Wall clock time and date at job start Wed Apr 1 2020 05:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.40190 * 120.37260 * 2 1 4 4 C 1.35342 * 119.95249 * 179.97438 * 3 2 1 5 5 N 1.35769 * 120.69972 * 0.02562 * 4 3 2 6 6 C 1.46498 * 119.61954 * 179.97438 * 5 4 3 7 7 C 1.50705 * 109.47327 * 90.00208 * 6 5 4 8 8 O 1.21279 * 119.99653 * 359.97438 * 7 6 5 9 9 N 1.34773 * 119.99865 * 179.97438 * 7 6 5 10 10 C 1.48340 * 128.20007 * 359.97438 * 9 7 6 11 11 C 1.54462 * 104.30855 * 138.23100 * 10 9 7 12 12 H 1.08997 * 111.93510 * 262.71676 * 11 10 9 13 13 C 1.54150 * 108.79502 * 138.54363 * 11 10 9 14 14 C 1.54834 * 104.34549 * 224.04728 * 13 11 10 15 15 C 1.54833 * 102.73807 * 38.22865 * 14 13 11 16 16 H 1.08995 * 110.46197 * 80.48587 * 15 14 13 17 17 N 1.46503 * 110.45742 * 202.92872 * 15 14 13 18 18 C 1.36925 * 120.00034 * 273.54320 * 17 15 14 19 19 H 1.08002 * 120.00598 * 359.97438 * 18 17 15 20 20 C 1.38819 * 119.99952 * 180.02562 * 18 17 15 21 21 N 1.31610 * 120.00186 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00011 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.46957 * 59.99563 * 22 20 18 24 24 H 1.48500 * 109.47347 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47009 * 300.00014 * 22 20 18 26 26 C 1.53826 * 104.39317 * 321.77661 * 15 14 13 27 27 H 1.08996 * 112.55936 * 260.69164 * 26 15 14 28 28 C 1.48343 * 128.19146 * 179.97438 * 9 7 6 29 29 C 1.34658 * 120.75096 * 0.24955 * 5 4 3 30 30 O 1.22055 * 119.98420 * 179.70974 * 29 5 4 31 31 C 1.36403 * 120.36143 * 179.97438 * 2 1 3 32 32 H 1.08998 * 109.46909 * 89.99332 * 1 2 3 33 33 H 1.09001 * 109.47430 * 209.99938 * 1 2 3 34 34 H 1.09000 * 109.46642 * 329.99834 * 1 2 3 35 35 H 1.08007 * 120.02469 * 359.97438 * 3 2 1 36 36 H 1.08002 * 119.65188 * 180.02562 * 4 3 2 37 37 H 1.08997 * 109.47355 * 329.99641 * 6 5 4 38 38 H 1.09003 * 109.46785 * 209.99557 * 6 5 4 39 39 H 1.09003 * 110.46221 * 256.93830 * 10 9 7 40 40 H 1.08995 * 110.46272 * 19.52293 * 10 9 7 41 41 H 1.08995 * 110.45370 * 342.76067 * 13 11 10 42 42 H 1.08996 * 110.45599 * 105.20209 * 13 11 10 43 43 H 1.09004 * 110.75562 * 156.53679 * 14 13 11 44 44 H 1.08999 * 110.76031 * 279.73025 * 14 13 11 45 45 H 0.97007 * 119.99677 * 93.54603 * 17 15 14 46 46 H 0.96998 * 120.00660 * 180.02562 * 21 20 18 47 47 H 1.09002 * 110.46781 * 340.47329 * 28 9 7 48 48 H 1.08997 * 110.46296 * 102.93208 * 28 9 7 49 49 H 1.07993 * 120.35262 * 0.04571 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2159 1.2095 0.0000 4 6 3.5693 1.1996 0.0005 5 7 4.2538 0.0271 0.0005 6 6 5.7187 0.0440 0.0005 7 6 6.2211 0.0497 1.4214 8 8 5.4330 0.0411 2.3432 9 7 7.5461 0.0645 1.6676 10 6 8.6609 0.0762 0.6890 11 6 9.6731 1.0847 1.2756 12 1 9.5690 2.0731 0.8281 13 6 11.0964 0.5202 1.0978 14 6 11.7880 0.7882 2.4570 15 6 10.6545 0.5167 3.4761 16 1 10.5469 -0.5539 3.6501 17 7 10.9208 1.2148 4.7363 18 6 11.6943 0.6212 5.6976 19 1 12.1078 -0.3619 5.5272 20 6 11.9463 1.2825 6.8919 21 7 11.4421 2.4802 7.0999 22 14 13.0021 0.4729 8.2031 23 1 14.3538 0.2005 7.6517 24 1 13.1180 1.3785 9.3743 25 1 12.3735 -0.8043 8.6259 26 6 9.3917 1.0808 2.8029 27 1 9.1285 2.0721 3.1717 28 6 8.2348 0.0728 2.9814 29 6 3.6016 -1.1510 -0.0050 30 8 4.2311 -2.1967 -0.0103 31 6 2.1965 -1.1770 0.0005 32 1 -0.3633 0.0001 -1.0277 33 1 -0.3634 -0.8900 0.5138 34 1 -0.3632 0.8900 0.5139 35 1 1.6823 2.1486 -0.0004 36 1 4.1105 2.1342 0.0009 37 1 6.0718 0.9380 -0.5133 38 1 6.0922 -0.8418 -0.5132 39 1 9.1104 -0.9138 0.6117 40 1 8.3086 0.4131 -0.2859 41 1 11.0591 -0.5498 0.8938 42 1 11.6158 1.0425 0.2944 43 1 12.6186 0.0991 2.6103 44 1 12.1287 1.8216 2.5200 45 1 10.5492 2.0976 4.8896 46 1 11.6184 2.9425 7.9342 47 1 7.5556 0.4071 3.7657 48 1 8.6251 -0.9181 3.2133 49 1 1.6682 -2.1189 0.0002 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026368535.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:11 Heat of formation + Delta-G solvation = -15.831059 kcal Electronic energy + Delta-G solvation = -30113.047232 eV Core-core repulsion = 26040.825444 eV Total energy + Delta-G solvation = -4072.221788 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.72024 -40.22704 -38.48295 -37.22469 -35.52272 -35.22114 -33.39107 -31.14094 -30.95670 -29.98780 -29.22305 -28.44988 -27.07450 -25.04679 -23.96756 -23.76177 -22.88180 -21.83688 -20.36618 -19.39208 -19.13091 -17.79842 -17.75621 -17.50424 -16.97342 -16.27573 -16.11363 -15.71625 -15.29268 -15.09612 -14.51154 -14.43768 -14.32896 -14.16948 -13.86286 -13.61941 -13.30433 -13.12452 -13.02886 -12.84752 -12.58996 -12.45730 -12.29110 -12.04552 -11.90874 -11.81929 -11.70951 -11.20604 -10.96924 -10.78889 -10.72921 -10.44003 -10.40052 -10.29492 -10.25612 -10.15174 -9.99744 -9.74138 -9.65984 -8.89951 -8.78905 -8.20267 -6.97582 -5.78743 -3.07664 0.57167 1.65821 2.18346 2.43171 2.88645 3.43147 3.45460 3.48026 3.48575 4.18385 4.21045 4.29003 4.42745 4.49760 4.59100 4.67923 4.76292 4.79090 4.82743 4.94362 5.04580 5.18318 5.18658 5.26029 5.35627 5.37045 5.48182 5.51351 5.56837 5.68078 5.69911 5.74203 5.81969 5.87073 5.90868 5.99602 6.10924 6.11076 6.18577 6.24103 6.27478 6.36029 6.50902 6.60080 6.76415 6.82283 7.00768 7.45049 7.68229 7.83723 7.98374 8.39661 9.50890 10.07830 10.41823 11.43697 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017865 B = 0.002177 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.934977 B =12857.249523 C =13604.026370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.015 3.985 3 C -0.230 4.230 4 C 0.145 3.855 5 N -0.482 5.482 6 C 0.076 3.924 7 C 0.520 3.480 8 O -0.529 6.529 9 N -0.621 5.621 10 C 0.101 3.899 11 C -0.101 4.101 12 H 0.086 0.914 13 C -0.117 4.117 14 C -0.142 4.142 15 C 0.184 3.816 16 H 0.055 0.945 17 N -0.720 5.720 18 C -0.241 4.241 19 H 0.070 0.930 20 C -0.012 4.012 21 N -0.933 5.933 22 Si 0.906 3.094 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C -0.104 4.104 27 H 0.089 0.911 28 C 0.115 3.885 29 C 0.522 3.478 30 O -0.552 6.552 31 C -0.248 4.248 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.146 0.854 36 H 0.161 0.839 37 H 0.120 0.880 38 H 0.129 0.871 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.064 0.936 42 H 0.060 0.940 43 H 0.059 0.941 44 H 0.066 0.934 45 H 0.384 0.616 46 H 0.256 0.744 47 H 0.082 0.918 48 H 0.077 0.923 49 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.255 -0.236 -22.149 27.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.012 3.988 3 C -0.253 4.253 4 C 0.019 3.981 5 N -0.193 5.193 6 C -0.050 4.050 7 C 0.307 3.693 8 O -0.405 6.405 9 N -0.355 5.355 10 C -0.022 4.022 11 C -0.121 4.121 12 H 0.104 0.896 13 C -0.156 4.156 14 C -0.182 4.182 15 C 0.073 3.927 16 H 0.073 0.927 17 N -0.361 5.361 18 C -0.372 4.372 19 H 0.088 0.912 20 C -0.209 4.209 21 N -0.581 5.581 22 Si 0.737 3.263 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.212 1.212 26 C -0.124 4.124 27 H 0.108 0.892 28 C -0.007 4.007 29 C 0.325 3.675 30 O -0.434 6.434 31 C -0.270 4.270 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.163 0.837 36 H 0.178 0.822 37 H 0.138 0.862 38 H 0.147 0.853 39 H 0.098 0.902 40 H 0.092 0.908 41 H 0.083 0.917 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.085 0.915 45 H 0.218 0.782 46 H 0.066 0.934 47 H 0.101 0.899 48 H 0.095 0.905 49 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -16.289 -1.050 -21.526 27.014 hybrid contribution 0.620 0.048 0.874 1.073 sum -15.669 -1.002 -20.651 25.942 Atomic orbital electron populations 1.20928 0.90339 1.03649 1.03009 1.20210 0.96789 0.92661 0.89177 1.20520 0.92312 0.98956 1.13483 1.21897 0.93653 0.89471 0.93118 1.45053 1.07162 1.07356 1.59686 1.21757 0.79645 1.07135 0.96445 1.20178 0.81098 0.77061 0.90961 1.90771 1.54156 1.49764 1.45846 1.49179 1.03952 1.72285 1.10103 1.22841 0.87041 1.00215 0.92062 1.22776 0.94932 0.98396 0.95983 0.89578 1.22416 0.94257 1.00157 0.98750 1.23217 0.99471 1.01771 0.93789 1.21058 0.89695 0.95604 0.86346 0.92681 1.42429 1.60597 1.19705 1.13334 1.19177 1.23173 1.00038 0.94783 0.91226 1.24742 1.01129 0.96767 0.98215 1.69638 1.49127 1.13386 1.25905 0.86283 0.80248 0.78295 0.81451 1.21274 1.21719 1.21249 1.23008 0.95834 0.99476 0.94115 0.89248 1.22666 0.93569 0.99783 0.84633 1.17094 0.89381 0.82403 0.78657 1.90955 1.69149 1.30269 1.53053 1.21910 0.92197 0.99587 1.13266 0.90129 0.90796 0.90718 0.83674 0.82154 0.86190 0.85333 0.90172 0.90788 0.91688 0.92155 0.92181 0.91514 0.78191 0.93438 0.89916 0.90464 0.83555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.65 10.03 36.01 0.36 -0.29 16 2 C 0.02 0.13 5.89 -104.55 -0.62 -0.49 16 3 C -0.23 -1.70 9.71 -39.88 -0.39 -2.09 16 4 C 0.15 1.18 10.28 -16.84 -0.17 1.01 16 5 N -0.48 -5.39 2.07 -121.06 -0.25 -5.64 16 6 C 0.08 0.75 4.80 -5.19 -0.02 0.72 16 7 C 0.52 7.34 7.99 -10.98 -0.09 7.25 16 8 O -0.53 -9.88 16.71 5.56 0.09 -9.79 16 9 N -0.62 -8.12 3.31 -168.89 -0.56 -8.68 16 10 C 0.10 0.98 6.46 -2.26 -0.01 0.97 16 11 C -0.10 -1.14 3.96 -88.03 -0.35 -1.49 16 12 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 13 C -0.12 -1.35 6.36 -25.16 -0.16 -1.51 16 14 C -0.14 -2.27 6.57 -24.80 -0.16 -2.43 16 15 C 0.18 3.37 3.03 -66.53 -0.20 3.17 16 16 H 0.06 1.05 7.15 -51.93 -0.37 0.67 16 17 N -0.72 -17.30 5.22 -52.07 -0.27 -17.57 16 18 C -0.24 -6.51 9.97 -15.06 -0.15 -6.66 16 19 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 20 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 21 N -0.93 -27.85 13.06 55.49 0.72 -27.12 16 22 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 26 C -0.10 -1.58 3.62 -88.20 -0.32 -1.90 16 27 H 0.09 1.48 7.80 -51.93 -0.41 1.08 16 28 C 0.12 1.78 6.58 -2.25 -0.01 1.77 16 29 C 0.52 7.31 7.40 -15.44 -0.11 7.20 16 30 O -0.55 -9.74 16.63 4.87 0.08 -9.66 16 31 C -0.25 -2.80 9.65 -39.38 -0.38 -3.18 16 32 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 34 H 0.07 0.32 8.10 -51.93 -0.42 -0.11 16 35 H 0.15 0.66 8.06 -52.48 -0.42 0.24 16 36 H 0.16 0.77 8.04 -52.49 -0.42 0.35 16 37 H 0.12 0.65 7.86 -51.93 -0.41 0.25 16 38 H 0.13 1.26 7.38 -51.93 -0.38 0.87 16 39 H 0.08 0.75 7.20 -51.93 -0.37 0.37 16 40 H 0.07 0.48 7.32 -51.93 -0.38 0.10 16 41 H 0.06 0.68 7.18 -51.93 -0.37 0.31 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 45 H 0.38 9.87 7.58 -40.82 -0.31 9.56 16 46 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 47 H 0.08 1.47 7.88 -51.93 -0.41 1.06 16 48 H 0.08 1.21 7.21 -51.93 -0.37 0.84 16 49 H 0.15 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 397.45 15.07 5.99 5.99 Total: -1.00 -36.82 397.45 -9.66 -46.49 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -7.56 Total: 7.12 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: -2.89 Total: 1.61 kcal Atomic # 7 Polarization: -58.65 SS G_CDS: -0.36 Total: -59.01 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: 0.17 Total: -19.44 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -36.82 -9.66 -46.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026368535.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.655 kcal (2) G-P(sol) polarization free energy of solvation -36.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds