Wall clock time and date at job start Wed Apr 1 2020 04:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38001 * 120.82189 * 2 1 4 4 C 1.39125 * 119.26593 * 180.27439 * 3 2 1 5 5 O 1.35496 * 119.52928 * 179.72122 * 4 3 2 6 6 N 1.32444 * 120.94642 * 359.69208 * 4 3 2 7 7 C 1.31639 * 121.80051 * 0.02928 * 6 4 3 8 8 C 1.50699 * 119.68691 * 179.97438 * 7 6 4 9 9 C 1.39559 * 120.62614 * 359.97438 * 7 6 4 10 10 C 1.47609 * 120.49913 * 179.97438 * 9 7 6 11 11 O 1.21592 * 120.00040 * 90.00308 * 10 9 7 12 12 N 1.34779 * 120.00703 * 270.00110 * 10 9 7 13 13 C 1.49216 * 126.05252 * 359.96065 * 12 10 9 14 14 C 1.50318 * 104.32835 * 172.19593 * 13 12 10 15 15 H 1.09005 * 110.86007 * 279.87469 * 14 13 12 16 16 C 1.51009 * 124.69977 * 145.19016 * 14 13 12 17 17 C 1.56736 * 101.64490 * 204.37339 * 16 14 13 18 18 C 1.55940 * 105.62979 * 24.94836 * 17 16 14 19 19 H 1.08997 * 110.49404 * 126.35863 * 18 17 16 20 20 N 1.46498 * 110.49243 * 248.88759 * 18 17 16 21 21 C 1.36943 * 119.99752 * 271.46149 * 20 18 17 22 22 H 1.08002 * 119.99793 * 0.27665 * 21 20 18 23 23 C 1.38811 * 120.00012 * 180.27737 * 21 20 18 24 24 N 1.31624 * 119.99698 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00072 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47159 * 0.02562 * 25 23 21 27 27 H 1.48505 * 109.47290 * 120.00044 * 25 23 21 28 28 H 1.48503 * 109.47163 * 240.00049 * 25 23 21 29 29 C 1.50290 * 104.27543 * 7.62137 * 18 17 16 30 30 H 1.09003 * 109.99583 * 80.41289 * 29 18 17 31 31 C 1.49700 * 126.06483 * 179.97438 * 12 10 9 32 32 H 1.08994 * 109.46832 * 270.27499 * 1 2 3 33 33 H 1.08998 * 109.46694 * 30.27710 * 1 2 3 34 34 H 1.08991 * 109.46940 * 150.27375 * 1 2 3 35 35 H 1.08004 * 120.36793 * 0.02562 * 3 2 1 36 36 H 0.96696 * 113.99889 * 269.98474 * 5 4 3 37 37 H 1.09000 * 109.46885 * 270.02445 * 8 7 6 38 38 H 1.09002 * 109.46931 * 30.01831 * 8 7 6 39 39 H 1.08999 * 109.47155 * 150.01913 * 8 7 6 40 40 H 1.09001 * 110.36024 * 291.81216 * 13 12 10 41 41 H 1.08999 * 110.36548 * 54.01770 * 13 12 10 42 42 H 1.08993 * 110.99790 * 322.41981 * 16 14 13 43 43 H 1.09003 * 111.00108 * 86.22621 * 16 14 13 44 44 H 1.09001 * 110.24821 * 265.92581 * 17 16 14 45 45 H 1.08998 * 110.27380 * 143.98693 * 17 16 14 46 46 H 0.97001 * 120.00384 * 91.74505 * 20 18 17 47 47 H 0.96999 * 119.99739 * 180.02562 * 24 23 21 48 48 H 1.09003 * 110.83845 * 36.63734 * 31 12 10 49 49 H 1.08998 * 110.84380 * 273.02645 * 31 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.1851 0.0000 4 6 3.6048 1.1473 -0.0058 5 8 4.3044 2.3077 -0.0116 6 7 4.2548 -0.0066 -0.0052 7 6 3.6205 -1.1601 0.0003 8 6 4.4080 -2.4449 0.0001 9 6 2.2256 -1.2044 0.0063 10 6 1.5172 -2.4993 0.0118 11 8 1.2298 -3.0306 1.0671 12 7 1.1888 -3.0930 -1.1527 13 6 1.4729 -2.5642 -2.5188 14 6 1.0824 -3.6856 -3.4405 15 1 1.8682 -4.4396 -3.4890 16 6 0.4686 -3.5004 -4.8077 17 6 -0.2867 -4.8600 -5.0022 18 6 -0.5769 -5.3888 -3.5642 19 1 -1.6381 -5.6069 -3.4447 20 7 0.2253 -6.5824 -3.2850 21 6 -0.2567 -7.8225 -3.6091 22 1 -1.2264 -7.9202 -4.0746 23 6 0.5009 -8.9539 -3.3394 24 7 1.6824 -8.8348 -2.7716 25 14 -0.1563 -10.6454 -3.7821 26 1 -1.4969 -10.5080 -4.4058 27 1 0.7698 -11.3012 -4.7401 28 1 -0.2640 -11.4720 -2.5531 29 6 -0.1676 -4.2573 -2.6636 30 1 -0.9569 -3.5064 -2.6264 31 6 0.4742 -4.3996 -1.3051 32 1 -0.3633 0.0049 1.0276 33 1 -0.3633 0.8875 -0.5181 34 1 -0.3633 -0.8924 -0.5095 35 1 1.6936 2.1315 0.0004 36 1 4.5039 2.6423 -0.8966 37 1 4.5939 -2.7570 -1.0276 38 1 5.3587 -2.2884 0.5099 39 1 3.8411 -3.2186 0.5179 40 1 0.8796 -1.6701 -2.7103 41 1 2.5350 -2.3441 -2.6271 42 1 -0.2290 -2.6629 -4.8124 43 1 1.2391 -3.3686 -5.5673 44 1 0.3424 -5.5669 -5.5431 45 1 -1.2212 -4.6994 -5.5397 46 1 1.0961 -6.4946 -2.8668 47 1 2.2119 -9.6253 -2.5834 48 1 -0.2822 -4.5206 -0.5295 49 1 1.1791 -5.2308 -1.2940 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026426239.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:51 Heat of formation + Delta-G solvation = -11.066099 kcal Electronic energy + Delta-G solvation = -31197.179635 eV Core-core repulsion = 27125.164471 eV Total energy + Delta-G solvation = -4072.015164 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -41.26461 -40.31339 -38.68548 -37.31866 -35.25443 -34.58808 -33.35270 -32.11389 -30.89924 -29.54818 -28.55520 -28.36261 -27.77260 -25.56617 -24.20540 -23.35315 -22.68638 -21.59592 -20.05252 -19.76240 -18.94108 -18.68106 -17.58756 -17.45525 -17.21110 -16.29723 -15.92170 -15.32637 -14.99794 -14.43768 -14.42435 -14.30197 -14.12137 -13.73750 -13.67374 -13.60936 -13.54769 -13.10166 -12.93670 -12.73845 -12.50736 -12.44242 -12.22658 -12.12865 -11.93295 -11.89145 -11.56266 -11.27363 -11.01489 -10.87865 -10.69994 -10.56774 -10.31577 -10.16637 -10.08161 -9.84017 -9.71292 -9.65365 -9.55039 -9.06261 -8.95855 -8.62116 -7.01343 -5.81279 -3.10379 0.49880 0.83688 2.51150 2.78806 3.12933 3.35754 3.40902 3.46925 3.49056 4.06751 4.16142 4.23220 4.41654 4.55847 4.71239 4.86570 4.89464 4.99284 5.11678 5.20757 5.23435 5.26309 5.28868 5.35542 5.44044 5.48069 5.53152 5.58406 5.58929 5.70328 5.73337 5.77942 5.83147 5.88733 5.88855 5.96478 6.06773 6.14068 6.21007 6.22874 6.32842 6.38696 6.47908 6.61058 6.77002 7.00298 7.11069 7.46757 7.59139 7.68019 8.08696 8.37146 9.48746 10.04367 10.38732 11.41134 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017811 B = 0.002743 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.687077 B =10206.302808 C =10662.275580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.010 3.990 3 C -0.197 4.197 4 C 0.329 3.671 5 O -0.481 6.481 6 N -0.506 5.506 7 C 0.196 3.804 8 C -0.115 4.115 9 C -0.181 4.181 10 C 0.585 3.415 11 O -0.530 6.530 12 N -0.615 5.615 13 C 0.123 3.877 14 C -0.128 4.128 15 H 0.093 0.907 16 C -0.097 4.097 17 C -0.145 4.145 18 C 0.194 3.806 19 H 0.056 0.944 20 N -0.718 5.718 21 C -0.240 4.240 22 H 0.071 0.929 23 C -0.011 4.011 24 N -0.931 5.931 25 Si 0.905 3.095 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.292 1.292 29 C -0.119 4.119 30 H 0.075 0.925 31 C 0.130 3.870 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.145 0.855 36 H 0.402 0.598 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.076 0.924 45 H 0.053 0.947 46 H 0.384 0.616 47 H 0.255 0.745 48 H 0.079 0.921 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.362 22.484 -0.153 22.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.002 3.998 3 C -0.218 4.218 4 C 0.150 3.850 5 O -0.288 6.288 6 N -0.226 5.226 7 C 0.058 3.942 8 C -0.172 4.172 9 C -0.186 4.186 10 C 0.372 3.628 11 O -0.407 6.407 12 N -0.349 5.349 13 C 0.001 3.999 14 C -0.147 4.147 15 H 0.111 0.889 16 C -0.135 4.135 17 C -0.185 4.185 18 C 0.083 3.917 19 H 0.074 0.926 20 N -0.360 5.360 21 C -0.371 4.371 22 H 0.089 0.911 23 C -0.208 4.208 24 N -0.579 5.579 25 Si 0.736 3.264 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 C -0.139 4.139 30 H 0.094 0.906 31 C 0.010 3.990 32 H 0.104 0.896 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.163 0.837 36 H 0.260 0.740 37 H 0.106 0.894 38 H 0.104 0.896 39 H 0.102 0.898 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.095 0.905 45 H 0.072 0.928 46 H 0.219 0.781 47 H 0.065 0.935 48 H 0.097 0.903 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.005 22.090 1.056 22.138 hybrid contribution -0.664 -0.649 -0.633 1.124 sum 0.341 21.442 0.423 21.449 Atomic orbital electron populations 1.20932 0.89324 1.03844 1.03846 1.20191 0.96951 0.90823 0.91803 1.21843 0.93703 0.99244 1.06989 1.19236 0.87008 0.85037 0.93720 1.84731 1.76042 1.34089 1.33980 1.67005 1.41808 0.97796 1.15970 1.21060 0.89143 0.93167 0.90879 1.20904 1.00621 0.91622 1.04050 1.20695 0.94852 0.94310 1.08748 1.17452 0.78696 0.83700 0.82997 1.90849 1.54564 1.65040 1.30205 1.49907 1.57295 1.22720 1.05020 1.21285 1.00426 0.96644 0.81500 1.22254 0.99248 0.97705 0.95512 0.88899 1.21776 0.98761 0.98418 0.94518 1.23917 0.99268 0.95172 1.00190 1.20130 0.95484 0.85833 0.90255 0.92636 1.42443 1.20087 1.00532 1.72929 1.19275 1.01072 0.83698 1.33092 0.91074 1.24732 0.96725 0.97819 1.01484 1.69656 1.11725 1.28458 1.48082 0.86151 0.77877 0.84781 0.77552 1.20587 1.21946 1.21886 1.22474 0.96913 1.00308 0.94228 0.90616 1.21528 0.96276 0.84169 0.97021 0.89558 0.90227 0.90576 0.83677 0.73971 0.89365 0.89557 0.89825 0.91466 0.91490 0.92130 0.92074 0.90506 0.92837 0.78127 0.93513 0.90292 0.89370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.08 9.69 36.01 0.35 -0.73 16 2 C 0.01 0.11 5.95 -103.95 -0.62 -0.51 16 3 C -0.20 -1.85 9.73 -39.34 -0.38 -2.23 16 4 C 0.33 3.57 7.74 -16.96 -0.13 3.44 16 5 O -0.48 -4.22 13.55 -18.18 -0.25 -4.47 16 6 N -0.51 -6.50 10.29 -9.20 -0.09 -6.59 16 7 C 0.20 2.54 6.82 -82.18 -0.56 1.98 16 8 C -0.11 -1.37 9.78 36.00 0.35 -1.02 16 9 C -0.18 -2.35 4.87 -104.83 -0.51 -2.86 16 10 C 0.59 8.86 4.38 -12.44 -0.05 8.81 16 11 O -0.53 -10.03 17.43 5.28 0.09 -9.94 16 12 N -0.62 -8.62 3.43 -172.76 -0.59 -9.21 16 13 C 0.12 1.43 6.39 -3.87 -0.02 1.41 16 14 C -0.13 -1.69 2.71 -90.27 -0.24 -1.93 16 15 H 0.09 1.46 7.67 -51.93 -0.40 1.06 16 16 C -0.10 -1.18 6.71 -25.71 -0.17 -1.35 16 17 C -0.14 -2.22 6.76 -23.14 -0.16 -2.38 16 18 C 0.19 3.44 3.45 -67.71 -0.23 3.21 16 19 H 0.06 1.01 8.10 -51.93 -0.42 0.59 16 20 N -0.72 -16.42 4.83 -53.21 -0.26 -16.67 16 21 C -0.24 -6.28 9.96 -15.06 -0.15 -6.43 16 22 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 23 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 24 N -0.93 -27.09 13.06 55.49 0.72 -26.36 16 25 Si 0.91 21.81 29.55 -169.99 -5.02 16.78 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 27 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 28 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 29 C -0.12 -1.75 2.63 -90.33 -0.24 -1.99 16 30 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 31 C 0.13 2.10 6.48 -3.30 -0.02 2.08 16 32 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.08 0.49 8.10 -51.93 -0.42 0.07 16 34 H 0.08 0.75 7.18 -51.93 -0.37 0.38 16 35 H 0.15 0.96 8.06 -52.48 -0.42 0.54 16 36 H 0.40 1.40 9.06 45.56 0.41 1.81 16 37 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.08 1.12 7.06 -51.93 -0.37 0.75 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.08 1.38 7.98 -51.93 -0.41 0.97 16 45 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 46 H 0.38 9.35 6.12 -40.82 -0.25 9.10 16 47 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 48 H 0.08 1.33 8.09 -51.93 -0.42 0.91 16 49 H 0.09 1.65 6.89 -51.93 -0.36 1.29 16 LS Contribution 396.74 15.07 5.98 5.98 Total: -1.00 -32.81 396.74 -9.09 -41.90 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: -6.78 Total: 9.51 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: -2.89 Total: -0.93 kcal Atomic # 7 Polarization: -58.62 SS G_CDS: -0.22 Total: -58.84 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: -0.15 Total: -14.41 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.81 -9.09 -41.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026426239.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.837 kcal (2) G-P(sol) polarization free energy of solvation -32.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds