Wall clock time and date at job start Wed Apr 1 2020 05:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.40192 * 120.36708 * 2 1 4 4 C 1.35346 * 119.94966 * 179.77583 * 3 2 1 5 5 N 1.35765 * 120.69933 * 0.52571 * 4 3 2 6 6 C 1.46504 * 119.62453 * 179.71929 * 5 4 3 7 7 C 1.50695 * 109.47299 * 269.72947 * 6 5 4 8 8 O 1.21284 * 119.99958 * 359.97438 * 7 6 5 9 9 N 1.34772 * 120.00268 * 180.02562 * 7 6 5 10 10 C 1.49624 * 126.07045 * 359.97290 * 9 7 6 11 11 C 1.51523 * 102.67120 * 154.23751 * 10 9 7 12 12 H 1.09004 * 111.12305 * 288.23811 * 11 10 9 13 13 C 1.51324 * 123.51516 * 151.34916 * 11 10 9 14 14 C 1.56343 * 101.94228 * 208.26512 * 13 11 10 15 15 C 1.55996 * 105.77082 * 25.55932 * 14 13 11 16 16 H 1.09009 * 110.64406 * 248.27493 * 15 14 13 17 17 N 1.46501 * 110.52789 * 125.58966 * 15 14 13 18 18 C 1.36928 * 120.00234 * 90.43171 * 17 15 14 19 19 H 1.08002 * 120.00117 * 359.97438 * 18 17 15 20 20 C 1.38816 * 120.00126 * 180.02562 * 18 17 15 21 21 N 1.31621 * 119.99644 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00215 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47187 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47013 * 120.00256 * 22 20 18 25 25 H 1.48501 * 109.47069 * 239.99950 * 22 20 18 26 26 C 1.49703 * 103.99082 * 6.95951 * 15 14 13 27 27 H 1.08995 * 108.54664 * 76.79930 * 26 15 14 28 28 C 1.49293 * 126.07500 * 179.97438 * 9 7 6 29 29 C 1.34659 * 120.74796 * 359.45157 * 5 4 3 30 30 O 1.22066 * 119.98284 * 180.27394 * 29 5 4 31 31 C 1.36400 * 120.36485 * 180.02562 * 2 1 3 32 32 H 1.09005 * 109.46676 * 269.97810 * 1 2 3 33 33 H 1.08994 * 109.47070 * 29.97542 * 1 2 3 34 34 H 1.08997 * 109.47181 * 149.97931 * 1 2 3 35 35 H 1.07997 * 120.02646 * 0.02587 * 3 2 1 36 36 H 1.08002 * 119.65286 * 180.24662 * 4 3 2 37 37 H 1.09000 * 109.46944 * 149.73391 * 6 5 4 38 38 H 1.08993 * 109.46948 * 29.73255 * 6 5 4 39 39 H 1.09002 * 110.80542 * 272.58629 * 10 9 7 40 40 H 1.09004 * 110.80248 * 35.89264 * 10 9 7 41 41 H 1.08995 * 110.79393 * 90.13496 * 13 11 10 42 42 H 1.09001 * 111.03153 * 326.49581 * 13 11 10 43 43 H 1.09001 * 110.18372 * 266.48427 * 14 13 11 44 44 H 1.08993 * 110.18630 * 144.63481 * 14 13 11 45 45 H 0.97003 * 119.99361 * 270.43304 * 17 15 14 46 46 H 0.96999 * 119.99612 * 179.97438 * 21 20 18 47 47 H 1.08997 * 110.39275 * 292.42827 * 28 9 7 48 48 H 1.08999 * 110.39611 * 54.71856 * 28 9 7 49 49 H 1.07998 * 120.35218 * 359.97438 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2158 1.2096 0.0000 4 6 3.5692 1.1997 0.0046 5 7 4.2538 0.0274 -0.0015 6 6 5.7188 0.0442 -0.0026 7 6 6.2201 0.0500 -1.4237 8 8 5.4313 0.0405 -2.3450 9 7 7.5448 0.0647 -1.6709 10 6 8.6326 0.0772 -0.6437 11 6 9.7955 -0.5527 -1.3833 12 1 9.6363 -1.6212 -1.5285 13 6 11.2451 -0.2403 -1.0819 14 6 11.9248 -0.4903 -2.4675 15 6 10.8075 -0.2702 -3.5337 16 1 10.5485 -1.2114 -4.0188 17 7 11.2334 0.7182 -4.5276 18 6 11.8873 0.3124 -5.6602 19 1 12.0894 -0.7364 -5.8206 20 6 12.2913 1.2490 -6.6017 21 7 12.0454 2.5271 -6.4060 22 14 13.1840 0.6954 -8.1464 23 1 13.3357 -0.7817 -8.1280 24 1 12.4000 1.0972 -9.3420 25 1 14.5252 1.3308 -8.1976 26 6 9.6481 0.2483 -2.7412 27 1 9.8311 1.2964 -2.5042 28 6 8.1876 0.0715 -3.0184 29 6 3.6017 -1.1508 -0.0011 30 8 4.2312 -2.1965 -0.0016 31 6 2.1966 -1.1769 -0.0005 32 1 -0.3633 -0.0004 1.0277 33 1 -0.3633 0.8902 -0.5134 34 1 -0.3633 -0.8898 -0.5141 35 1 1.6822 2.1485 0.0004 36 1 4.1104 2.1344 0.0086 37 1 6.0927 -0.8416 0.5109 38 1 6.0722 0.9382 0.5110 39 1 8.8712 1.0979 -0.3448 40 1 8.3541 -0.5231 0.2225 41 1 11.6384 -0.9203 -0.3263 42 1 11.3651 0.7973 -0.7703 43 1 12.3016 -1.5116 -2.5228 44 1 12.7370 0.2200 -2.6216 45 1 11.0522 1.6602 -4.3833 46 1 12.3280 3.1816 -7.0637 47 1 8.0099 -0.8750 -3.5288 48 1 7.8093 0.9012 -3.6156 49 1 1.6683 -2.1189 -0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026368533.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:05 Heat of formation + Delta-G solvation = -25.404764 kcal Electronic energy + Delta-G solvation = -30064.588592 eV Core-core repulsion = 25991.951657 eV Total energy + Delta-G solvation = -4072.636935 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.56908 -41.60502 -39.81389 -38.11789 -36.86332 -36.23903 -35.12855 -32.69899 -31.98730 -30.92473 -30.18332 -29.79161 -27.85008 -26.89268 -24.91323 -24.67335 -24.32650 -22.59415 -21.44808 -20.65373 -20.53187 -19.15912 -18.62914 -18.54000 -18.24887 -17.44322 -17.04263 -16.70490 -16.61638 -16.32502 -15.67100 -15.58068 -15.40799 -15.20973 -15.05477 -14.98214 -14.43234 -14.17891 -13.99836 -13.78945 -13.62501 -13.38139 -13.17984 -13.17297 -13.06988 -12.97664 -12.85756 -12.65978 -12.48056 -12.46766 -12.20795 -12.10983 -11.85404 -11.60975 -11.37876 -11.29223 -11.12244 -11.02290 -10.92300 -10.59404 -9.86117 -9.01351 -8.99397 -7.95867 -5.23286 -0.13948 0.90292 1.33894 1.39918 1.45180 1.46200 1.55549 1.87625 2.54455 2.63339 2.93458 3.35215 3.38460 3.58698 3.65685 3.71387 3.85818 3.90510 4.00495 4.04850 4.12627 4.23902 4.27817 4.32550 4.37690 4.42074 4.49431 4.56461 4.63906 4.67694 4.74827 4.77655 4.83127 4.88049 4.91062 4.95689 4.97444 5.09743 5.15996 5.23448 5.24213 5.35881 5.47296 5.48026 5.52187 5.62500 5.64735 6.03583 6.27073 6.33101 6.88124 6.96705 7.33179 8.09325 8.32027 9.27575 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018478 B = 0.002142 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.935307 B =13068.609040 C =13855.030043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.033 3.967 3 C -0.230 4.230 4 C 0.138 3.862 5 N -0.485 5.485 6 C 0.082 3.918 7 C 0.509 3.491 8 O -0.586 6.586 9 N -0.617 5.617 10 C 0.115 3.885 11 C -0.108 4.108 12 H 0.085 0.915 13 C -0.082 4.082 14 C -0.138 4.138 15 C 0.187 3.813 16 H 0.040 0.960 17 N -0.732 5.732 18 C -0.236 4.236 19 H 0.073 0.927 20 C -0.076 4.076 21 N -0.968 5.968 22 Si 0.968 3.032 23 H -0.268 1.268 24 H -0.297 1.297 25 H -0.292 1.292 26 C -0.123 4.123 27 H 0.073 0.927 28 C 0.138 3.862 29 C 0.502 3.498 30 O -0.611 6.611 31 C -0.292 4.292 32 H 0.100 0.900 33 H 0.093 0.907 34 H 0.071 0.929 35 H 0.183 0.817 36 H 0.202 0.798 37 H 0.132 0.868 38 H 0.177 0.823 39 H 0.104 0.896 40 H 0.114 0.886 41 H 0.091 0.909 42 H 0.078 0.922 43 H 0.062 0.938 44 H 0.050 0.950 45 H 0.373 0.627 46 H 0.250 0.750 47 H 0.048 0.952 48 H 0.052 0.948 49 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.087 0.058 23.684 29.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.029 3.971 3 C -0.252 4.252 4 C 0.012 3.988 5 N -0.194 5.194 6 C -0.043 4.043 7 C 0.298 3.702 8 O -0.466 6.466 9 N -0.351 5.351 10 C -0.005 4.005 11 C -0.128 4.128 12 H 0.103 0.897 13 C -0.120 4.120 14 C -0.179 4.179 15 C 0.078 3.922 16 H 0.058 0.942 17 N -0.372 5.372 18 C -0.368 4.368 19 H 0.091 0.909 20 C -0.269 4.269 21 N -0.619 5.619 22 Si 0.798 3.202 23 H -0.192 1.192 24 H -0.224 1.224 25 H -0.219 1.219 26 C -0.143 4.143 27 H 0.092 0.908 28 C 0.016 3.984 29 C 0.308 3.692 30 O -0.499 6.499 31 C -0.313 4.313 32 H 0.118 0.882 33 H 0.112 0.888 34 H 0.090 0.910 35 H 0.200 0.800 36 H 0.218 0.782 37 H 0.149 0.851 38 H 0.194 0.806 39 H 0.122 0.878 40 H 0.132 0.868 41 H 0.110 0.890 42 H 0.097 0.903 43 H 0.081 0.919 44 H 0.069 0.931 45 H 0.205 0.795 46 H 0.059 0.941 47 H 0.067 0.933 48 H 0.070 0.930 49 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -18.096 -0.722 23.092 29.346 hybrid contribution 0.667 -0.083 -1.835 1.954 sum -17.429 -0.805 21.257 27.500 Atomic orbital electron populations 1.21041 0.87941 1.04504 1.04432 1.20653 0.98564 0.92086 0.85811 1.21067 0.92420 0.99859 1.11832 1.22697 0.94478 0.89674 0.91929 1.45106 1.07898 1.07549 1.58831 1.21982 0.79035 1.09909 0.93384 1.21071 0.80933 0.75841 0.92360 1.90739 1.55671 1.52225 1.47974 1.49865 1.04978 1.71937 1.08364 1.22149 0.84669 1.03250 0.90401 1.22615 0.95541 0.99962 0.94664 0.89683 1.21707 0.91586 1.02704 0.96042 1.23592 0.98439 1.00963 0.94884 1.20214 0.91419 0.91783 0.88759 0.94189 1.42661 1.68497 1.05425 1.20582 1.19640 1.27409 0.92773 0.96991 0.90913 1.25502 1.03665 0.95559 1.02127 1.69808 1.54016 1.00788 1.37291 0.85147 0.77636 0.77781 0.79673 1.19239 1.22418 1.21915 1.21942 0.92211 1.01609 0.98502 0.90839 1.20737 0.92631 1.00550 0.84474 1.17524 0.90343 0.82649 0.78694 1.90898 1.70237 1.32215 1.56578 1.21902 0.91539 1.00831 1.17063 0.88191 0.88826 0.90978 0.80003 0.78164 0.85062 0.80581 0.87791 0.86790 0.89002 0.90323 0.91877 0.93092 0.79454 0.94122 0.93313 0.92975 0.84175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.99 10.03 71.24 0.71 -0.27 16 2 C 0.03 0.50 5.89 -19.82 -0.12 0.38 16 3 C -0.23 -2.62 9.71 22.08 0.21 -2.41 16 4 C 0.14 1.79 10.28 83.42 0.86 2.65 16 5 N -0.48 -10.10 2.07 -655.07 -1.36 -11.46 16 6 C 0.08 1.40 4.87 85.63 0.42 1.82 16 7 C 0.51 13.90 7.94 87.66 0.70 14.60 16 8 O -0.59 -22.33 16.80 -3.04 -0.05 -22.38 16 9 N -0.62 -15.49 3.43 -815.10 -2.79 -18.29 16 10 C 0.12 1.82 6.46 85.29 0.55 2.37 16 11 C -0.11 -2.28 3.17 -9.92 -0.03 -2.31 16 12 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 13 C -0.08 -1.68 6.58 31.21 0.21 -1.48 16 14 C -0.14 -4.26 6.74 32.80 0.22 -4.04 16 15 C 0.19 7.07 3.45 44.97 0.16 7.22 16 16 H 0.04 1.61 8.09 -2.38 -0.02 1.60 16 17 N -0.73 -36.12 5.10 -323.02 -1.65 -37.76 16 18 C -0.24 -13.06 9.96 84.04 0.84 -12.23 16 19 H 0.07 3.92 7.83 -2.91 -0.02 3.89 16 20 C -0.08 -4.39 5.50 84.86 0.47 -3.93 16 21 N -0.97 -59.11 13.06 21.65 0.28 -58.83 16 22 Si 0.97 46.61 29.55 68.60 2.03 48.63 16 23 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 24 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 25 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 26 C -0.12 -3.74 2.23 -11.00 -0.02 -3.77 16 27 H 0.07 2.30 7.72 -2.39 -0.02 2.28 16 28 C 0.14 4.49 6.83 84.78 0.58 5.06 16 29 C 0.50 14.44 7.40 84.82 0.63 15.07 16 30 O -0.61 -22.83 16.64 -5.53 -0.09 -22.93 16 31 C -0.29 -6.77 9.65 22.40 0.22 -6.55 16 32 H 0.10 0.48 8.14 -2.38 -0.02 0.47 16 33 H 0.09 0.44 8.10 -2.39 -0.02 0.42 16 34 H 0.07 0.64 8.09 -2.39 -0.02 0.62 16 35 H 0.18 0.71 8.06 -2.91 -0.02 0.69 16 36 H 0.20 0.88 8.03 -2.91 -0.02 0.85 16 37 H 0.13 2.27 7.15 -2.39 -0.02 2.25 16 38 H 0.18 0.96 8.01 -2.39 -0.02 0.94 16 39 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.11 1.08 7.57 -2.39 -0.02 1.07 16 41 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.05 1.83 7.98 -2.39 -0.02 1.81 16 45 H 0.37 19.76 7.68 -92.71 -0.71 19.05 16 46 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 47 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 48 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 49 H 0.14 3.17 8.06 -2.91 -0.02 3.15 16 Total: -1.00 -87.93 400.46 3.19 -84.73 By element: Atomic # 1 Polarization: 25.84 SS G_CDS: 0.24 Total: 26.07 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: 6.59 Total: 12.20 kcal Atomic # 7 Polarization: -120.83 SS G_CDS: -5.52 Total: -126.34 kcal Atomic # 8 Polarization: -45.16 SS G_CDS: -0.14 Total: -45.31 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.63 kcal Total: -87.93 3.19 -84.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026368533.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.328 kcal (2) G-P(sol) polarization free energy of solvation -87.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds