Wall clock time and date at job start Wed Apr 1 2020 04:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38001 * 120.82189 * 2 1 4 4 C 1.39125 * 119.26593 * 180.27439 * 3 2 1 5 5 O 1.35496 * 119.52928 * 179.72122 * 4 3 2 6 6 N 1.32444 * 120.94642 * 359.69208 * 4 3 2 7 7 C 1.31639 * 121.80051 * 0.02928 * 6 4 3 8 8 C 1.50699 * 119.68691 * 179.97438 * 7 6 4 9 9 C 1.39559 * 120.62614 * 359.97438 * 7 6 4 10 10 C 1.47609 * 120.49913 * 179.97438 * 9 7 6 11 11 O 1.21592 * 120.00040 * 90.00308 * 10 9 7 12 12 N 1.34779 * 120.00703 * 270.00110 * 10 9 7 13 13 C 1.49216 * 126.05252 * 359.96065 * 12 10 9 14 14 C 1.50318 * 104.32835 * 172.19593 * 13 12 10 15 15 H 1.09005 * 110.86007 * 279.87469 * 14 13 12 16 16 C 1.51009 * 124.69977 * 145.19016 * 14 13 12 17 17 C 1.56736 * 101.64490 * 204.37339 * 16 14 13 18 18 C 1.55940 * 105.62979 * 24.94836 * 17 16 14 19 19 H 1.08997 * 110.49404 * 126.35863 * 18 17 16 20 20 N 1.46498 * 110.49243 * 248.88759 * 18 17 16 21 21 C 1.36943 * 119.99752 * 271.46149 * 20 18 17 22 22 H 1.08002 * 119.99793 * 0.27665 * 21 20 18 23 23 C 1.38811 * 120.00012 * 180.27737 * 21 20 18 24 24 N 1.31624 * 119.99698 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00072 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47159 * 0.02562 * 25 23 21 27 27 H 1.48505 * 109.47290 * 120.00044 * 25 23 21 28 28 H 1.48503 * 109.47163 * 240.00049 * 25 23 21 29 29 C 1.50290 * 104.27543 * 7.62137 * 18 17 16 30 30 H 1.09003 * 109.99583 * 80.41289 * 29 18 17 31 31 C 1.49700 * 126.06483 * 179.97438 * 12 10 9 32 32 H 1.08994 * 109.46832 * 270.27499 * 1 2 3 33 33 H 1.08998 * 109.46694 * 30.27710 * 1 2 3 34 34 H 1.08991 * 109.46940 * 150.27375 * 1 2 3 35 35 H 1.08004 * 120.36793 * 0.02562 * 3 2 1 36 36 H 0.96696 * 113.99889 * 269.98474 * 5 4 3 37 37 H 1.09000 * 109.46885 * 270.02445 * 8 7 6 38 38 H 1.09002 * 109.46931 * 30.01831 * 8 7 6 39 39 H 1.08999 * 109.47155 * 150.01913 * 8 7 6 40 40 H 1.09001 * 110.36024 * 291.81216 * 13 12 10 41 41 H 1.08999 * 110.36548 * 54.01770 * 13 12 10 42 42 H 1.08993 * 110.99790 * 322.41981 * 16 14 13 43 43 H 1.09003 * 111.00108 * 86.22621 * 16 14 13 44 44 H 1.09001 * 110.24821 * 265.92581 * 17 16 14 45 45 H 1.08998 * 110.27380 * 143.98693 * 17 16 14 46 46 H 0.97001 * 120.00384 * 91.74505 * 20 18 17 47 47 H 0.96999 * 119.99739 * 180.02562 * 24 23 21 48 48 H 1.09003 * 110.83845 * 36.63734 * 31 12 10 49 49 H 1.08998 * 110.84380 * 273.02645 * 31 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.1851 0.0000 4 6 3.6048 1.1473 -0.0058 5 8 4.3044 2.3077 -0.0116 6 7 4.2548 -0.0066 -0.0052 7 6 3.6205 -1.1601 0.0003 8 6 4.4080 -2.4449 0.0001 9 6 2.2256 -1.2044 0.0063 10 6 1.5172 -2.4993 0.0118 11 8 1.2298 -3.0306 1.0671 12 7 1.1888 -3.0930 -1.1527 13 6 1.4729 -2.5642 -2.5188 14 6 1.0824 -3.6856 -3.4405 15 1 1.8682 -4.4396 -3.4890 16 6 0.4686 -3.5004 -4.8077 17 6 -0.2867 -4.8600 -5.0022 18 6 -0.5769 -5.3888 -3.5642 19 1 -1.6381 -5.6069 -3.4447 20 7 0.2253 -6.5824 -3.2850 21 6 -0.2567 -7.8225 -3.6091 22 1 -1.2264 -7.9202 -4.0746 23 6 0.5009 -8.9539 -3.3394 24 7 1.6824 -8.8348 -2.7716 25 14 -0.1563 -10.6454 -3.7821 26 1 -1.4969 -10.5080 -4.4058 27 1 0.7698 -11.3012 -4.7401 28 1 -0.2640 -11.4720 -2.5531 29 6 -0.1676 -4.2573 -2.6636 30 1 -0.9569 -3.5064 -2.6264 31 6 0.4742 -4.3996 -1.3051 32 1 -0.3633 0.0049 1.0276 33 1 -0.3633 0.8875 -0.5181 34 1 -0.3633 -0.8924 -0.5095 35 1 1.6936 2.1315 0.0004 36 1 4.5039 2.6423 -0.8966 37 1 4.5939 -2.7570 -1.0276 38 1 5.3587 -2.2884 0.5099 39 1 3.8411 -3.2186 0.5179 40 1 0.8796 -1.6701 -2.7103 41 1 2.5350 -2.3441 -2.6271 42 1 -0.2290 -2.6629 -4.8124 43 1 1.2391 -3.3686 -5.5673 44 1 0.3424 -5.5669 -5.5431 45 1 -1.2212 -4.6994 -5.5397 46 1 1.0961 -6.4946 -2.8668 47 1 2.2119 -9.6253 -2.5834 48 1 -0.2822 -4.5206 -0.5295 49 1 1.1791 -5.2308 -1.2940 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026426239.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:50 Heat of formation + Delta-G solvation = -35.681497 kcal Electronic energy + Delta-G solvation = -31198.247038 eV Core-core repulsion = 27125.164471 eV Total energy + Delta-G solvation = -4073.082567 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.25309 -41.39092 -39.82342 -38.13442 -36.69564 -35.40494 -35.02704 -33.04093 -32.58588 -30.76538 -29.93656 -29.09298 -28.71304 -27.00043 -25.21591 -25.15607 -23.77722 -22.41732 -21.16518 -20.81623 -20.31806 -19.44419 -19.39916 -18.34433 -18.33122 -17.57000 -16.79119 -16.67534 -16.42322 -15.82313 -15.72543 -15.26972 -15.16053 -15.00231 -14.88257 -14.63233 -14.40870 -14.36166 -14.02042 -13.79709 -13.59679 -13.41231 -13.25171 -13.16025 -13.09607 -12.97672 -12.89186 -12.66122 -12.63199 -12.37466 -12.17047 -12.04857 -11.84096 -11.52081 -11.39923 -11.27630 -10.94376 -10.86162 -10.64531 -10.55336 -9.91889 -9.83205 -8.94984 -7.91423 -5.18165 -0.34614 0.02257 1.34620 1.47642 1.48578 1.57689 1.69141 2.32502 2.54344 2.58157 2.94686 3.32688 3.34869 3.43306 3.48385 3.76558 3.90891 3.94688 4.03298 4.16102 4.24384 4.25881 4.28434 4.35344 4.42119 4.45360 4.50194 4.52772 4.59897 4.62387 4.65532 4.72674 4.79336 4.85434 4.93119 4.93948 5.00943 5.04644 5.05652 5.12057 5.18565 5.23845 5.38919 5.40659 5.46888 5.56738 5.70452 6.31419 6.33746 6.55456 6.78789 6.91261 7.37891 8.15723 8.36789 9.32119 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017811 B = 0.002743 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.687077 B =10206.302808 C =10662.275580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.012 3.988 3 C -0.182 4.182 4 C 0.329 3.671 5 O -0.486 6.486 6 N -0.528 5.528 7 C 0.186 3.814 8 C -0.112 4.112 9 C -0.199 4.199 10 C 0.590 3.410 11 O -0.579 6.579 12 N -0.609 5.609 13 C 0.129 3.871 14 C -0.114 4.114 15 H 0.058 0.942 16 C -0.081 4.081 17 C -0.138 4.138 18 C 0.183 3.817 19 H 0.051 0.949 20 N -0.730 5.730 21 C -0.230 4.230 22 H 0.077 0.923 23 C -0.077 4.077 24 N -0.970 5.970 25 Si 0.965 3.035 26 H -0.265 1.265 27 H -0.297 1.297 28 H -0.300 1.300 29 C -0.116 4.116 30 H 0.106 0.894 31 C 0.134 3.866 32 H 0.084 0.916 33 H 0.114 0.886 34 H 0.063 0.937 35 H 0.181 0.819 36 H 0.425 0.575 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.060 0.940 40 H 0.101 0.899 41 H 0.076 0.924 42 H 0.096 0.904 43 H 0.073 0.927 44 H 0.044 0.956 45 H 0.074 0.926 46 H 0.373 0.627 47 H 0.248 0.752 48 H 0.064 0.936 49 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.026 26.355 -1.786 26.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.004 3.996 3 C -0.203 4.203 4 C 0.150 3.850 5 O -0.297 6.297 6 N -0.249 5.249 7 C 0.048 3.952 8 C -0.169 4.169 9 C -0.204 4.204 10 C 0.378 3.622 11 O -0.459 6.459 12 N -0.342 5.342 13 C 0.008 3.992 14 C -0.133 4.133 15 H 0.077 0.923 16 C -0.119 4.119 17 C -0.179 4.179 18 C 0.073 3.927 19 H 0.069 0.931 20 N -0.371 5.371 21 C -0.362 4.362 22 H 0.095 0.905 23 C -0.269 4.269 24 N -0.621 5.621 25 Si 0.796 3.204 26 H -0.189 1.189 27 H -0.224 1.224 28 H -0.227 1.227 29 C -0.136 4.136 30 H 0.124 0.876 31 C 0.012 3.988 32 H 0.103 0.897 33 H 0.133 0.867 34 H 0.082 0.918 35 H 0.199 0.801 36 H 0.288 0.712 37 H 0.114 0.886 38 H 0.111 0.889 39 H 0.079 0.921 40 H 0.119 0.881 41 H 0.095 0.905 42 H 0.114 0.886 43 H 0.092 0.908 44 H 0.063 0.937 45 H 0.093 0.907 46 H 0.206 0.794 47 H 0.056 0.944 48 H 0.083 0.917 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.416 26.027 -0.653 26.038 hybrid contribution -0.240 -1.727 -0.117 1.747 sum -0.655 24.300 -0.769 24.321 Atomic orbital electron populations 1.21000 0.87799 1.04914 1.04081 1.20463 0.98015 0.90255 0.90843 1.22123 0.93015 1.00061 1.05086 1.19511 0.87850 0.84957 0.92655 1.84689 1.75864 1.33001 1.36133 1.66994 1.42479 0.98331 1.17094 1.21013 0.89213 0.93402 0.91622 1.20846 1.00551 0.91215 1.04313 1.20543 0.94866 0.93818 1.11215 1.17802 0.77868 0.84214 0.82307 1.90813 1.56600 1.66542 1.31974 1.49891 1.56552 1.21678 1.06093 1.21423 1.01741 0.96823 0.79197 1.22156 0.97346 0.97371 0.96410 0.92303 1.21730 0.99246 0.97347 0.93612 1.23711 1.00169 0.96326 0.97652 1.20444 0.94441 0.85035 0.92742 0.93117 1.42626 1.20172 1.01391 1.72900 1.19656 1.00726 0.85010 1.30792 0.90506 1.25464 0.97333 1.01209 1.02906 1.69814 1.13167 1.28652 1.50479 0.85178 0.77806 0.80737 0.76706 1.18907 1.22420 1.22731 1.22327 0.98485 0.99745 0.93005 0.87595 1.21254 0.95328 0.84437 0.97758 0.89749 0.86709 0.91837 0.80121 0.71218 0.88582 0.88917 0.92118 0.88070 0.90550 0.88587 0.90790 0.93667 0.90729 0.79441 0.94351 0.91723 0.93107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.73 9.69 71.24 0.69 -1.04 16 2 C 0.01 0.23 5.95 -19.43 -0.12 0.11 16 3 C -0.18 -2.72 9.73 22.43 0.22 -2.50 16 4 C 0.33 6.19 7.74 84.81 0.66 6.85 16 5 O -0.49 -6.93 13.55 -87.96 -1.19 -8.12 16 6 N -0.53 -12.81 10.29 -295.89 -3.04 -15.85 16 7 C 0.19 4.73 6.82 42.91 0.29 5.02 16 8 C -0.11 -2.78 9.78 71.24 0.70 -2.08 16 9 C -0.20 -5.01 4.87 -20.00 -0.10 -5.10 16 10 C 0.59 18.16 4.38 86.72 0.38 18.54 16 11 O -0.58 -23.06 17.43 -4.01 -0.07 -23.13 16 12 N -0.61 -17.07 3.43 -818.76 -2.81 -19.87 16 13 C 0.13 2.70 6.39 84.99 0.54 3.24 16 14 C -0.11 -2.82 2.71 -10.57 -0.03 -2.85 16 15 H 0.06 1.89 7.67 -2.38 -0.02 1.87 16 16 C -0.08 -1.70 6.71 31.25 0.21 -1.49 16 17 C -0.14 -4.01 6.76 32.92 0.22 -3.78 16 18 C 0.18 6.40 3.45 45.13 0.16 6.56 16 19 H 0.05 1.82 8.10 -2.39 -0.02 1.80 16 20 N -0.73 -34.53 4.83 -322.26 -1.56 -36.09 16 21 C -0.23 -12.26 9.96 84.03 0.84 -11.43 16 22 H 0.08 3.94 7.83 -2.91 -0.02 3.91 16 23 C -0.08 -4.36 5.50 84.86 0.47 -3.89 16 24 N -0.97 -59.00 13.06 21.65 0.28 -58.72 16 25 Si 0.97 45.96 29.55 68.60 2.03 47.99 16 26 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 27 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 28 H -0.30 -14.51 7.11 99.48 0.71 -13.81 16 29 C -0.12 -3.31 2.63 -10.61 -0.03 -3.34 16 30 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 31 C 0.13 4.49 6.48 85.08 0.55 5.05 16 32 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.11 0.81 8.10 -2.39 -0.02 0.79 16 34 H 0.06 1.08 7.18 -2.39 -0.02 1.07 16 35 H 0.18 1.38 8.06 -2.91 -0.02 1.35 16 36 H 0.43 1.41 9.06 -74.06 -0.67 0.74 16 37 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.06 1.76 7.06 -2.39 -0.02 1.74 16 40 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.04 1.61 7.98 -2.39 -0.02 1.59 16 45 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 46 H 0.37 19.24 6.12 -92.71 -0.57 18.67 16 47 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 48 H 0.06 2.31 8.09 -2.39 -0.02 2.30 16 49 H 0.05 2.08 6.89 -2.39 -0.02 2.07 16 Total: -1.00 -75.84 396.74 -0.96 -76.80 By element: Atomic # 1 Polarization: 29.39 SS G_CDS: -0.26 Total: 29.13 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: 5.65 Total: 7.87 kcal Atomic # 7 Polarization: -123.41 SS G_CDS: -7.12 Total: -130.54 kcal Atomic # 8 Polarization: -29.99 SS G_CDS: -1.26 Total: -31.25 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -75.84 -0.96 -76.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026426239.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.117 kcal (2) G-P(sol) polarization free energy of solvation -75.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds