Wall clock time and date at job start Wed Apr 1 2020 05:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.40190 * 120.37260 * 2 1 4 4 C 1.35342 * 119.95249 * 179.97438 * 3 2 1 5 5 N 1.35769 * 120.69972 * 0.02562 * 4 3 2 6 6 C 1.46498 * 119.61954 * 179.97438 * 5 4 3 7 7 C 1.50705 * 109.47327 * 90.00208 * 6 5 4 8 8 O 1.21279 * 119.99653 * 359.97438 * 7 6 5 9 9 N 1.34773 * 119.99865 * 179.97438 * 7 6 5 10 10 C 1.48340 * 128.20007 * 359.97438 * 9 7 6 11 11 C 1.54462 * 104.30855 * 138.23100 * 10 9 7 12 12 H 1.08997 * 111.93510 * 262.71676 * 11 10 9 13 13 C 1.54150 * 108.79502 * 138.54363 * 11 10 9 14 14 C 1.54834 * 104.34549 * 224.04728 * 13 11 10 15 15 C 1.54833 * 102.73807 * 38.22865 * 14 13 11 16 16 H 1.08995 * 110.46197 * 80.48587 * 15 14 13 17 17 N 1.46503 * 110.45742 * 202.92872 * 15 14 13 18 18 C 1.36925 * 120.00034 * 273.54320 * 17 15 14 19 19 H 1.08002 * 120.00598 * 359.97438 * 18 17 15 20 20 C 1.38819 * 119.99952 * 180.02562 * 18 17 15 21 21 N 1.31610 * 120.00186 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00011 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.46957 * 59.99563 * 22 20 18 24 24 H 1.48500 * 109.47347 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47009 * 300.00014 * 22 20 18 26 26 C 1.53826 * 104.39317 * 321.77661 * 15 14 13 27 27 H 1.08996 * 112.55936 * 260.69164 * 26 15 14 28 28 C 1.48343 * 128.19146 * 179.97438 * 9 7 6 29 29 C 1.34658 * 120.75096 * 0.24955 * 5 4 3 30 30 O 1.22055 * 119.98420 * 179.70974 * 29 5 4 31 31 C 1.36403 * 120.36143 * 179.97438 * 2 1 3 32 32 H 1.08998 * 109.46909 * 89.99332 * 1 2 3 33 33 H 1.09001 * 109.47430 * 209.99938 * 1 2 3 34 34 H 1.09000 * 109.46642 * 329.99834 * 1 2 3 35 35 H 1.08007 * 120.02469 * 359.97438 * 3 2 1 36 36 H 1.08002 * 119.65188 * 180.02562 * 4 3 2 37 37 H 1.08997 * 109.47355 * 329.99641 * 6 5 4 38 38 H 1.09003 * 109.46785 * 209.99557 * 6 5 4 39 39 H 1.09003 * 110.46221 * 256.93830 * 10 9 7 40 40 H 1.08995 * 110.46272 * 19.52293 * 10 9 7 41 41 H 1.08995 * 110.45370 * 342.76067 * 13 11 10 42 42 H 1.08996 * 110.45599 * 105.20209 * 13 11 10 43 43 H 1.09004 * 110.75562 * 156.53679 * 14 13 11 44 44 H 1.08999 * 110.76031 * 279.73025 * 14 13 11 45 45 H 0.97007 * 119.99677 * 93.54603 * 17 15 14 46 46 H 0.96998 * 120.00660 * 180.02562 * 21 20 18 47 47 H 1.09002 * 110.46781 * 340.47329 * 28 9 7 48 48 H 1.08997 * 110.46296 * 102.93208 * 28 9 7 49 49 H 1.07993 * 120.35262 * 0.04571 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2159 1.2095 0.0000 4 6 3.5693 1.1996 0.0005 5 7 4.2538 0.0271 0.0005 6 6 5.7187 0.0440 0.0005 7 6 6.2211 0.0497 1.4214 8 8 5.4330 0.0411 2.3432 9 7 7.5461 0.0645 1.6676 10 6 8.6609 0.0762 0.6890 11 6 9.6731 1.0847 1.2756 12 1 9.5690 2.0731 0.8281 13 6 11.0964 0.5202 1.0978 14 6 11.7880 0.7882 2.4570 15 6 10.6545 0.5167 3.4761 16 1 10.5469 -0.5539 3.6501 17 7 10.9208 1.2148 4.7363 18 6 11.6943 0.6212 5.6976 19 1 12.1078 -0.3619 5.5272 20 6 11.9463 1.2825 6.8919 21 7 11.4421 2.4802 7.0999 22 14 13.0021 0.4729 8.2031 23 1 14.3538 0.2005 7.6517 24 1 13.1180 1.3785 9.3743 25 1 12.3735 -0.8043 8.6259 26 6 9.3917 1.0808 2.8029 27 1 9.1285 2.0721 3.1717 28 6 8.2348 0.0728 2.9814 29 6 3.6016 -1.1510 -0.0050 30 8 4.2311 -2.1967 -0.0103 31 6 2.1965 -1.1770 0.0005 32 1 -0.3633 0.0001 -1.0277 33 1 -0.3634 -0.8900 0.5138 34 1 -0.3632 0.8900 0.5139 35 1 1.6823 2.1486 -0.0004 36 1 4.1105 2.1342 0.0009 37 1 6.0718 0.9380 -0.5133 38 1 6.0922 -0.8418 -0.5132 39 1 9.1104 -0.9138 0.6117 40 1 8.3086 0.4131 -0.2859 41 1 11.0591 -0.5498 0.8938 42 1 11.6158 1.0425 0.2944 43 1 12.6186 0.0991 2.6103 44 1 12.1287 1.8216 2.5200 45 1 10.5492 2.0976 4.8896 46 1 11.6184 2.9425 7.9342 47 1 7.5556 0.4071 3.7657 48 1 8.6251 -0.9181 3.2133 49 1 1.6682 -2.1189 0.0002 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026368535.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:09 Heat of formation + Delta-G solvation = -40.575853 kcal Electronic energy + Delta-G solvation = -30114.120247 eV Core-core repulsion = 26040.825444 eV Total energy + Delta-G solvation = -4073.294802 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -42.55823 -41.32288 -39.65605 -38.12362 -36.73056 -36.24188 -35.02970 -32.72514 -31.90411 -30.89631 -30.19938 -29.71984 -27.88641 -26.58829 -24.85691 -24.67571 -24.53660 -22.60381 -21.59811 -20.47475 -20.36395 -19.11259 -18.65712 -18.55598 -18.25105 -17.32168 -17.04705 -16.82273 -16.66258 -16.04638 -15.93016 -15.68165 -15.19023 -15.11279 -14.93927 -14.87077 -14.53878 -14.17664 -14.05269 -13.72674 -13.57307 -13.35151 -13.29987 -13.05774 -13.01625 -12.91483 -12.82390 -12.59282 -12.47729 -12.39181 -12.12026 -12.00209 -11.69067 -11.56496 -11.44744 -11.41408 -11.24254 -11.11933 -10.88686 -10.58425 -9.89978 -9.01027 -8.97140 -7.94862 -5.22202 -0.14126 0.89968 1.35435 1.40675 1.45235 1.47871 1.53626 1.93899 2.55233 2.64442 3.24206 3.39062 3.47726 3.59935 3.69351 3.73354 3.76100 3.86819 4.03660 4.07528 4.12660 4.21659 4.32404 4.33721 4.37969 4.45198 4.50045 4.59084 4.65428 4.70005 4.76806 4.81148 4.82981 4.88929 4.92810 5.02480 5.07521 5.09699 5.13654 5.23889 5.28836 5.41987 5.47818 5.48076 5.53361 5.63980 5.64703 6.03168 6.27939 6.43119 6.88776 6.96591 7.33547 8.11655 8.32851 9.28484 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017865 B = 0.002177 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.934977 B =12857.249523 C =13604.026370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.033 3.967 3 C -0.230 4.230 4 C 0.138 3.862 5 N -0.485 5.485 6 C 0.081 3.919 7 C 0.514 3.486 8 O -0.587 6.587 9 N -0.617 5.617 10 C 0.101 3.899 11 C -0.089 4.089 12 H 0.110 0.890 13 C -0.103 4.103 14 C -0.138 4.138 15 C 0.173 3.827 16 H 0.046 0.954 17 N -0.735 5.735 18 C -0.236 4.236 19 H 0.074 0.926 20 C -0.078 4.078 21 N -0.970 5.970 22 Si 0.969 3.031 23 H -0.276 1.276 24 H -0.297 1.297 25 H -0.282 1.282 26 C -0.098 4.098 27 H 0.071 0.929 28 C 0.117 3.883 29 C 0.502 3.498 30 O -0.611 6.611 31 C -0.292 4.292 32 H 0.100 0.900 33 H 0.071 0.929 34 H 0.093 0.907 35 H 0.183 0.817 36 H 0.202 0.798 37 H 0.178 0.822 38 H 0.131 0.869 39 H 0.089 0.911 40 H 0.123 0.877 41 H 0.081 0.919 42 H 0.089 0.911 43 H 0.050 0.950 44 H 0.050 0.950 45 H 0.371 0.629 46 H 0.250 0.750 47 H 0.047 0.953 48 H 0.069 0.931 49 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.647 1.050 -25.586 30.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.029 3.971 3 C -0.252 4.252 4 C 0.013 3.987 5 N -0.194 5.194 6 C -0.043 4.043 7 C 0.303 3.697 8 O -0.467 6.467 9 N -0.350 5.350 10 C -0.020 4.020 11 C -0.108 4.108 12 H 0.129 0.871 13 C -0.141 4.141 14 C -0.178 4.178 15 C 0.064 3.936 16 H 0.064 0.936 17 N -0.374 5.374 18 C -0.368 4.368 19 H 0.092 0.908 20 C -0.270 4.270 21 N -0.621 5.621 22 Si 0.798 3.202 23 H -0.202 1.202 24 H -0.223 1.223 25 H -0.208 1.208 26 C -0.118 4.118 27 H 0.089 0.911 28 C -0.006 4.006 29 C 0.308 3.692 30 O -0.499 6.499 31 C -0.314 4.314 32 H 0.118 0.882 33 H 0.090 0.910 34 H 0.112 0.888 35 H 0.200 0.800 36 H 0.219 0.781 37 H 0.195 0.805 38 H 0.149 0.851 39 H 0.107 0.893 40 H 0.141 0.859 41 H 0.100 0.900 42 H 0.108 0.892 43 H 0.069 0.931 44 H 0.068 0.932 45 H 0.203 0.797 46 H 0.058 0.942 47 H 0.066 0.934 48 H 0.087 0.913 49 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -16.665 0.236 -25.044 30.083 hybrid contribution 0.658 -0.302 1.933 2.064 sum -16.007 -0.067 -23.112 28.114 Atomic orbital electron populations 1.21042 0.87945 1.04499 1.04439 1.20654 0.98564 0.92089 0.85796 1.21068 0.92430 0.99857 1.11836 1.22697 0.94479 0.89675 0.91896 1.45102 1.07900 1.07541 1.58840 1.21972 0.79039 1.09938 0.93368 1.21041 0.80725 0.75649 0.92325 1.90742 1.55634 1.52373 1.47998 1.49224 1.04615 1.71490 1.09703 1.23115 0.85347 1.00469 0.93043 1.22780 0.95328 1.00332 0.92382 0.87142 1.22369 0.93625 1.01731 0.96376 1.23036 0.98371 1.00499 0.95925 1.21347 0.92470 0.94665 0.85081 0.93649 1.42639 1.60311 1.19457 1.15027 1.19558 1.22105 0.99899 0.95251 0.90819 1.25520 1.03307 0.97605 1.00563 1.69795 1.51224 1.14906 1.26150 0.85279 0.79031 0.77181 0.78704 1.20207 1.22317 1.20829 1.22810 0.93847 0.97900 0.97274 0.91079 1.22415 0.93298 0.99284 0.85605 1.17522 0.90342 0.82652 0.78697 1.90895 1.70241 1.32217 1.56590 1.21904 0.91549 1.00833 1.17084 0.88170 0.90990 0.88833 0.79997 0.78135 0.80468 0.85087 0.89253 0.85866 0.90039 0.89235 0.93084 0.93153 0.79662 0.94152 0.93442 0.91259 0.84187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.00 10.03 71.24 0.71 -0.29 16 2 C 0.03 0.50 5.89 -19.82 -0.12 0.39 16 3 C -0.23 -2.64 9.71 22.08 0.21 -2.42 16 4 C 0.14 1.80 10.28 83.42 0.86 2.66 16 5 N -0.48 -10.09 2.07 -655.07 -1.36 -11.45 16 6 C 0.08 1.38 4.80 85.63 0.41 1.80 16 7 C 0.51 13.99 7.99 87.66 0.70 14.69 16 8 O -0.59 -22.54 16.71 -3.02 -0.05 -22.59 16 9 N -0.62 -15.25 3.31 -806.62 -2.67 -17.92 16 10 C 0.10 1.53 6.46 86.52 0.56 2.09 16 11 C -0.09 -1.68 3.96 -9.12 -0.04 -1.71 16 12 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 13 C -0.10 -1.97 6.36 31.61 0.20 -1.77 16 14 C -0.14 -4.26 6.57 31.85 0.21 -4.06 16 15 C 0.17 6.43 3.03 45.90 0.14 6.57 16 16 H 0.05 1.77 7.15 -2.39 -0.02 1.75 16 17 N -0.73 -36.57 5.22 -318.66 -1.66 -38.23 16 18 C -0.24 -13.10 9.97 84.04 0.84 -12.26 16 19 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16 20 C -0.08 -4.51 5.50 84.87 0.47 -4.04 16 21 N -0.97 -59.90 13.06 21.65 0.28 -59.62 16 22 Si 0.97 46.78 29.55 68.60 2.03 48.80 16 23 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 24 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 25 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 26 C -0.10 -2.95 3.62 -9.22 -0.03 -2.98 16 27 H 0.07 2.42 7.80 -2.39 -0.02 2.40 16 28 C 0.12 3.72 6.58 86.53 0.57 4.29 16 29 C 0.50 14.47 7.40 84.82 0.63 15.10 16 30 O -0.61 -22.88 16.63 -5.49 -0.09 -22.97 16 31 C -0.29 -6.81 9.65 22.40 0.22 -6.59 16 32 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.07 0.65 8.09 -2.39 -0.02 0.63 16 34 H 0.09 0.45 8.10 -2.39 -0.02 0.44 16 35 H 0.18 0.73 8.06 -2.91 -0.02 0.70 16 36 H 0.20 0.87 8.04 -2.91 -0.02 0.85 16 37 H 0.18 0.88 7.86 -2.39 -0.02 0.86 16 38 H 0.13 2.26 7.38 -2.39 -0.02 2.24 16 39 H 0.09 1.28 7.20 -2.39 -0.02 1.26 16 40 H 0.12 0.77 7.32 -2.39 -0.02 0.75 16 41 H 0.08 1.35 7.18 -2.39 -0.02 1.33 16 42 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 45 H 0.37 20.02 7.58 -92.70 -0.70 19.32 16 46 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 47 H 0.05 1.82 7.88 -2.39 -0.02 1.80 16 48 H 0.07 2.28 7.21 -2.39 -0.02 2.26 16 49 H 0.14 3.19 8.06 -2.91 -0.02 3.17 16 Total: -1.00 -89.47 397.45 3.27 -86.20 By element: Atomic # 1 Polarization: 26.06 SS G_CDS: 0.26 Total: 26.32 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: 6.54 Total: 11.45 kcal Atomic # 7 Polarization: -121.81 SS G_CDS: -5.41 Total: -127.22 kcal Atomic # 8 Polarization: -45.41 SS G_CDS: -0.14 Total: -45.55 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.80 kcal Total: -89.47 3.27 -86.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026368535.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.626 kcal (2) G-P(sol) polarization free energy of solvation -89.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds