Wall clock time and date at job start Wed Apr 1 2020 05:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.40192 * 120.36708 * 2 1 4 4 C 1.35346 * 119.94966 * 179.77583 * 3 2 1 5 5 N 1.35765 * 120.69933 * 0.52571 * 4 3 2 6 6 C 1.46504 * 119.62453 * 179.71929 * 5 4 3 7 7 C 1.50695 * 109.47299 * 269.72947 * 6 5 4 8 8 O 1.21284 * 119.99958 * 359.97438 * 7 6 5 9 9 N 1.34772 * 120.00268 * 180.02562 * 7 6 5 10 10 C 1.49624 * 126.07045 * 359.97290 * 9 7 6 11 11 C 1.51523 * 102.67120 * 154.23751 * 10 9 7 12 12 H 1.09004 * 111.12305 * 288.23811 * 11 10 9 13 13 C 1.51324 * 123.51516 * 151.34916 * 11 10 9 14 14 C 1.56343 * 101.94228 * 208.26512 * 13 11 10 15 15 C 1.55996 * 105.77082 * 25.55932 * 14 13 11 16 16 H 1.09009 * 110.64406 * 248.27493 * 15 14 13 17 17 N 1.46501 * 110.52789 * 125.58966 * 15 14 13 18 18 C 1.36928 * 120.00234 * 90.43171 * 17 15 14 19 19 H 1.08002 * 120.00117 * 359.97438 * 18 17 15 20 20 C 1.38816 * 120.00126 * 180.02562 * 18 17 15 21 21 N 1.31621 * 119.99644 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00215 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47187 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47013 * 120.00256 * 22 20 18 25 25 H 1.48501 * 109.47069 * 239.99950 * 22 20 18 26 26 C 1.49703 * 103.99082 * 6.95951 * 15 14 13 27 27 H 1.08995 * 108.54664 * 76.79930 * 26 15 14 28 28 C 1.49293 * 126.07500 * 179.97438 * 9 7 6 29 29 C 1.34659 * 120.74796 * 359.45157 * 5 4 3 30 30 O 1.22066 * 119.98284 * 180.27394 * 29 5 4 31 31 C 1.36400 * 120.36485 * 180.02562 * 2 1 3 32 32 H 1.09005 * 109.46676 * 269.97810 * 1 2 3 33 33 H 1.08994 * 109.47070 * 29.97542 * 1 2 3 34 34 H 1.08997 * 109.47181 * 149.97931 * 1 2 3 35 35 H 1.07997 * 120.02646 * 0.02587 * 3 2 1 36 36 H 1.08002 * 119.65286 * 180.24662 * 4 3 2 37 37 H 1.09000 * 109.46944 * 149.73391 * 6 5 4 38 38 H 1.08993 * 109.46948 * 29.73255 * 6 5 4 39 39 H 1.09002 * 110.80542 * 272.58629 * 10 9 7 40 40 H 1.09004 * 110.80248 * 35.89264 * 10 9 7 41 41 H 1.08995 * 110.79393 * 90.13496 * 13 11 10 42 42 H 1.09001 * 111.03153 * 326.49581 * 13 11 10 43 43 H 1.09001 * 110.18372 * 266.48427 * 14 13 11 44 44 H 1.08993 * 110.18630 * 144.63481 * 14 13 11 45 45 H 0.97003 * 119.99361 * 270.43304 * 17 15 14 46 46 H 0.96999 * 119.99612 * 179.97438 * 21 20 18 47 47 H 1.08997 * 110.39275 * 292.42827 * 28 9 7 48 48 H 1.08999 * 110.39611 * 54.71856 * 28 9 7 49 49 H 1.07998 * 120.35218 * 359.97438 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2158 1.2096 0.0000 4 6 3.5692 1.1997 0.0046 5 7 4.2538 0.0274 -0.0015 6 6 5.7188 0.0442 -0.0026 7 6 6.2201 0.0500 -1.4237 8 8 5.4313 0.0405 -2.3450 9 7 7.5448 0.0647 -1.6709 10 6 8.6326 0.0772 -0.6437 11 6 9.7955 -0.5527 -1.3833 12 1 9.6363 -1.6212 -1.5285 13 6 11.2451 -0.2403 -1.0819 14 6 11.9248 -0.4903 -2.4675 15 6 10.8075 -0.2702 -3.5337 16 1 10.5485 -1.2114 -4.0188 17 7 11.2334 0.7182 -4.5276 18 6 11.8873 0.3124 -5.6602 19 1 12.0894 -0.7364 -5.8206 20 6 12.2913 1.2490 -6.6017 21 7 12.0454 2.5271 -6.4060 22 14 13.1840 0.6954 -8.1464 23 1 13.3357 -0.7817 -8.1280 24 1 12.4000 1.0972 -9.3420 25 1 14.5252 1.3308 -8.1976 26 6 9.6481 0.2483 -2.7412 27 1 9.8311 1.2964 -2.5042 28 6 8.1876 0.0715 -3.0184 29 6 3.6017 -1.1508 -0.0011 30 8 4.2312 -2.1965 -0.0016 31 6 2.1966 -1.1769 -0.0005 32 1 -0.3633 -0.0004 1.0277 33 1 -0.3633 0.8902 -0.5134 34 1 -0.3633 -0.8898 -0.5141 35 1 1.6822 2.1485 0.0004 36 1 4.1104 2.1344 0.0086 37 1 6.0927 -0.8416 0.5109 38 1 6.0722 0.9382 0.5110 39 1 8.8712 1.0979 -0.3448 40 1 8.3541 -0.5231 0.2225 41 1 11.6384 -0.9203 -0.3263 42 1 11.3651 0.7973 -0.7703 43 1 12.3016 -1.5116 -2.5228 44 1 12.7370 0.2200 -2.6216 45 1 11.0522 1.6602 -4.3833 46 1 12.3280 3.1816 -7.0637 47 1 8.0099 -0.8750 -3.5288 48 1 7.8093 0.9012 -3.6156 49 1 1.6683 -2.1189 -0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026368533.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:06 Heat of formation + Delta-G solvation = -1.073006 kcal Electronic energy + Delta-G solvation = -30063.533487 eV Core-core repulsion = 25991.951657 eV Total energy + Delta-G solvation = -4071.581831 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.72327 -40.48447 -38.64552 -37.21973 -35.56894 -35.32720 -33.44834 -31.13753 -30.94352 -30.04231 -29.25973 -28.52767 -27.01044 -25.42736 -23.96372 -23.38125 -22.93400 -21.81806 -20.29618 -19.63261 -19.19188 -17.79051 -17.75533 -17.41702 -16.97508 -16.32195 -16.25567 -15.62768 -15.33294 -14.90973 -14.56758 -14.48864 -14.26546 -14.01237 -13.93410 -13.78581 -13.67981 -13.05107 -12.94573 -12.76088 -12.66035 -12.46533 -12.37247 -12.00812 -11.92763 -11.88210 -11.58448 -11.48652 -11.09962 -10.84838 -10.81658 -10.53845 -10.36737 -10.17553 -10.14839 -10.13039 -9.83935 -9.73963 -9.60108 -8.94891 -8.74005 -8.20086 -7.00923 -5.80693 -3.09766 0.57206 1.65960 2.17669 2.44584 2.82553 3.41432 3.44349 3.47756 3.49517 4.01191 4.20671 4.28533 4.30015 4.43772 4.55308 4.68539 4.78232 4.82968 4.94308 4.97536 5.04718 5.18331 5.19467 5.24060 5.26989 5.34384 5.48074 5.52181 5.54526 5.67209 5.68216 5.78366 5.82961 5.87154 5.92437 5.98445 6.09398 6.10914 6.12603 6.26104 6.29898 6.32323 6.45007 6.58489 6.74958 6.82617 7.01234 7.36599 7.68504 7.84069 7.98263 8.37532 9.49172 10.05023 10.39583 11.41790 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018478 B = 0.002142 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.935307 B =13068.609040 C =13855.030043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.015 3.985 3 C -0.230 4.230 4 C 0.145 3.855 5 N -0.482 5.482 6 C 0.076 3.924 7 C 0.515 3.485 8 O -0.530 6.530 9 N -0.620 5.620 10 C 0.113 3.887 11 C -0.129 4.129 12 H 0.088 0.912 13 C -0.098 4.098 14 C -0.143 4.143 15 C 0.198 3.802 16 H 0.057 0.943 17 N -0.720 5.720 18 C -0.240 4.240 19 H 0.072 0.928 20 C -0.013 4.013 21 N -0.932 5.932 22 Si 0.906 3.094 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.292 1.292 26 C -0.119 4.119 27 H 0.075 0.925 28 C 0.136 3.864 29 C 0.522 3.478 30 O -0.552 6.552 31 C -0.248 4.248 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.145 0.855 36 H 0.161 0.839 37 H 0.129 0.871 38 H 0.120 0.880 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.060 0.940 42 H 0.066 0.934 43 H 0.055 0.945 44 H 0.074 0.926 45 H 0.384 0.616 46 H 0.255 0.745 47 H 0.070 0.930 48 H 0.077 0.923 49 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.435 -1.086 20.667 27.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.011 3.989 3 C -0.253 4.253 4 C 0.019 3.981 5 N -0.192 5.192 6 C -0.050 4.050 7 C 0.302 3.698 8 O -0.406 6.406 9 N -0.356 5.356 10 C -0.009 4.009 11 C -0.148 4.148 12 H 0.106 0.894 13 C -0.137 4.137 14 C -0.184 4.184 15 C 0.087 3.913 16 H 0.075 0.925 17 N -0.360 5.360 18 C -0.371 4.371 19 H 0.090 0.910 20 C -0.209 4.209 21 N -0.580 5.580 22 Si 0.737 3.263 23 H -0.205 1.205 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.140 4.140 27 H 0.093 0.907 28 C 0.015 3.985 29 C 0.325 3.675 30 O -0.434 6.434 31 C -0.270 4.270 32 H 0.099 0.901 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.163 0.837 36 H 0.178 0.822 37 H 0.147 0.853 38 H 0.138 0.862 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.079 0.921 42 H 0.085 0.915 43 H 0.074 0.926 44 H 0.093 0.907 45 H 0.218 0.782 46 H 0.065 0.935 47 H 0.088 0.912 48 H 0.095 0.905 49 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -17.447 -1.856 20.007 26.610 hybrid contribution 0.560 0.251 -0.892 1.083 sum -16.887 -1.605 19.114 25.556 Atomic orbital electron populations 1.20927 0.90347 1.03637 1.03009 1.20208 0.96783 0.92665 0.89197 1.20517 0.92317 0.98947 1.13510 1.21899 0.93650 0.89479 0.93122 1.45057 1.07194 1.07345 1.59651 1.21774 0.79603 1.07148 0.96452 1.20226 0.81355 0.77271 0.90987 1.90769 1.54249 1.49687 1.45870 1.49837 1.04290 1.72646 1.08820 1.21854 0.87170 1.01061 0.90772 1.22621 0.94524 1.00499 0.97182 0.89364 1.21799 0.92554 1.01119 0.98209 1.23798 1.00137 1.01256 0.93243 1.19946 0.88997 0.93575 0.88780 0.92542 1.42494 1.68444 1.05020 1.20022 1.19299 1.28731 0.92793 0.96273 0.91045 1.24751 1.01796 0.95344 0.99027 1.69668 1.52117 0.99885 1.36375 0.86130 0.79109 0.77666 0.83365 1.20523 1.21870 1.21893 1.22200 0.93676 1.01247 0.96831 0.90654 1.20995 0.91952 1.02696 0.82858 1.17092 0.89376 0.82412 0.78659 1.90960 1.69145 1.30271 1.53039 1.21909 0.92207 0.99580 1.13264 0.90133 0.90725 0.90802 0.83688 0.82156 0.85343 0.86168 0.90516 0.90519 0.92115 0.91481 0.92579 0.90682 0.78192 0.93550 0.91174 0.90503 0.83563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.64 10.03 36.01 0.36 -0.28 16 2 C 0.02 0.13 5.89 -104.55 -0.62 -0.49 16 3 C -0.23 -1.69 9.71 -39.88 -0.39 -2.08 16 4 C 0.15 1.18 10.28 -16.84 -0.17 1.00 16 5 N -0.48 -5.38 2.07 -121.07 -0.25 -5.63 16 6 C 0.08 0.75 4.87 -5.19 -0.03 0.72 16 7 C 0.52 7.27 7.94 -10.99 -0.09 7.19 16 8 O -0.53 -9.85 16.80 5.55 0.09 -9.75 16 9 N -0.62 -8.20 3.43 -171.57 -0.59 -8.79 16 10 C 0.11 1.12 6.46 -3.05 -0.02 1.10 16 11 C -0.13 -1.53 3.17 -89.27 -0.28 -1.81 16 12 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 13 C -0.10 -1.18 6.58 -25.78 -0.17 -1.35 16 14 C -0.14 -2.28 6.74 -23.33 -0.16 -2.44 16 15 C 0.20 3.68 3.45 -67.96 -0.23 3.44 16 16 H 0.06 1.10 8.09 -51.92 -0.42 0.68 16 17 N -0.72 -17.20 5.10 -53.45 -0.27 -17.47 16 18 C -0.24 -6.48 9.96 -15.06 -0.15 -6.63 16 19 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 20 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 21 N -0.93 -27.67 13.06 55.49 0.72 -26.95 16 22 Si 0.91 22.22 29.55 -169.99 -5.02 17.19 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 25 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 26 C -0.12 -1.83 2.23 -90.94 -0.20 -2.04 16 27 H 0.08 1.20 7.72 -51.93 -0.40 0.80 16 28 C 0.14 2.13 6.83 -4.12 -0.03 2.10 16 29 C 0.52 7.31 7.40 -15.45 -0.11 7.19 16 30 O -0.55 -9.74 16.64 4.86 0.08 -9.66 16 31 C -0.25 -2.79 9.65 -39.38 -0.38 -3.17 16 32 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.31 8.10 -51.93 -0.42 -0.11 16 34 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 35 H 0.15 0.66 8.06 -52.49 -0.42 0.23 16 36 H 0.16 0.76 8.03 -52.49 -0.42 0.33 16 37 H 0.13 1.26 7.15 -51.93 -0.37 0.89 16 38 H 0.12 0.66 8.01 -51.93 -0.42 0.24 16 39 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.08 0.58 7.57 -51.93 -0.39 0.19 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.07 1.36 7.98 -51.93 -0.41 0.95 16 45 H 0.38 9.79 7.68 -40.82 -0.31 9.48 16 46 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 47 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 48 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 49 H 0.15 1.50 8.06 -52.49 -0.42 1.07 16 LS Contribution 400.46 15.07 6.03 6.03 Total: -1.00 -36.56 400.46 -9.73 -46.29 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -7.76 Total: 6.73 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: -2.76 Total: 2.00 kcal Atomic # 7 Polarization: -58.45 SS G_CDS: -0.39 Total: -58.83 kcal Atomic # 8 Polarization: -19.59 SS G_CDS: 0.17 Total: -19.41 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -36.56 -9.73 -46.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026368533.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.217 kcal (2) G-P(sol) polarization free energy of solvation -36.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds