Wall clock time and date at job start Wed Apr 1 2020 05:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.40193 * 120.37150 * 2 1 4 4 C 1.35349 * 119.95531 * 179.97438 * 3 2 1 5 5 N 1.35766 * 120.69658 * 359.97438 * 4 3 2 6 6 C 1.46503 * 119.62249 * 180.02562 * 5 4 3 7 7 C 1.50703 * 109.47138 * 89.99721 * 6 5 4 8 8 O 1.21286 * 119.99749 * 359.72691 * 7 6 5 9 9 N 1.34772 * 120.00144 * 180.02562 * 7 6 5 10 10 C 1.48352 * 128.18859 * 359.40158 * 9 7 6 11 11 C 1.54916 * 104.06630 * 138.26541 * 10 9 7 12 12 H 1.08993 * 112.55102 * 263.88868 * 11 10 9 13 13 C 1.53564 * 108.93998 * 139.48326 * 11 10 9 14 14 C 1.53953 * 106.03283 * 229.12225 * 13 11 10 15 15 C 1.53955 * 104.88610 * 29.56487 * 14 13 11 16 16 H 1.08998 * 110.19620 * 211.26426 * 15 14 13 17 17 N 1.46497 * 110.14084 * 89.58096 * 15 14 13 18 18 C 1.36943 * 120.00230 * 138.28368 * 17 15 14 19 19 H 1.07993 * 119.99587 * 359.97438 * 18 17 15 20 20 C 1.38810 * 120.00085 * 179.97438 * 18 17 15 21 21 N 1.31613 * 119.99935 * 180.02562 * 20 18 17 22 22 Si 1.86804 * 119.99956 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.47439 * 89.99919 * 22 20 18 24 24 H 1.48502 * 109.47073 * 210.00293 * 22 20 18 25 25 H 1.48502 * 109.46928 * 329.99890 * 22 20 18 26 26 C 1.53557 * 106.03218 * 330.43432 * 15 14 13 27 27 H 1.08993 * 111.66049 * 254.94078 * 26 15 14 28 28 C 1.48349 * 128.19463 * 179.72716 * 9 7 6 29 29 C 1.34658 * 120.75306 * 0.29626 * 5 4 3 30 30 O 1.22056 * 119.98415 * 179.70748 * 29 5 4 31 31 C 1.36402 * 120.36890 * 179.97438 * 2 1 3 32 32 H 1.09001 * 109.47096 * 90.00246 * 1 2 3 33 33 H 1.08996 * 109.47517 * 209.99881 * 1 2 3 34 34 H 1.08999 * 109.47527 * 330.00270 * 1 2 3 35 35 H 1.08005 * 120.02226 * 359.97438 * 3 2 1 36 36 H 1.07996 * 119.65144 * 179.97438 * 4 3 2 37 37 H 1.08997 * 109.46700 * 330.00163 * 6 5 4 38 38 H 1.08996 * 109.46993 * 209.99771 * 6 5 4 39 39 H 1.08996 * 110.47414 * 256.99629 * 10 9 7 40 40 H 1.08993 * 110.47317 * 19.60295 * 10 9 7 41 41 H 1.09004 * 110.13741 * 109.98256 * 13 11 10 42 42 H 1.08994 * 110.19647 * 348.29993 * 13 11 10 43 43 H 1.09001 * 110.35545 * 270.71132 * 14 13 11 44 44 H 1.09000 * 110.44750 * 148.46171 * 14 13 11 45 45 H 0.96999 * 119.99779 * 318.27938 * 17 15 14 46 46 H 0.97002 * 120.00068 * 180.02562 * 21 20 18 47 47 H 1.08999 * 110.47059 * 340.40104 * 28 9 7 48 48 H 1.09005 * 110.47095 * 102.99976 * 28 9 7 49 49 H 1.08000 * 120.34567 * 0.04806 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2158 1.2095 0.0000 4 6 3.5692 1.1997 0.0005 5 7 4.2538 0.0273 0.0016 6 6 5.7187 0.0441 0.0027 7 6 6.2199 0.0506 1.4239 8 8 5.4310 0.0470 2.3451 9 7 7.5447 0.0664 1.6712 10 6 8.6603 0.0672 0.6934 11 6 9.6725 1.0839 1.2778 12 1 9.5646 2.0778 0.8436 13 6 11.0945 0.5351 1.0910 14 6 11.7845 0.6666 2.4609 15 6 10.6465 0.5423 3.4904 16 1 10.8748 1.1340 4.3769 17 7 10.4505 -0.8620 3.8586 18 6 10.2272 -1.2023 5.1661 19 1 10.1959 -0.4355 5.9259 20 6 10.0410 -2.5329 5.5149 21 7 9.8258 -2.8599 6.7715 22 14 10.0957 -3.8594 4.2008 23 1 11.4889 -4.3516 4.0519 24 1 9.2125 -4.9856 4.5970 25 1 9.6293 -3.2956 2.9086 26 6 9.3884 1.0885 2.7999 27 1 9.1235 2.0785 3.1710 28 6 8.2323 0.0806 2.9856 29 6 3.6017 -1.1509 -0.0039 30 8 4.2312 -2.1965 -0.0082 31 6 2.1965 -1.1769 0.0005 32 1 -0.3633 0.0000 -1.0277 33 1 -0.3634 -0.8899 0.5138 34 1 -0.3634 0.8900 0.5138 35 1 1.6822 2.1486 -0.0004 36 1 4.1103 2.1343 0.0001 37 1 6.0721 0.9380 -0.5112 38 1 6.0926 -0.8419 -0.5104 39 1 9.1084 -0.9241 0.6254 40 1 8.3096 0.3959 -0.2848 41 1 11.6284 1.1226 0.3439 42 1 11.0573 -0.5113 0.7883 43 1 12.2709 1.6381 2.5488 44 1 12.5107 -0.1343 2.6000 45 1 10.4789 -1.5508 3.1762 46 1 9.6960 -3.7898 7.0153 47 1 7.5529 0.4196 3.7677 48 1 8.6236 -0.9090 3.2219 49 1 1.6682 -2.1188 0.0002 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026368537.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:42 Heat of formation + Delta-G solvation = -2.368228 kcal Electronic energy + Delta-G solvation = -31043.790739 eV Core-core repulsion = 26972.152744 eV Total energy + Delta-G solvation = -4071.637996 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.59828 -40.18194 -38.42853 -37.11529 -35.41570 -35.11501 -33.53644 -31.24048 -30.93149 -29.87544 -29.11481 -28.68385 -27.00704 -25.33205 -23.86859 -23.64697 -22.87467 -21.72895 -20.01940 -19.35739 -18.78530 -17.86102 -17.68025 -17.57845 -17.18419 -16.17063 -15.94518 -15.63259 -15.23314 -14.95384 -14.65938 -14.38468 -14.29407 -14.07920 -13.85742 -13.56255 -13.23403 -13.07249 -12.96865 -12.79553 -12.57741 -12.44658 -12.13596 -12.09590 -11.82746 -11.80091 -11.74415 -11.16297 -10.97265 -10.85620 -10.58534 -10.41181 -10.32483 -10.26229 -10.20865 -10.03387 -10.02020 -9.61137 -9.54009 -9.06562 -8.45756 -8.09499 -7.28634 -5.82080 -3.19469 0.67209 1.75687 2.32232 2.64430 3.11342 3.34722 3.36072 3.45929 3.57763 4.28909 4.35078 4.39402 4.52356 4.54108 4.56737 4.76787 4.82022 4.87195 4.89516 5.02700 5.16133 5.23933 5.25498 5.31657 5.34489 5.43207 5.50816 5.56042 5.59242 5.70730 5.76646 5.82118 5.88155 5.90894 5.93101 5.99540 6.14250 6.19503 6.20908 6.34122 6.37087 6.40019 6.52095 6.69222 6.74484 6.93498 6.96818 7.71545 7.93670 7.96536 8.21756 8.37091 9.13497 9.85408 10.02954 11.35832 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013058 B = 0.003129 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.825195 B = 8947.808481 C =10087.841893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.014 3.986 3 C -0.231 4.231 4 C 0.146 3.854 5 N -0.481 5.481 6 C 0.075 3.925 7 C 0.517 3.483 8 O -0.531 6.531 9 N -0.620 5.620 10 C 0.103 3.897 11 C -0.099 4.099 12 H 0.082 0.918 13 C -0.115 4.115 14 C -0.136 4.136 15 C 0.183 3.817 16 H 0.072 0.928 17 N -0.735 5.735 18 C -0.253 4.253 19 H 0.093 0.907 20 C 0.012 3.988 21 N -0.927 5.927 22 Si 0.878 3.122 23 H -0.283 1.283 24 H -0.290 1.290 25 H -0.277 1.277 26 C -0.123 4.123 27 H 0.077 0.923 28 C 0.106 3.894 29 C 0.521 3.479 30 O -0.549 6.549 31 C -0.246 4.246 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.145 0.855 36 H 0.160 0.840 37 H 0.118 0.882 38 H 0.127 0.873 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.060 0.940 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.072 0.928 45 H 0.362 0.638 46 H 0.261 0.739 47 H 0.072 0.928 48 H 0.120 0.880 49 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.900 13.582 -20.420 26.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.010 3.990 3 C -0.255 4.255 4 C 0.019 3.981 5 N -0.192 5.192 6 C -0.051 4.051 7 C 0.303 3.697 8 O -0.407 6.407 9 N -0.354 5.354 10 C -0.020 4.020 11 C -0.118 4.118 12 H 0.100 0.900 13 C -0.153 4.153 14 C -0.175 4.175 15 C 0.072 3.928 16 H 0.091 0.909 17 N -0.377 5.377 18 C -0.383 4.383 19 H 0.111 0.889 20 C -0.185 4.185 21 N -0.574 5.574 22 Si 0.708 3.292 23 H -0.210 1.210 24 H -0.216 1.216 25 H -0.204 1.204 26 C -0.145 4.145 27 H 0.095 0.905 28 C -0.015 4.015 29 C 0.323 3.677 30 O -0.431 6.431 31 C -0.268 4.268 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.162 0.838 36 H 0.177 0.823 37 H 0.136 0.864 38 H 0.145 0.855 39 H 0.096 0.904 40 H 0.089 0.911 41 H 0.079 0.921 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.090 0.910 45 H 0.195 0.805 46 H 0.071 0.929 47 H 0.091 0.909 48 H 0.137 0.863 49 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -10.042 12.842 -19.644 25.527 hybrid contribution 0.039 -0.944 -0.826 1.255 sum -10.003 11.897 -20.469 25.702 Atomic orbital electron populations 1.20915 0.90386 1.03609 1.02933 1.20186 0.96734 0.92660 0.89426 1.20491 0.92295 0.98881 1.13803 1.21867 0.93616 0.89461 0.93133 1.45063 1.07234 1.07326 1.59564 1.21771 0.79561 1.06878 0.96857 1.20097 0.81322 0.77531 0.90748 1.90764 1.54073 1.50036 1.45836 1.49251 1.03696 1.71728 1.10748 1.22841 0.87286 0.99960 0.91915 1.22627 0.94630 0.97944 0.96645 0.90009 1.22138 0.94430 1.00734 0.98023 1.22633 0.98791 1.01557 0.94502 1.20683 0.90286 0.86501 0.95378 0.90931 1.42899 1.86068 1.02052 1.06671 1.19084 1.42231 0.93416 0.83538 0.88949 1.24666 1.01378 0.96798 0.95665 1.69677 1.54827 1.17486 1.15407 0.86680 0.77653 0.83021 0.81824 1.20970 1.21590 1.20367 1.23223 0.98384 0.98820 0.94086 0.90489 1.23154 0.91944 1.03512 0.82912 1.17108 0.89389 0.82452 0.78724 1.90974 1.69115 1.30254 1.52726 1.21918 0.92212 0.99593 1.13092 0.90202 0.90810 0.90773 0.83765 0.82282 0.86413 0.85526 0.90450 0.91124 0.92095 0.91709 0.91830 0.90975 0.80470 0.92897 0.90906 0.86281 0.83568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.78 10.03 36.00 0.36 -0.42 16 2 C 0.01 0.13 5.89 -104.55 -0.62 -0.48 16 3 C -0.23 -1.98 9.71 -39.88 -0.39 -2.36 16 4 C 0.15 1.38 10.28 -16.84 -0.17 1.20 16 5 N -0.48 -6.24 2.07 -121.06 -0.25 -6.49 16 6 C 0.07 0.90 4.80 -5.19 -0.02 0.87 16 7 C 0.52 8.65 7.99 -10.99 -0.09 8.56 16 8 O -0.53 -11.34 16.71 5.55 0.09 -11.25 16 9 N -0.62 -9.92 3.31 -168.58 -0.56 -10.48 16 10 C 0.10 1.24 6.47 -2.01 -0.01 1.23 16 11 C -0.10 -1.16 3.95 -88.35 -0.35 -1.51 16 12 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 13 C -0.12 -1.31 6.37 -25.94 -0.17 -1.48 16 14 C -0.14 -1.84 6.50 -25.74 -0.17 -2.01 16 15 C 0.18 3.12 3.54 -67.15 -0.24 2.88 16 16 H 0.07 1.30 7.91 -51.93 -0.41 0.89 16 17 N -0.74 -15.88 2.69 -52.67 -0.14 -16.02 16 18 C -0.25 -6.77 9.92 -15.06 -0.15 -6.92 16 19 H 0.09 2.67 7.97 -52.49 -0.42 2.25 16 20 C 0.01 0.34 5.50 -17.43 -0.10 0.24 16 21 N -0.93 -28.97 13.97 55.49 0.78 -28.20 16 22 Si 0.88 22.12 27.74 -169.99 -4.71 17.41 16 23 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 25 H -0.28 -6.58 6.52 56.52 0.37 -6.21 16 26 C -0.12 -1.87 3.93 -88.58 -0.35 -2.22 16 27 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 28 C 0.11 1.99 6.27 -2.24 -0.01 1.97 16 29 C 0.52 8.33 7.40 -15.45 -0.11 8.22 16 30 O -0.55 -11.01 16.63 4.87 0.08 -10.92 16 31 C -0.25 -3.19 9.65 -39.38 -0.38 -3.57 16 32 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 34 H 0.07 0.38 8.10 -51.93 -0.42 -0.04 16 35 H 0.14 0.78 8.06 -52.48 -0.42 0.36 16 36 H 0.16 0.92 8.04 -52.49 -0.42 0.50 16 37 H 0.12 0.83 7.87 -51.93 -0.41 0.42 16 38 H 0.13 1.55 7.38 -51.93 -0.38 1.17 16 39 H 0.08 1.00 7.22 -51.93 -0.37 0.63 16 40 H 0.07 0.59 7.32 -51.93 -0.38 0.21 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.77 7.13 -51.93 -0.37 0.40 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.07 1.06 8.09 -51.93 -0.42 0.64 16 45 H 0.36 7.82 5.49 -40.82 -0.22 7.60 16 46 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 47 H 0.07 1.54 7.88 -51.93 -0.41 1.13 16 48 H 0.12 2.65 5.19 -51.93 -0.27 2.38 16 49 H 0.15 1.75 8.06 -52.49 -0.42 1.32 16 LS Contribution 390.84 15.07 5.89 5.89 Total: -1.00 -37.70 390.84 -9.25 -46.95 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -7.46 Total: 8.89 kcal Atomic # 6 Polarization: 7.18 SS G_CDS: -2.96 Total: 4.22 kcal Atomic # 7 Polarization: -61.01 SS G_CDS: -0.17 Total: -61.19 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: 0.17 Total: -22.17 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.71 Total: 17.41 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -37.70 -9.25 -46.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026368537.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.580 kcal (2) G-P(sol) polarization free energy of solvation -37.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds