Wall clock time and date at job start Wed Apr 1 2020 05:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.40193 * 120.37150 * 2 1 4 4 C 1.35349 * 119.95531 * 179.97438 * 3 2 1 5 5 N 1.35766 * 120.69658 * 359.97438 * 4 3 2 6 6 C 1.46503 * 119.62249 * 180.02562 * 5 4 3 7 7 C 1.50703 * 109.47138 * 89.99721 * 6 5 4 8 8 O 1.21286 * 119.99749 * 359.72691 * 7 6 5 9 9 N 1.34772 * 120.00144 * 180.02562 * 7 6 5 10 10 C 1.48352 * 128.18859 * 359.40158 * 9 7 6 11 11 C 1.54916 * 104.06630 * 138.26541 * 10 9 7 12 12 H 1.08993 * 112.55102 * 263.88868 * 11 10 9 13 13 C 1.53564 * 108.93998 * 139.48326 * 11 10 9 14 14 C 1.53953 * 106.03283 * 229.12225 * 13 11 10 15 15 C 1.53955 * 104.88610 * 29.56487 * 14 13 11 16 16 H 1.08998 * 110.19620 * 211.26426 * 15 14 13 17 17 N 1.46497 * 110.14084 * 89.58096 * 15 14 13 18 18 C 1.36943 * 120.00230 * 138.28368 * 17 15 14 19 19 H 1.07993 * 119.99587 * 359.97438 * 18 17 15 20 20 C 1.38810 * 120.00085 * 179.97438 * 18 17 15 21 21 N 1.31613 * 119.99935 * 180.02562 * 20 18 17 22 22 Si 1.86804 * 119.99956 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.47439 * 89.99919 * 22 20 18 24 24 H 1.48502 * 109.47073 * 210.00293 * 22 20 18 25 25 H 1.48502 * 109.46928 * 329.99890 * 22 20 18 26 26 C 1.53557 * 106.03218 * 330.43432 * 15 14 13 27 27 H 1.08993 * 111.66049 * 254.94078 * 26 15 14 28 28 C 1.48349 * 128.19463 * 179.72716 * 9 7 6 29 29 C 1.34658 * 120.75306 * 0.29626 * 5 4 3 30 30 O 1.22056 * 119.98415 * 179.70748 * 29 5 4 31 31 C 1.36402 * 120.36890 * 179.97438 * 2 1 3 32 32 H 1.09001 * 109.47096 * 90.00246 * 1 2 3 33 33 H 1.08996 * 109.47517 * 209.99881 * 1 2 3 34 34 H 1.08999 * 109.47527 * 330.00270 * 1 2 3 35 35 H 1.08005 * 120.02226 * 359.97438 * 3 2 1 36 36 H 1.07996 * 119.65144 * 179.97438 * 4 3 2 37 37 H 1.08997 * 109.46700 * 330.00163 * 6 5 4 38 38 H 1.08996 * 109.46993 * 209.99771 * 6 5 4 39 39 H 1.08996 * 110.47414 * 256.99629 * 10 9 7 40 40 H 1.08993 * 110.47317 * 19.60295 * 10 9 7 41 41 H 1.09004 * 110.13741 * 109.98256 * 13 11 10 42 42 H 1.08994 * 110.19647 * 348.29993 * 13 11 10 43 43 H 1.09001 * 110.35545 * 270.71132 * 14 13 11 44 44 H 1.09000 * 110.44750 * 148.46171 * 14 13 11 45 45 H 0.96999 * 119.99779 * 318.27938 * 17 15 14 46 46 H 0.97002 * 120.00068 * 180.02562 * 21 20 18 47 47 H 1.08999 * 110.47059 * 340.40104 * 28 9 7 48 48 H 1.09005 * 110.47095 * 102.99976 * 28 9 7 49 49 H 1.08000 * 120.34567 * 0.04806 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2158 1.2095 0.0000 4 6 3.5692 1.1997 0.0005 5 7 4.2538 0.0273 0.0016 6 6 5.7187 0.0441 0.0027 7 6 6.2199 0.0506 1.4239 8 8 5.4310 0.0470 2.3451 9 7 7.5447 0.0664 1.6712 10 6 8.6603 0.0672 0.6934 11 6 9.6725 1.0839 1.2778 12 1 9.5646 2.0778 0.8436 13 6 11.0945 0.5351 1.0910 14 6 11.7845 0.6666 2.4609 15 6 10.6465 0.5423 3.4904 16 1 10.8748 1.1340 4.3769 17 7 10.4505 -0.8620 3.8586 18 6 10.2272 -1.2023 5.1661 19 1 10.1959 -0.4355 5.9259 20 6 10.0410 -2.5329 5.5149 21 7 9.8258 -2.8599 6.7715 22 14 10.0957 -3.8594 4.2008 23 1 11.4889 -4.3516 4.0519 24 1 9.2125 -4.9856 4.5970 25 1 9.6293 -3.2956 2.9086 26 6 9.3884 1.0885 2.7999 27 1 9.1235 2.0785 3.1710 28 6 8.2323 0.0806 2.9856 29 6 3.6017 -1.1509 -0.0039 30 8 4.2312 -2.1965 -0.0082 31 6 2.1965 -1.1769 0.0005 32 1 -0.3633 0.0000 -1.0277 33 1 -0.3634 -0.8899 0.5138 34 1 -0.3634 0.8900 0.5138 35 1 1.6822 2.1486 -0.0004 36 1 4.1103 2.1343 0.0001 37 1 6.0721 0.9380 -0.5112 38 1 6.0926 -0.8419 -0.5104 39 1 9.1084 -0.9241 0.6254 40 1 8.3096 0.3959 -0.2848 41 1 11.6284 1.1226 0.3439 42 1 11.0573 -0.5113 0.7883 43 1 12.2709 1.6381 2.5488 44 1 12.5107 -0.1343 2.6000 45 1 10.4789 -1.5508 3.1762 46 1 9.6960 -3.7898 7.0153 47 1 7.5529 0.4196 3.7677 48 1 8.6236 -0.9090 3.2219 49 1 1.6682 -2.1188 0.0002 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026368537.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:41 Heat of formation + Delta-G solvation = -28.559246 kcal Electronic energy + Delta-G solvation = -31044.926467 eV Core-core repulsion = 26972.152744 eV Total energy + Delta-G solvation = -4072.773723 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.58006 -41.39826 -39.72880 -38.16214 -36.67334 -36.26475 -35.15852 -33.10979 -31.87348 -30.87501 -30.22913 -29.94483 -27.90939 -26.68254 -25.00965 -24.69939 -24.54770 -22.61924 -21.21874 -20.58585 -20.14112 -19.67832 -18.64488 -18.58976 -18.28619 -17.19826 -17.06029 -16.96941 -16.70336 -16.11411 -16.02368 -15.84198 -15.24010 -15.18228 -15.00615 -14.78509 -14.49683 -14.24692 -14.19238 -13.93152 -13.57709 -13.45228 -13.37638 -13.27628 -13.06208 -12.94870 -12.86204 -12.49840 -12.37051 -12.35391 -12.10801 -11.92270 -11.62141 -11.52040 -11.39730 -11.38710 -11.21647 -11.15213 -11.01973 -10.59695 -9.90907 -9.20151 -9.03291 -8.07403 -5.38105 -0.16123 0.87568 1.26966 1.31856 1.34984 1.37836 1.42935 1.98595 2.40770 2.62642 3.23020 3.29344 3.49775 3.52141 3.60559 3.68873 3.80523 3.83007 3.98846 4.04165 4.09265 4.29860 4.31498 4.35464 4.37650 4.48104 4.52014 4.60743 4.72185 4.74884 4.79944 4.81455 4.86506 4.86634 5.00702 5.05839 5.07660 5.17214 5.19940 5.22804 5.38347 5.45274 5.46348 5.47051 5.62436 5.63843 5.77049 6.01147 6.18527 6.49340 6.89635 6.96832 7.04798 7.82292 7.97870 9.14585 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013058 B = 0.003129 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.825195 B = 8947.808481 C =10087.841893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.035 3.965 3 C -0.229 4.229 4 C 0.139 3.861 5 N -0.485 5.485 6 C 0.083 3.917 7 C 0.507 3.493 8 O -0.592 6.592 9 N -0.619 5.619 10 C 0.096 3.904 11 C -0.083 4.083 12 H 0.123 0.877 13 C -0.109 4.109 14 C -0.128 4.128 15 C 0.168 3.832 16 H 0.054 0.946 17 N -0.736 5.736 18 C -0.218 4.218 19 H 0.060 0.940 20 C -0.062 4.062 21 N -0.983 5.983 22 Si 0.940 3.060 23 H -0.269 1.269 24 H -0.309 1.309 25 H -0.257 1.257 26 C -0.114 4.114 27 H 0.087 0.913 28 C 0.105 3.895 29 C 0.499 3.501 30 O -0.616 6.616 31 C -0.295 4.295 32 H 0.101 0.899 33 H 0.069 0.931 34 H 0.095 0.905 35 H 0.187 0.813 36 H 0.206 0.794 37 H 0.183 0.817 38 H 0.123 0.877 39 H 0.067 0.933 40 H 0.123 0.877 41 H 0.100 0.900 42 H 0.059 0.941 43 H 0.090 0.910 44 H 0.059 0.941 45 H 0.364 0.636 46 H 0.255 0.745 47 H 0.030 0.970 48 H 0.081 0.919 49 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.775 17.601 -25.231 32.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.031 3.969 3 C -0.251 4.251 4 C 0.014 3.986 5 N -0.194 5.194 6 C -0.042 4.042 7 C 0.296 3.704 8 O -0.472 6.472 9 N -0.352 5.352 10 C -0.025 4.025 11 C -0.102 4.102 12 H 0.141 0.859 13 C -0.147 4.147 14 C -0.166 4.166 15 C 0.060 3.940 16 H 0.073 0.927 17 N -0.378 5.378 18 C -0.349 4.349 19 H 0.078 0.922 20 C -0.253 4.253 21 N -0.634 5.634 22 Si 0.769 3.231 23 H -0.195 1.195 24 H -0.237 1.237 25 H -0.182 1.182 26 C -0.135 4.135 27 H 0.105 0.895 28 C -0.018 4.018 29 C 0.305 3.695 30 O -0.504 6.504 31 C -0.317 4.317 32 H 0.120 0.880 33 H 0.088 0.912 34 H 0.114 0.886 35 H 0.204 0.796 36 H 0.222 0.778 37 H 0.200 0.800 38 H 0.141 0.859 39 H 0.085 0.915 40 H 0.141 0.859 41 H 0.118 0.882 42 H 0.078 0.922 43 H 0.108 0.892 44 H 0.077 0.923 45 H 0.198 0.802 46 H 0.064 0.936 47 H 0.049 0.951 48 H 0.099 0.901 49 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -9.882 16.963 -24.552 31.436 hybrid contribution -0.095 -1.963 0.749 2.103 sum -9.977 15.000 -23.803 29.852 Atomic orbital electron populations 1.21042 0.87775 1.04531 1.04507 1.20673 0.98650 0.92017 0.85587 1.21096 0.92354 0.99848 1.11828 1.22754 0.94523 0.89592 0.91766 1.45112 1.07864 1.07643 1.58731 1.21951 0.79140 1.09689 0.93389 1.21070 0.80964 0.76042 0.92321 1.90731 1.55646 1.52707 1.48155 1.49342 1.04535 1.70933 1.10396 1.23183 0.86028 1.00024 0.93294 1.22673 0.94594 0.99904 0.93022 0.85933 1.22151 0.94031 1.01335 0.97200 1.22533 0.97035 1.02589 0.94487 1.21041 0.93042 0.83561 0.96393 0.92731 1.42841 1.86124 1.04370 1.04487 1.19037 1.38438 0.92265 0.85202 0.92193 1.25374 1.03080 0.99318 0.97529 1.69854 1.58342 1.17431 1.17802 0.85646 0.77811 0.79611 0.80060 1.19482 1.23684 1.18233 1.23091 0.95296 0.97745 0.97416 0.89458 1.22804 0.92686 1.02348 0.83988 1.17592 0.90466 0.82697 0.78740 1.90909 1.70346 1.32476 1.56696 1.21887 0.91406 1.00967 1.17431 0.88036 0.91173 0.88578 0.79572 0.77766 0.80017 0.85890 0.91484 0.85886 0.88195 0.92207 0.89167 0.92252 0.80182 0.93617 0.95119 0.90113 0.84406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.23 10.03 71.23 0.71 -0.51 16 2 C 0.03 0.62 5.89 -19.82 -0.12 0.50 16 3 C -0.23 -3.03 9.71 22.08 0.21 -2.81 16 4 C 0.14 2.11 10.28 83.42 0.86 2.96 16 5 N -0.48 -11.86 2.07 -655.07 -1.36 -13.22 16 6 C 0.08 1.77 4.80 85.63 0.41 2.18 16 7 C 0.51 16.64 7.99 87.66 0.70 17.34 16 8 O -0.59 -26.19 16.71 -3.05 -0.05 -26.24 16 9 N -0.62 -19.02 3.31 -805.65 -2.66 -21.68 16 10 C 0.10 1.91 6.47 86.68 0.56 2.48 16 11 C -0.08 -1.51 3.95 -9.32 -0.04 -1.55 16 12 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 13 C -0.11 -1.91 6.37 31.11 0.20 -1.72 16 14 C -0.13 -3.05 6.50 31.24 0.20 -2.84 16 15 C 0.17 5.63 3.54 45.50 0.16 5.79 16 16 H 0.05 1.99 7.91 -2.39 -0.02 1.97 16 17 N -0.74 -32.33 2.69 -320.53 -0.86 -33.19 16 18 C -0.22 -12.26 9.92 84.03 0.83 -11.43 16 19 H 0.06 3.70 7.97 -2.91 -0.02 3.68 16 20 C -0.06 -3.71 5.50 84.86 0.47 -3.25 16 21 N -0.98 -65.18 13.97 21.65 0.30 -64.87 16 22 Si 0.94 47.68 27.74 68.60 1.90 49.58 16 23 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 24 H -0.31 -16.60 7.11 99.48 0.71 -15.89 16 25 H -0.26 -11.96 6.52 99.48 0.65 -11.31 16 26 C -0.11 -3.26 3.93 -9.47 -0.04 -3.30 16 27 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 28 C 0.10 4.03 6.27 86.53 0.54 4.58 16 29 C 0.50 16.60 7.40 84.82 0.63 17.22 16 30 O -0.62 -26.55 16.63 -5.50 -0.09 -26.64 16 31 C -0.30 -7.95 9.65 22.40 0.22 -7.73 16 32 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.07 0.79 8.09 -2.39 -0.02 0.77 16 34 H 0.10 0.60 8.10 -2.39 -0.02 0.58 16 35 H 0.19 0.90 8.06 -2.91 -0.02 0.87 16 36 H 0.21 1.12 8.04 -2.91 -0.02 1.10 16 37 H 0.18 1.41 7.87 -2.39 -0.02 1.39 16 38 H 0.12 2.81 7.38 -2.39 -0.02 2.79 16 39 H 0.07 1.52 7.22 -2.39 -0.02 1.51 16 40 H 0.12 1.23 7.32 -2.39 -0.02 1.21 16 41 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.06 1.15 7.13 -2.39 -0.02 1.13 16 43 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 44 H 0.06 1.60 8.09 -2.39 -0.02 1.58 16 45 H 0.36 15.71 5.49 -92.71 -0.51 15.20 16 46 H 0.25 16.32 8.31 -92.71 -0.77 15.55 16 47 H 0.03 1.39 7.88 -2.39 -0.02 1.37 16 48 H 0.08 3.76 5.19 -2.38 -0.01 3.74 16 49 H 0.14 3.68 8.06 -2.91 -0.02 3.65 16 Total: -1.00 -96.62 390.84 4.09 -92.53 By element: Atomic # 1 Polarization: 25.43 SS G_CDS: 0.40 Total: 25.82 kcal Atomic # 6 Polarization: 11.39 SS G_CDS: 6.52 Total: 17.91 kcal Atomic # 7 Polarization: -128.38 SS G_CDS: -4.58 Total: -132.96 kcal Atomic # 8 Polarization: -52.74 SS G_CDS: -0.14 Total: -52.88 kcal Atomic # 14 Polarization: 47.68 SS G_CDS: 1.90 Total: 49.58 kcal Total: -96.62 4.09 -92.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026368537.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.970 kcal (2) G-P(sol) polarization free energy of solvation -96.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds