Wall clock time and date at job start Wed Apr 1 2020 04:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37993 * 120.82406 * 2 1 4 4 C 1.39125 * 119.26737 * 180.23872 * 3 2 1 5 5 O 1.35498 * 119.52860 * 179.74361 * 4 3 2 6 6 N 1.32435 * 120.94698 * 359.76171 * 4 3 2 7 7 C 1.31641 * 121.80065 * 0.02562 * 6 4 3 8 8 C 1.50694 * 119.68551 * 179.97438 * 7 6 4 9 9 C 1.39562 * 120.62382 * 359.97438 * 7 6 4 10 10 C 1.47613 * 120.49702 * 179.97438 * 9 7 6 11 11 O 1.21579 * 120.00180 * 89.99597 * 10 9 7 12 12 N 1.34774 * 120.00094 * 269.99508 * 10 9 7 13 13 C 1.47222 * 126.69928 * 359.97438 * 12 10 9 14 14 C 1.55733 * 106.44820 * 148.32318 * 13 12 10 15 15 H 1.09000 * 112.38330 * 258.03955 * 14 13 12 16 16 C 1.54409 * 109.24166 * 132.63043 * 14 13 12 17 17 C 1.55059 * 103.89461 * 223.04615 * 16 14 13 18 18 C 1.55057 * 102.14033 * 40.05158 * 17 16 14 19 19 H 1.08995 * 110.53815 * 78.53911 * 18 17 16 20 20 N 1.46503 * 110.53350 * 201.17379 * 18 17 16 21 21 C 1.36939 * 119.99915 * 273.54743 * 20 18 17 22 22 H 1.08004 * 119.99654 * 359.97438 * 21 20 18 23 23 C 1.38804 * 120.00195 * 180.02562 * 21 20 18 24 24 N 1.31615 * 120.00357 * 179.97438 * 23 21 20 25 25 Si 1.86802 * 119.99853 * 359.97438 * 23 21 20 26 26 H 1.48505 * 109.47012 * 89.99964 * 25 23 21 27 27 H 1.48498 * 109.47180 * 209.99874 * 25 23 21 28 28 H 1.48498 * 109.47239 * 329.99921 * 25 23 21 29 29 C 1.54324 * 103.93685 * 319.92403 * 18 17 16 30 30 H 1.09000 * 111.69490 * 262.79818 * 29 18 17 31 31 C 1.47211 * 126.70887 * 179.97438 * 12 10 9 32 32 H 1.09004 * 109.46769 * 270.25313 * 1 2 3 33 33 H 1.09000 * 109.47346 * 30.24556 * 1 2 3 34 34 H 1.08993 * 109.47139 * 150.24937 * 1 2 3 35 35 H 1.08005 * 120.36679 * 359.97438 * 3 2 1 36 36 H 0.96698 * 113.99778 * 270.01928 * 5 4 3 37 37 H 1.08993 * 109.47719 * 269.97947 * 8 7 6 38 38 H 1.09003 * 109.47319 * 29.98174 * 8 7 6 39 39 H 1.09007 * 109.47184 * 149.98267 * 8 7 6 40 40 H 1.08997 * 110.07019 * 267.97050 * 13 12 10 41 41 H 1.08999 * 110.07182 * 29.45263 * 13 12 10 42 42 H 1.09001 * 110.57641 * 104.43479 * 16 14 13 43 43 H 1.08998 * 110.53648 * 341.63634 * 16 14 13 44 44 H 1.09002 * 110.90474 * 281.82964 * 17 16 14 45 45 H 1.09003 * 110.90440 * 158.27187 * 17 16 14 46 46 H 0.96999 * 120.00110 * 93.54094 * 20 18 17 47 47 H 0.97001 * 120.00429 * 180.02562 * 24 23 21 48 48 H 1.09002 * 110.07176 * 92.02881 * 31 12 10 49 49 H 1.08997 * 110.07156 * 330.49128 * 31 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.1850 0.0000 4 6 3.6048 1.1472 -0.0051 5 8 4.3044 2.3076 -0.0104 6 7 4.2548 -0.0067 -0.0051 7 6 3.6204 -1.1602 -0.0009 8 6 4.4079 -2.4450 -0.0018 9 6 2.2255 -1.2044 0.0043 10 6 1.5171 -2.4994 0.0084 11 8 1.2293 -3.0315 1.0629 12 7 1.1892 -3.0919 -1.1569 13 6 1.4631 -2.5822 -2.5107 14 6 1.6715 -3.8306 -3.4180 15 1 2.7245 -4.0235 -3.6233 16 6 0.8422 -3.6649 -4.7099 17 6 0.2063 -5.0625 -4.9261 18 6 -0.1759 -5.4740 -3.4808 19 1 -1.0933 -4.9738 -3.1708 20 7 -0.3267 -6.9280 -3.3834 21 6 -1.5276 -7.5134 -3.6837 22 1 -2.3637 -6.9032 -3.9920 23 6 -1.6707 -8.8909 -3.5909 24 7 -2.8251 -9.4536 -3.8791 25 14 -0.2248 -9.9463 -3.0569 26 1 -0.2392 -10.0946 -1.5794 27 1 -0.3291 -11.2856 -3.6898 28 1 1.0432 -9.2976 -3.4770 29 6 1.0176 -4.9923 -2.6293 30 1 1.7254 -5.7982 -2.4352 31 6 0.4873 -4.3749 -1.3248 32 1 -0.3633 0.0045 1.0277 33 1 -0.3634 0.8878 -0.5176 34 1 -0.3633 -0.8921 -0.5099 35 1 1.6936 2.1314 -0.0004 36 1 4.5039 2.6425 -0.8953 37 1 4.5937 -2.7566 -1.0296 38 1 5.3586 -2.2888 0.5080 39 1 3.8410 -3.2190 0.5156 40 1 0.6189 -1.9913 -2.8658 41 1 2.3685 -1.9753 -2.5058 42 1 1.4876 -3.4045 -5.5488 43 1 0.0681 -2.9097 -4.5732 44 1 0.9308 -5.7580 -5.3499 45 1 -0.6792 -4.9934 -5.5579 46 1 0.4241 -7.4760 -3.1062 47 1 -2.9252 -10.4162 -3.8138 48 1 -0.5870 -4.2066 -1.4004 49 1 0.7051 -5.0333 -0.4838 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026426230.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:42 Heat of formation + Delta-G solvation = -52.924367 kcal Electronic energy + Delta-G solvation = -30971.979236 eV Core-core repulsion = 26898.148962 eV Total energy + Delta-G solvation = -4073.830274 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.21063 -41.12378 -39.71017 -38.14706 -36.80006 -35.41986 -35.05965 -33.09607 -33.02857 -31.00028 -29.98264 -29.11761 -28.76185 -26.81221 -25.45872 -24.40717 -23.83653 -22.42298 -21.69509 -20.77041 -20.63415 -19.47905 -19.37761 -18.59816 -18.32175 -17.36999 -17.11348 -16.66968 -16.53456 -15.89590 -15.47393 -15.36825 -15.22310 -14.90886 -14.71293 -14.66846 -14.37464 -14.31769 -14.03888 -14.01599 -13.74073 -13.55666 -13.37612 -13.24162 -13.11221 -13.04361 -12.95901 -12.64136 -12.61914 -12.24999 -12.10357 -11.97414 -11.80223 -11.58446 -11.50718 -11.42259 -11.27684 -10.91543 -10.66057 -10.56081 -9.92782 -9.85231 -9.25351 -8.00619 -5.32841 -0.35730 0.01366 1.30963 1.37881 1.41332 1.47969 1.77402 2.32779 2.49451 2.54120 3.19757 3.30948 3.35095 3.36393 3.45085 3.63471 3.68501 3.83303 3.94812 4.14539 4.16076 4.24532 4.32953 4.36116 4.40565 4.45837 4.49962 4.55191 4.56931 4.59422 4.61850 4.69230 4.79639 4.82563 4.89475 4.94043 5.01607 5.02126 5.05383 5.09318 5.13197 5.26355 5.38138 5.39450 5.46971 5.57906 5.80536 6.24177 6.36269 6.54880 6.78321 6.89936 7.10558 7.88023 8.05040 9.21039 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.019441 B = 0.002616 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.926249 B =10702.829220 C =10860.054312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.011 3.989 3 C -0.185 4.185 4 C 0.330 3.670 5 O -0.486 6.486 6 N -0.527 5.527 7 C 0.188 3.812 8 C -0.111 4.111 9 C -0.201 4.201 10 C 0.593 3.407 11 O -0.576 6.576 12 N -0.602 5.602 13 C 0.107 3.893 14 C -0.084 4.084 15 H 0.110 0.890 16 C -0.102 4.102 17 C -0.139 4.139 18 C 0.178 3.822 19 H 0.051 0.949 20 N -0.750 5.750 21 C -0.222 4.222 22 H 0.058 0.942 23 C -0.066 4.066 24 N -0.986 5.986 25 Si 0.951 3.049 26 H -0.284 1.284 27 H -0.299 1.299 28 H -0.249 1.249 29 C -0.102 4.102 30 H 0.085 0.915 31 C 0.116 3.884 32 H 0.083 0.917 33 H 0.111 0.889 34 H 0.061 0.939 35 H 0.178 0.822 36 H 0.426 0.574 37 H 0.103 0.897 38 H 0.091 0.909 39 H 0.063 0.937 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.080 0.920 44 H 0.058 0.942 45 H 0.048 0.952 46 H 0.364 0.636 47 H 0.256 0.744 48 H 0.068 0.932 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.511 26.814 1.821 31.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.003 3.997 3 C -0.206 4.206 4 C 0.152 3.848 5 O -0.298 6.298 6 N -0.248 5.248 7 C 0.050 3.950 8 C -0.168 4.168 9 C -0.207 4.207 10 C 0.381 3.619 11 O -0.456 6.456 12 N -0.333 5.333 13 C -0.015 4.015 14 C -0.104 4.104 15 H 0.128 0.872 16 C -0.140 4.140 17 C -0.179 4.179 18 C 0.070 3.930 19 H 0.069 0.931 20 N -0.392 5.392 21 C -0.353 4.353 22 H 0.076 0.924 23 C -0.257 4.257 24 N -0.637 5.637 25 Si 0.779 3.221 26 H -0.210 1.210 27 H -0.226 1.226 28 H -0.173 1.173 29 C -0.122 4.122 30 H 0.103 0.897 31 C -0.006 4.006 32 H 0.102 0.898 33 H 0.130 0.870 34 H 0.080 0.920 35 H 0.195 0.805 36 H 0.288 0.712 37 H 0.122 0.878 38 H 0.109 0.891 39 H 0.082 0.918 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.098 0.902 44 H 0.077 0.923 45 H 0.067 0.933 46 H 0.197 0.803 47 H 0.065 0.935 48 H 0.086 0.914 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 16.033 26.617 2.987 31.216 hybrid contribution -0.620 -1.446 0.052 1.574 sum 15.413 25.172 3.039 29.672 Atomic orbital electron populations 1.20994 0.88203 1.04766 1.03994 1.20434 0.97781 0.90547 0.90921 1.22109 0.93187 1.00006 1.05273 1.19487 0.87718 0.85064 0.92543 1.84692 1.75815 1.33102 1.36154 1.67023 1.42349 0.98310 1.17085 1.21120 0.89034 0.93626 0.91268 1.20872 1.00360 0.90847 1.04732 1.20526 0.95032 0.93623 1.11472 1.17758 0.77769 0.84169 0.82186 1.90821 1.56565 1.66238 1.32004 1.48590 1.56355 1.22120 1.06258 1.22820 1.02614 0.96475 0.79615 1.22927 1.01016 0.91964 0.94456 0.87160 1.22433 0.98889 0.96087 0.96551 1.23108 0.99851 0.97191 0.97794 1.21485 0.95223 0.82421 0.93913 0.93097 1.42823 1.10408 1.03521 1.82460 1.19003 0.89687 0.90791 1.35810 0.92427 1.25458 0.99268 0.98033 1.02948 1.69875 1.25754 1.10285 1.57737 0.85471 0.80663 0.78173 0.77836 1.21035 1.22593 1.17300 1.22765 0.97394 0.98340 0.93729 0.89689 1.22078 0.96356 0.84327 0.97886 0.89807 0.86992 0.92004 0.80490 0.71184 0.87823 0.89059 0.91789 0.89222 0.89309 0.89303 0.90172 0.92293 0.93286 0.80252 0.93527 0.91405 0.92167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.70 9.69 71.24 0.69 -1.01 16 2 C 0.01 0.19 5.95 -19.43 -0.12 0.07 16 3 C -0.19 -2.48 9.73 22.42 0.22 -2.26 16 4 C 0.33 5.48 7.74 84.82 0.66 6.13 16 5 O -0.49 -6.04 13.55 -87.99 -1.19 -7.23 16 6 N -0.53 -10.98 10.28 -295.90 -3.04 -14.03 16 7 C 0.19 3.97 6.82 42.90 0.29 4.26 16 8 C -0.11 -2.05 9.78 71.23 0.70 -1.36 16 9 C -0.20 -4.37 4.51 -20.00 -0.09 -4.46 16 10 C 0.59 15.78 4.38 86.72 0.38 16.16 16 11 O -0.58 -20.58 17.33 -3.97 -0.07 -20.65 16 12 N -0.60 -13.94 3.32 -814.96 -2.71 -16.64 16 13 C 0.11 1.71 6.42 87.19 0.56 2.27 16 14 C -0.08 -1.49 4.01 -8.73 -0.04 -1.52 16 15 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 16 C -0.10 -1.82 6.38 31.78 0.20 -1.61 16 17 C -0.14 -3.98 6.59 32.00 0.21 -3.77 16 18 C 0.18 5.98 3.00 46.14 0.14 6.12 16 19 H 0.05 1.85 7.17 -2.39 -0.02 1.83 16 20 N -0.75 -33.08 5.04 -317.49 -1.60 -34.68 16 21 C -0.22 -12.27 10.46 84.03 0.88 -11.39 16 22 H 0.06 3.50 8.06 -2.91 -0.02 3.48 16 23 C -0.07 -3.85 5.50 84.86 0.47 -3.38 16 24 N -0.99 -63.02 13.97 21.65 0.30 -62.72 16 25 Si 0.95 45.29 27.73 68.60 1.90 47.19 16 26 H -0.28 -13.43 7.11 99.48 0.71 -12.73 16 27 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 28 H -0.25 -10.51 6.52 99.48 0.65 -9.86 16 29 C -0.10 -2.65 3.55 -9.45 -0.03 -2.69 16 30 H 0.08 2.30 7.79 -2.39 -0.02 2.28 16 31 C 0.12 3.22 6.54 86.50 0.57 3.79 16 32 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.11 0.82 8.10 -2.39 -0.02 0.80 16 34 H 0.06 1.04 7.18 -2.39 -0.02 1.03 16 35 H 0.18 1.22 8.06 -2.91 -0.02 1.20 16 36 H 0.43 0.64 9.06 -74.06 -0.67 -0.03 16 37 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.06 1.41 7.06 -2.38 -0.02 1.39 16 40 H 0.09 1.22 7.20 -2.39 -0.02 1.20 16 41 H 0.09 1.16 7.51 -2.39 -0.02 1.14 16 42 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.08 1.28 7.22 -2.39 -0.02 1.26 16 44 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 45 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 46 H 0.36 15.58 5.44 -92.71 -0.50 15.07 16 47 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 48 H 0.07 2.01 7.13 -2.39 -0.02 1.99 16 49 H 0.06 1.92 7.92 -2.39 -0.02 1.90 16 Total: -1.00 -79.12 393.23 -0.97 -80.09 By element: Atomic # 1 Polarization: 23.57 SS G_CDS: -0.24 Total: 23.32 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: 5.68 Total: 5.34 kcal Atomic # 7 Polarization: -121.02 SS G_CDS: -7.05 Total: -128.06 kcal Atomic # 8 Polarization: -26.62 SS G_CDS: -1.26 Total: -27.88 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 1.90 Total: 47.19 kcal Total: -79.12 -0.97 -80.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026426230.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.164 kcal (2) G-P(sol) polarization free energy of solvation -79.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds