Wall clock time and date at job start Wed Apr 1 2020 05:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.40199 * 120.36666 * 2 1 4 4 C 1.35349 * 119.94693 * 179.77101 * 3 2 1 5 5 N 1.35754 * 120.70224 * 0.52251 * 4 3 2 6 6 C 1.46510 * 119.62368 * 179.72100 * 5 4 3 7 7 C 1.50704 * 109.46906 * 269.73132 * 6 5 4 8 8 O 1.21283 * 119.99949 * 0.02562 * 7 6 5 9 9 N 1.34769 * 119.99631 * 180.02562 * 7 6 5 10 10 C 1.49622 * 126.07544 * 359.97296 * 9 7 6 11 11 C 1.51520 * 102.49679 * 154.35610 * 10 9 7 12 12 H 1.08999 * 111.12961 * 287.40654 * 11 10 9 13 13 C 1.51570 * 123.33632 * 151.62927 * 11 10 9 14 14 C 1.56335 * 101.81545 * 207.98547 * 13 11 10 15 15 C 1.56004 * 105.76836 * 25.43801 * 14 13 11 16 16 H 1.09001 * 110.52213 * 125.71832 * 15 14 13 17 17 N 1.46496 * 110.52874 * 248.33401 * 15 14 13 18 18 C 1.36945 * 119.99718 * 271.65847 * 17 15 14 19 19 H 1.07997 * 119.99756 * 359.97438 * 18 17 15 20 20 C 1.38805 * 119.99878 * 179.97438 * 18 17 15 21 21 N 1.31624 * 120.00257 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99929 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47174 * 270.00277 * 22 20 18 24 24 H 1.48501 * 109.47062 * 30.00228 * 22 20 18 25 25 H 1.48499 * 109.46981 * 150.00382 * 22 20 18 26 26 C 1.49709 * 104.10903 * 7.02907 * 15 14 13 27 27 H 1.09001 * 108.54262 * 77.89759 * 26 15 14 28 28 C 1.49290 * 126.07073 * 179.97438 * 9 7 6 29 29 C 1.34658 * 120.75316 * 359.44920 * 5 4 3 30 30 O 1.22066 * 119.99037 * 180.27070 * 29 5 4 31 31 C 1.36395 * 120.37058 * 180.02562 * 2 1 3 32 32 H 1.08998 * 109.47112 * 269.97918 * 1 2 3 33 33 H 1.08992 * 109.46992 * 29.98249 * 1 2 3 34 34 H 1.09004 * 109.46595 * 149.98260 * 1 2 3 35 35 H 1.08004 * 120.02473 * 0.02562 * 3 2 1 36 36 H 1.07998 * 119.64682 * 180.25122 * 4 3 2 37 37 H 1.08994 * 109.46641 * 149.73156 * 6 5 4 38 38 H 1.08994 * 109.46833 * 29.73282 * 6 5 4 39 39 H 1.09000 * 110.80555 * 36.10373 * 10 9 7 40 40 H 1.09007 * 110.97286 * 272.68624 * 10 9 7 41 41 H 1.09000 * 110.95689 * 89.85691 * 13 11 10 42 42 H 1.09000 * 110.99283 * 326.13320 * 13 11 10 43 43 H 1.08999 * 110.19127 * 266.36545 * 14 13 11 44 44 H 1.09001 * 110.25438 * 144.54728 * 14 13 11 45 45 H 0.96996 * 120.00499 * 91.65578 * 17 15 14 46 46 H 0.97001 * 119.99885 * 179.97438 * 21 20 18 47 47 H 1.09003 * 110.39412 * 292.40554 * 28 9 7 48 48 H 1.08994 * 110.39898 * 54.80934 * 28 9 7 49 49 H 1.08002 * 120.34643 * 0.02562 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2158 1.2096 0.0000 4 6 3.5692 1.1997 0.0047 5 7 4.2538 0.0275 -0.0012 6 6 5.7188 0.0444 -0.0022 7 6 6.2202 0.0501 -1.4233 8 8 5.4314 0.0414 -2.3447 9 7 7.5449 0.0648 -1.6704 10 6 8.6327 0.0774 -0.6431 11 6 9.7938 -0.5502 -1.3874 12 1 9.6416 -1.6211 -1.5218 13 6 11.2452 -0.2389 -1.0812 14 6 11.9253 -0.4883 -2.4666 15 6 10.8080 -0.2685 -3.5329 16 1 11.1256 0.4656 -4.2735 17 7 10.4616 -1.5350 -4.1826 18 6 11.1501 -1.9457 -5.2929 19 1 11.9480 -1.3357 -5.6897 20 6 10.8223 -3.1460 -5.9082 21 7 9.8494 -3.8892 -5.4248 22 14 11.7609 -3.7059 -7.4231 23 1 11.0908 -3.1845 -8.6414 24 1 13.1515 -3.1883 -7.3631 25 1 11.7866 -5.1899 -7.4690 26 6 9.6470 0.2511 -2.7433 27 1 9.8206 1.3047 -2.5242 28 6 8.1878 0.0716 -3.0178 29 6 3.6017 -1.1507 -0.0008 30 8 4.2313 -2.1965 -0.0011 31 6 2.1966 -1.1768 -0.0005 32 1 -0.3633 -0.0004 1.0276 33 1 -0.3633 0.8901 -0.5135 34 1 -0.3633 -0.8899 -0.5141 35 1 1.6821 2.1487 0.0004 36 1 4.1103 2.1344 0.0088 37 1 6.0926 -0.8413 0.5115 38 1 6.0721 0.9384 0.5114 39 1 8.3557 -0.5259 0.2214 40 1 8.8722 1.0969 -0.3409 41 1 11.6388 -0.9190 -0.3257 42 1 11.3647 0.7986 -0.7692 43 1 12.3026 -1.5093 -2.5222 44 1 12.7378 0.2216 -2.6213 45 1 9.7447 -2.0827 -3.8264 46 1 9.6201 -4.7278 -5.8551 47 1 8.0104 -0.8752 -3.5280 48 1 7.8107 0.9021 -3.6145 49 1 1.6684 -2.1188 -0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026368536.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:36 Heat of formation + Delta-G solvation = 0.722980 kcal Electronic energy + Delta-G solvation = -30478.483513 eV Core-core repulsion = 26406.979562 eV Total energy + Delta-G solvation = -4071.503951 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 3.30 seconds Orbital eigenvalues (eV) -41.62742 -40.43078 -38.56034 -37.12283 -35.46705 -35.20210 -33.32273 -31.06500 -30.82967 -29.94899 -29.16666 -28.49422 -26.93554 -25.42535 -23.88069 -23.43525 -22.98997 -21.73133 -20.09197 -19.53097 -18.85535 -17.74671 -17.70131 -17.33232 -17.13146 -16.17701 -16.02872 -15.52721 -15.25572 -14.64080 -14.47464 -14.39646 -14.38506 -14.12548 -13.92945 -13.60454 -13.58828 -12.98753 -12.86556 -12.65992 -12.59293 -12.51450 -12.29031 -11.93098 -11.86045 -11.81807 -11.44927 -11.26147 -10.98686 -10.83827 -10.70731 -10.49627 -10.29925 -10.27966 -10.08167 -10.04094 -9.75533 -9.59911 -9.55794 -8.90759 -8.59957 -8.10830 -6.96819 -5.75483 -3.05506 0.65625 1.74555 2.27399 2.56509 2.94383 3.44479 3.49279 3.51550 3.53976 4.10691 4.26477 4.36564 4.39709 4.51984 4.59614 4.76267 4.87325 4.92297 5.01314 5.06459 5.14719 5.24668 5.25770 5.31545 5.34007 5.43472 5.55060 5.55963 5.60173 5.74632 5.75827 5.81580 5.86551 5.90798 5.96172 6.13040 6.18417 6.20093 6.26175 6.33745 6.35204 6.41262 6.51824 6.64094 6.79157 6.91979 7.03303 7.48997 7.71218 7.95375 8.10872 8.42120 9.53394 10.09700 10.43878 11.46555 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014472 B = 0.002532 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.345919 B =11054.241693 C =12253.128202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.013 3.987 3 C -0.231 4.231 4 C 0.145 3.855 5 N -0.482 5.482 6 C 0.076 3.924 7 C 0.515 3.485 8 O -0.528 6.528 9 N -0.619 5.619 10 C 0.112 3.888 11 C -0.125 4.125 12 H 0.095 0.905 13 C -0.098 4.098 14 C -0.145 4.145 15 C 0.197 3.803 16 H 0.055 0.945 17 N -0.718 5.718 18 C -0.243 4.243 19 H 0.071 0.929 20 C -0.011 4.011 21 N -0.930 5.930 22 Si 0.906 3.094 23 H -0.290 1.290 24 H -0.282 1.282 25 H -0.292 1.292 26 C -0.119 4.119 27 H 0.068 0.932 28 C 0.133 3.867 29 C 0.521 3.479 30 O -0.546 6.546 31 C -0.245 4.245 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.144 0.856 36 H 0.160 0.840 37 H 0.129 0.871 38 H 0.119 0.881 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.076 0.924 44 H 0.053 0.947 45 H 0.385 0.615 46 H 0.256 0.744 47 H 0.085 0.915 48 H 0.069 0.931 49 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.633 15.765 17.925 26.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.009 3.991 3 C -0.254 4.254 4 C 0.018 3.982 5 N -0.193 5.193 6 C -0.050 4.050 7 C 0.301 3.699 8 O -0.405 6.405 9 N -0.354 5.354 10 C -0.009 4.009 11 C -0.144 4.144 12 H 0.113 0.887 13 C -0.136 4.136 14 C -0.186 4.186 15 C 0.085 3.915 16 H 0.073 0.927 17 N -0.359 5.359 18 C -0.374 4.374 19 H 0.089 0.911 20 C -0.208 4.208 21 N -0.577 5.577 22 Si 0.737 3.263 23 H -0.217 1.217 24 H -0.208 1.208 25 H -0.218 1.218 26 C -0.139 4.139 27 H 0.087 0.913 28 C 0.013 3.987 29 C 0.323 3.677 30 O -0.428 6.428 31 C -0.267 4.267 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.162 0.838 36 H 0.177 0.823 37 H 0.147 0.853 38 H 0.137 0.863 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.095 0.905 44 H 0.072 0.928 45 H 0.219 0.781 46 H 0.066 0.934 47 H 0.103 0.897 48 H 0.087 0.913 49 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -11.623 15.029 17.274 25.678 hybrid contribution 0.367 -0.482 -0.772 0.982 sum -11.256 14.547 16.501 24.711 Atomic orbital electron populations 1.20916 0.90401 1.03593 1.02944 1.20188 0.96733 0.92667 0.89503 1.20491 0.92308 0.98870 1.13740 1.21857 0.93613 0.89449 0.93283 1.45063 1.07193 1.07324 1.59696 1.21772 0.79595 1.07053 0.96541 1.20201 0.81394 0.77350 0.90937 1.90769 1.54229 1.49614 1.45839 1.49792 1.04240 1.72621 1.08783 1.21859 0.87458 1.00644 0.90976 1.22680 0.94093 1.01318 0.96346 0.88651 1.21817 0.93088 1.00403 0.98269 1.23867 0.98832 1.02342 0.93592 1.20020 0.89991 0.89548 0.91915 0.92654 1.42438 1.41541 1.20203 1.31762 1.19221 1.12518 1.02584 1.03071 0.91124 1.24759 0.98872 0.97614 0.99541 1.69662 1.31577 1.14467 1.42039 0.86218 0.79196 0.77723 0.83190 1.21741 1.20792 1.21834 1.22060 0.94226 0.99725 0.97862 0.91324 1.20936 0.91505 1.03469 0.82821 1.17114 0.89391 0.82464 0.78747 1.90991 1.69071 1.30196 1.52518 1.21928 0.92229 0.99601 1.12932 0.90198 0.90802 0.90804 0.83797 0.82303 0.85324 0.86324 0.90589 0.90806 0.92004 0.91992 0.90511 0.92829 0.78089 0.93424 0.89686 0.91262 0.83538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.73 10.03 36.01 0.36 -0.37 16 2 C 0.01 0.12 5.89 -104.55 -0.62 -0.50 16 3 C -0.23 -1.84 9.71 -39.88 -0.39 -2.23 16 4 C 0.14 1.26 10.28 -16.85 -0.17 1.09 16 5 N -0.48 -5.89 2.07 -121.06 -0.25 -6.14 16 6 C 0.08 0.84 4.87 -5.19 -0.03 0.81 16 7 C 0.52 7.97 7.94 -10.99 -0.09 7.89 16 8 O -0.53 -10.60 16.80 5.55 0.09 -10.50 16 9 N -0.62 -9.00 3.43 -171.65 -0.59 -9.59 16 10 C 0.11 1.23 6.49 -3.05 -0.02 1.21 16 11 C -0.13 -1.72 3.08 -89.24 -0.28 -1.99 16 12 H 0.10 1.62 7.96 -51.93 -0.41 1.20 16 13 C -0.10 -1.21 6.62 -25.66 -0.17 -1.38 16 14 C -0.15 -2.32 6.74 -23.33 -0.16 -2.48 16 15 C 0.20 3.64 3.45 -67.95 -0.23 3.40 16 16 H 0.06 1.04 8.10 -51.93 -0.42 0.62 16 17 N -0.72 -17.31 4.89 -53.45 -0.26 -17.57 16 18 C -0.24 -6.60 9.97 -15.06 -0.15 -6.75 16 19 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 20 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 21 N -0.93 -28.42 13.06 55.49 0.72 -27.69 16 22 Si 0.91 22.51 29.55 -169.99 -5.02 17.49 16 23 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 26 C -0.12 -1.83 2.27 -91.09 -0.21 -2.03 16 27 H 0.07 0.91 8.00 -51.93 -0.42 0.49 16 28 C 0.13 2.27 6.65 -4.19 -0.03 2.25 16 29 C 0.52 8.02 7.40 -15.45 -0.11 7.91 16 30 O -0.55 -10.68 16.64 4.86 0.08 -10.60 16 31 C -0.25 -3.05 9.65 -39.38 -0.38 -3.43 16 32 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.35 8.10 -51.93 -0.42 -0.07 16 34 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 35 H 0.14 0.71 8.06 -52.48 -0.42 0.29 16 36 H 0.16 0.80 8.03 -52.49 -0.42 0.37 16 37 H 0.13 1.47 7.15 -51.93 -0.37 1.10 16 38 H 0.12 0.72 8.01 -51.93 -0.42 0.31 16 39 H 0.08 0.70 7.58 -51.93 -0.39 0.30 16 40 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.08 1.44 7.98 -51.93 -0.41 1.02 16 44 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.38 10.07 6.73 -40.82 -0.27 9.80 16 46 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 47 H 0.08 1.80 7.17 -51.93 -0.37 1.43 16 48 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 49 H 0.15 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 398.31 15.07 6.00 6.00 Total: -1.00 -37.46 398.31 -9.66 -47.13 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -7.68 Total: 8.50 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: -2.76 Total: 2.97 kcal Atomic # 7 Polarization: -60.62 SS G_CDS: -0.38 Total: -60.99 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: 0.17 Total: -21.10 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -37.46 -9.66 -47.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026368536.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.848 kcal (2) G-P(sol) polarization free energy of solvation -37.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.30 seconds