 2 1 5 5 C 1.50709 * 120.82297 * 179.97438 * 4 3 2 6 6 C 1.39988 * 118.35208 * 359.97438 * 4 3 2 7 7 C 1.47529 * 120.59585 * 180.02562 * 6 4 3 8 8 O 1.21587 * 119.99755 * 89.99909 * 7 6 4 9 9 N 1.34773 * 119.99847 * 269.99564 * 7 6 4 10 10 C 1.48350 * 128.19471 * 359.68480 * 9 7 6 11 11 C 1.54912 * 104.07323 * 138.25839 * 10 9 7 12 12 H 1.08997 * 112.55234 * 263.89625 * 11 10 9 13 13 C 1.55458 * 109.07292 * 138.46715 * 11 10 9 14 14 C 1.53955 * 106.11711 * 228.94688 * 13 11 10 15 15 C 1.53956 * 104.89071 * 29.97851 * 14 13 11 16 16 H 1.09003 * 110.19911 * 211.26879 * 15 14 13 17 17 N 1.46496 * 110.14391 * 89.57672 * 15 14 13 18 18 C 1.36933 * 119.99921 * 138.41908 * 17 15 14 19 19 H 1.07993 * 120.00264 * 0.02562 * 18 17 15 20 20 C 1.38816 * 120.00010 * 180.02562 * 18 17 15 21 21 N 1.31622 * 119.99907 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00058 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47380 * 60.00145 * 22 20 18 24 24 H 1.48505 * 109.47183 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47369 * 300.00130 * 22 20 18 26 26 C 1.53563 * 106.02885 * 330.43721 * 15 14 13 27 27 H 1.09000 * 111.66087 * 254.94747 * 26 15 14 28 28 C 1.48348 * 128.19430 * 179.97438 * 9 7 6 29 29 C 1.40278 * 118.80463 * 359.97438 * 6 4 3 30 30 O 1.35431 * 119.79542 * 180.02562 * 29 6 4 31 31 N 1.31882 * 119.40435 * 179.97438 * 2 1 3 32 32 H 1.09001 * 109.47181 * 270.02335 * 1 2 3 33 33 H 1.09002 * 109.47192 * 30.02189 * 1 2 3 34 34 H 1.08997 * 109.47920 * 150.02712 * 1 2 3 35 35 H 1.07993 * 120.26804 * 359.95720 * 3 2 1 36 36 H 1.09005 * 109.46756 * 90.00355 * 5 4 3 37 37 H 1.08997 * 109.46988 * 210.00009 * 5 4 3 38 38 H 1.08990 * 109.46788 * 330.00345 * 5 4 3 39 39 H 1.09007 * 110.47101 * 256.99596 * 10 9 7 40 40 H 1.08996 * 110.47177 * 19.59657 * 10 9 7 41 41 H 1.09000 * 109.75276 * 109.96505 * 13 11 10 42 42 H 1.09005 * 110.50450 * 348.33553 * 13 11 10 43 43 H 1.08997 * 110.36097 * 271.12176 * 14 13 11 44 44 H 1.09002 * 110.44955 * 148.87585 * 14 13 11 45 45 H 0.96995 * 120.00101 * 318.42175 * 17 15 14 46 46 H 0.96999 * 119.99738 * 179.97438 * 21 20 18 47 47 H 1.09005 * 110.47205 * 340.41017 * 28 9 7 48 48 H 1.09004 * 110.47127 * 103.00586 * 28 9 7 49 49 H 0.96701 * 114.00235 * 269.97909 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2052 0.0000 4 6 3.5697 1.2063 0.0005 5 6 4.3409 2.5012 0.0000 6 6 4.2354 -0.0251 0.0016 7 6 5.7097 -0.0817 0.0028 8 8 6.3163 -0.1045 1.0563 9 7 6.3839 -0.1081 -1.1638 10 6 5.8341 -0.0941 -2.5416 11 6 6.7687 0.8729 -3.3104 12 1 6.3704 1.8862 -3.3624 13 6 7.0662 0.2811 -4.7168 14 6 8.5933 0.3558 -4.8976 15 6 9.1669 0.2267 -3.4748 16 1 10.0988 0.7862 -3.3925 17 7 9.3953 -1.1832 -3.1489 18 6 10.5333 -1.5569 -2.4854 19 1 11.2624 -0.8123 -2.2020 20 6 10.7500 -2.8930 -2.1771 21 7 9.8617 -3.8006 -2.5229 22 14 12.3021 -3.4027 -1.2714 23 1 12.3547 -2.7176 0.0452 24 1 12.2943 -4.8733 -1.0647 25 1 13.4917 -3.0226 -2.0750 26 6 8.1082 0.8218 -2.5351 27 1 8.4016 1.8061 -2.1703 28 6 7.8513 -0.1641 -1.3742 29 6 3.4756 -1.2042 0.0027 30 8 4.0990 -2.4065 0.0042 31 7 2.1544 -1.1489 0.0005 32 1 -0.3633 0.0004 1.0277 33 1 -0.3634 0.8898 -0.5142 34 1 -0.3635 -0.8902 -0.5134 35 1 1.6412 2.1374 -0.0007 36 1 4.5264 2.8139 1.0276 37 1 5.2916 2.3576 -0.5134 38 1 3.7623 3.2683 -0.5145 39 1 5.8726 -1.0925 -2.9776 40 1 4.8114 0.2829 -2.5401 41 1 6.5682 0.8783 -5.4806 42 1 6.7317 -0.7548 -4.7737 43 1 8.8770 1.3128 -5.3355 44 1 8.9432 -0.4652 -5.5235 45 1 8.7403 -1.8520 -3.4031 46 1 10.0132 -4.7342 -2.3077 47 1 8.3778 0.1592 -0.4761 48 1 8.1581 -1.1716 -1.6550 49 1 4.2801 -2.7569 -0.8787 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026325743.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:28 Heat of formation + Delta-G solvation = -42.605507 kcal Electronic energy + Delta-G solvation = -31701.250954 eV Core-core repulsion = 27627.868139 eV Total energy + Delta-G solvation = -4073.382815 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.14994 -41.06506 -39.51635 -38.50277 -36.52775 -35.30595 -34.99896 -32.84679 -32.65052 -30.86480 -29.78311 -29.18497 -28.42326 -26.67580 -25.49051 -24.93216 -24.05287 -22.53524 -21.13595 -20.57870 -19.93516 -19.59387 -19.39534 -18.48413 -18.26735 -17.34816 -16.88936 -16.74508 -16.55633 -16.00094 -15.51872 -15.30390 -15.18100 -15.01252 -14.91424 -14.30019 -14.23083 -14.11947 -13.98261 -13.91614 -13.68493 -13.26960 -13.21276 -13.06285 -13.00038 -12.84924 -12.82349 -12.64378 -12.37938 -12.25399 -12.20283 -11.93813 -11.54345 -11.42723 -11.38837 -11.37399 -11.24166 -10.94186 -10.63786 -10.51875 -9.87975 -9.81499 -8.88523 -7.94359 -5.19446 -0.31555 0.00473 1.36926 1.44514 1.47548 1.51501 1.87444 2.31723 2.51884 2.55400 3.22380 3.39422 3.48550 3.53754 3.56046 3.73624 3.84517 3.96786 4.14606 4.17592 4.27033 4.33855 4.36191 4.47753 4.49797 4.56512 4.57385 4.61978 4.63296 4.77031 4.80303 4.82657 4.87002 4.95490 5.00328 5.03087 5.08600 5.12268 5.18448 5.20687 5.23249 5.42752 5.48355 5.51067 5.52179 5.61231 5.64732 6.28503 6.35404 6.50803 6.77959 6.97019 7.36296 8.12346 8.34043 9.27645 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013529 B = 0.003436 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.202687 B = 8145.893877 C = 9011.210313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.159 3.841 3 C -0.169 4.169 4 C 0.007 3.993 5 C -0.120 4.120 6 C -0.212 4.212 7 C 0.589 3.411 8 O -0.592 6.592 9 N -0.608 5.608 10 C 0.108 3.892 11 C -0.083 4.083 12 H 0.114 0.886 13 C -0.104 4.104 14 C -0.125 4.125 15 C 0.168 3.832 16 H 0.056 0.944 17 N -0.716 5.716 18 C -0.234 4.234 19 H 0.073 0.927 20 C -0.068 4.068 21 N -0.961 5.961 22 Si 0.956 3.044 23 H -0.288 1.288 24 H -0.299 1.299 25 H -0.276 1.276 26 C -0.114 4.114 27 H 0.083 0.917 28 C 0.106 3.894 29 C 0.334 3.666 30 O -0.496 6.496 31 N -0.527 5.527 32 H 0.092 0.908 33 H 0.114 0.886 34 H 0.075 0.925 35 H 0.191 0.809 36 H 0.082 0.918 37 H 0.056 0.944 38 H 0.120 0.880 39 H 0.070 0.930 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.056 0.944 43 H 0.087 0.913 44 H 0.054 0.946 45 H 0.376 0.624 46 H 0.248 0.752 47 H 0.031 0.969 48 H 0.094 0.906 49 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.774 16.946 -4.303 27.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.021 3.979 3 C -0.188 4.188 4 C -0.001 4.001 5 C -0.176 4.176 6 C -0.218 4.218 7 C 0.377 3.623 8 O -0.473 6.473 9 N -0.339 5.339 10 C -0.014 4.014 11 C -0.102 4.102 12 H 0.132 0.868 13 C -0.142 4.142 14 C -0.164 4.164 15 C 0.058 3.942 16 H 0.074 0.926 17 N -0.356 5.356 18 C -0.366 4.366 19 H 0.091 0.909 20 C -0.261 4.261 21 N -0.612 5.612 22 Si 0.787 3.213 23 H -0.215 1.215 24 H -0.226 1.226 25 H -0.202 1.202 26 C -0.136 4.136 27 H 0.102 0.898 28 C -0.016 4.016 29 C 0.156 3.844 30 O -0.306 6.306 31 N -0.248 5.248 32 H 0.111 0.889 33 H 0.132 0.868 34 H 0.094 0.906 35 H 0.208 0.792 36 H 0.100 0.900 37 H 0.075 0.925 38 H 0.138 0.862 39 H 0.088 0.912 40 H 0.110 0.890 41 H 0.111 0.889 42 H 0.075 0.925 43 H 0.105 0.895 44 H 0.072 0.928 45 H 0.209 0.791 46 H 0.057 0.943 47 H 0.050 0.950 48 H 0.112 0.888 49 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -20.735 16.154 -3.004 26.456 hybrid contribution 1.954 -1.032 0.559 2.280 sum -18.781 15.123 -2.445 24.236 Atomic orbital electron populations 1.20935 0.85169 1.05328 1.04553 1.21983 0.98830 0.86685 0.90372 1.22194 0.92424 1.00966 1.03247 1.20590 0.94850 0.93538 0.91156 1.20987 0.99775 0.93000 1.03881 1.20729 0.92880 0.95670 1.12558 1.17806 0.86861 0.75427 0.82190 1.90768 1.70731 1.53210 1.32590 1.49289 1.08751 1.70058 1.05829 1.22901 0.98495 1.00279 0.79707 1.22978 0.93394 0.99439 0.94430 0.86783 1.22390 0.95576 1.00738 0.95498 1.22484 0.95831 1.01982 0.96078 1.21000 0.95675 0.84545 0.92941 0.92600 1.42579 1.22197 1.03496 1.67283 1.19523 0.97954 0.91753 1.27394 0.90938 1.25335 1.00926 0.96424 1.03367 1.69753 1.37021 1.00645 1.53773 0.85467 0.80811 0.76339 0.78708 1.21534 1.22582 1.20158 1.23115 0.97236 0.97730 0.95528 0.89838 1.22893 0.78392 1.03236 0.97056 1.19152 0.87007 0.84267 0.93995 1.84720 1.77060 1.33383 1.35430 1.67120 1.08290 1.32315 1.17110 0.88918 0.86794 0.90588 0.79213 0.89979 0.92511 0.86152 0.91176 0.89028 0.88886 0.92505 0.89481 0.92752 0.79136 0.94312 0.94981 0.88812 0.72390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.01 10.16 71.23 0.72 -0.28 16 2 C 0.16 2.96 6.78 42.58 0.29 3.25 16 3 C -0.17 -2.57 9.41 22.32 0.21 -2.36 16 4 C 0.01 0.14 5.95 -19.41 -0.12 0.03 16 5 C -0.12 -2.05 9.69 71.24 0.69 -1.36 16 6 C -0.21 -6.46 4.58 -19.91 -0.09 -6.55 16 7 C 0.59 22.49 5.53 86.69 0.48 22.97 16 8 O -0.59 -28.88 17.39 -3.99 -0.07 -28.95 16 9 N -0.61 -21.02 3.31 -809.47 -2.68 -23.69 16 10 C 0.11 2.76 6.48 86.68 0.56 3.32 16 11 C -0.08 -1.88 4.06 -8.66 -0.04 -1.92 16 12 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 13 C -0.10 -2.26 6.41 31.76 0.20 -2.05 16 14 C -0.13 -3.35 6.50 31.24 0.20 -3.14 16 15 C 0.17 5.84 3.53 45.50 0.16 6.00 16 16 H 0.06 2.01 7.91 -2.39 -0.02 1.99 16 17 N -0.72 -32.88 2.88 -320.52 -0.92 -33.80 16 18 C -0.23 -12.46 9.45 84.04 0.79 -11.66 16 19 H 0.07 3.76 7.74 -2.91 -0.02 3.74 16 20 C -0.07 -3.83 5.50 84.86 0.47 -3.36 16 21 N -0.96 -57.69 13.06 21.65 0.28 -57.40 16 22 Si 0.96 46.97 29.55 68.60 2.03 49.00 16 23 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 24 H -0.30 -14.99 7.11 99.48 0.71 -14.28 16 25 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 26 C -0.11 -3.52 3.88 -9.48 -0.04 -3.56 16 27 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 28 C 0.11 4.29 6.25 86.52 0.54 4.83 16 29 C 0.33 10.50 7.77 85.13 0.66 11.16 16 30 O -0.50 -16.85 13.01 -87.27 -1.14 -17.99 16 31 N -0.53 -14.33 10.28 -296.07 -3.04 -17.38 16 32 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.11 0.35 8.07 -2.39 -0.02 0.33 16 34 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.19 1.06 8.06 -2.91 -0.02 1.04 16 36 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 37 H 0.06 1.21 7.19 -2.39 -0.02 1.19 16 38 H 0.12 1.03 8.10 -2.39 -0.02 1.01 16 39 H 0.07 1.92 7.25 -2.38 -0.02 1.90 16 40 H 0.09 1.88 7.43 -2.39 -0.02 1.86 16 41 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.06 1.38 7.20 -2.38 -0.02 1.36 16 43 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.05 1.68 8.09 -2.39 -0.02 1.66 16 45 H 0.38 18.62 7.62 -92.71 -0.71 17.91 16 46 H 0.25 14.78 8.31 -92.71 -0.77 14.00 16 47 H 0.03 1.47 7.88 -2.38 -0.02 1.45 16 48 H 0.09 4.58 5.22 -2.38 -0.01 4.57 16 49 H 0.42 10.70 9.06 -74.06 -0.67 10.03 16 Total: -1.00 -79.99 394.84 -0.22 -80.21 By element: Atomic # 1 Polarization: 35.07 SS G_CDS: -0.39 Total: 34.69 kcal Atomic # 6 Polarization: 9.61 SS G_CDS: 5.70 Total: 15.31 kcal Atomic # 7 Polarization: -125.91 SS G_CDS: -6.36 Total: -132.28 kcal Atomic # 8 Polarization: -45.73 SS G_CDS: -1.21 Total: -46.94 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 2.03 Total: 49.00 kcal Total: -79.99 -0.22 -80.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026325743.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.606 kcal (2) G-P(sol) polarization free energy of solvation -79.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds