Wall clock time and date at job start Wed Apr 1 2020 04:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37994 * 120.81969 * 2 1 4 4 C 1.39123 * 119.26460 * 180.24965 * 3 2 1 5 5 O 1.35500 * 119.52646 * 180.02562 * 4 3 2 6 6 N 1.32435 * 120.94923 * 0.02803 * 4 3 2 7 7 C 1.31630 * 121.80201 * 359.97438 * 6 4 3 8 8 C 1.50705 * 119.69135 * 180.02562 * 7 6 4 9 9 C 1.39571 * 120.62603 * 359.97438 * 7 6 4 10 10 C 1.47618 * 120.49835 * 179.97438 * 9 7 6 11 11 O 1.21579 * 119.99910 * 270.01964 * 10 9 7 12 12 N 1.34780 * 119.99878 * 90.02536 * 10 9 7 13 13 C 1.48350 * 128.19304 * 359.67769 * 12 10 9 14 14 C 1.54908 * 104.06935 * 138.26085 * 13 12 10 15 15 H 1.08995 * 112.54872 * 263.88774 * 14 13 12 16 16 C 1.55460 * 109.06881 * 138.46839 * 14 13 12 17 17 C 1.53955 * 106.11592 * 228.94499 * 16 14 13 18 18 C 1.53959 * 104.89006 * 29.97512 * 17 16 14 19 19 H 1.08994 * 110.20105 * 211.26552 * 18 17 16 20 20 N 1.46504 * 110.14010 * 89.57880 * 18 17 16 21 21 C 1.36938 * 119.99861 * 138.42052 * 20 18 17 22 22 H 1.07998 * 119.99955 * 359.97438 * 21 20 18 23 23 C 1.38816 * 119.99720 * 180.02562 * 21 20 18 24 24 N 1.31618 * 119.99926 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99843 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46870 * 60.00058 * 25 23 21 27 27 H 1.48497 * 109.47201 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47082 * 300.00159 * 25 23 21 29 29 C 1.53557 * 106.02987 * 330.44173 * 18 17 16 30 30 H 1.09004 * 111.66099 * 254.94024 * 29 18 17 31 31 C 1.48348 * 128.19397 * 179.97438 * 12 10 9 32 32 H 1.09002 * 109.46931 * 269.71978 * 1 2 3 33 33 H 1.08997 * 109.47185 * 29.71633 * 1 2 3 34 34 H 1.08999 * 109.46965 * 149.72057 * 1 2 3 35 35 H 1.08001 * 120.36643 * 0.25865 * 3 2 1 36 36 H 0.96691 * 114.00402 * 270.00887 * 5 4 3 37 37 H 1.08997 * 109.47044 * 269.98256 * 8 7 6 38 38 H 1.09008 * 109.46571 * 29.97863 * 8 7 6 39 39 H 1.08997 * 109.46965 * 149.97633 * 8 7 6 40 40 H 1.08996 * 110.46889 * 256.99816 * 13 12 10 41 41 H 1.09004 * 110.47088 * 19.59359 * 13 12 10 42 42 H 1.09004 * 109.75465 * 109.96441 * 16 14 13 43 43 H 1.09003 * 110.50560 * 348.32684 * 16 14 13 44 44 H 1.08998 * 110.35614 * 271.12630 * 17 16 14 45 45 H 1.09005 * 110.45129 * 148.87685 * 17 16 14 46 46 H 0.97006 * 119.99911 * 318.42494 * 20 18 17 47 47 H 0.97006 * 120.00019 * 179.97438 * 24 23 21 48 48 H 1.09002 * 110.46753 * 340.39940 * 31 12 10 49 49 H 1.08996 * 110.46914 * 103.00131 * 31 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1851 0.0000 4 6 3.6047 1.1473 -0.0053 5 8 4.3043 2.3078 -0.0048 6 7 4.2547 -0.0065 -0.0109 7 6 3.6205 -1.1600 -0.0111 8 6 4.4081 -2.4449 -0.0170 9 6 2.2255 -1.2044 -0.0050 10 6 1.5172 -2.4995 -0.0058 11 8 1.2210 -3.0296 -1.0591 12 7 1.1986 -3.0941 1.1610 13 6 1.4745 -2.6179 2.5386 14 6 0.1681 -2.9253 3.3121 15 1 -0.4968 -2.0635 3.3686 16 6 0.5292 -3.4872 4.7159 17 6 -0.3178 -4.7599 4.8976 18 6 -0.5074 -5.3155 3.4744 19 1 -1.4661 -5.8280 3.3950 20 7 0.5841 -6.2344 3.1421 21 6 0.3180 -7.4017 2.4773 22 1 -0.6965 -7.6450 2.1983 23 6 1.3523 -8.2726 2.1629 24 7 2.5885 -7.9767 2.5042 25 14 0.9894 -9.8645 1.2553 26 1 0.3691 -9.5552 -0.0580 27 1 2.2546 -10.6121 1.0419 28 1 0.0560 -10.6919 2.0611 29 6 -0.4786 -4.0995 2.5371 30 1 -1.4756 -3.8455 2.1769 31 6 0.4945 -4.3828 1.3716 32 1 -0.3633 -0.0050 1.0277 33 1 -0.3633 0.8925 -0.5094 34 1 -0.3633 -0.8875 -0.5182 35 1 1.6935 2.1314 0.0042 36 1 4.5039 2.6471 -0.8879 37 1 4.5938 -2.7524 -1.0460 38 1 5.3588 -2.2905 0.4934 39 1 3.8412 -3.2208 0.4975 40 1 2.3133 -3.1641 2.9699 41 1 1.6759 -1.5466 2.5384 42 1 0.2754 -2.7548 5.4823 43 1 1.5901 -3.7319 4.7678 44 1 -1.2830 -4.5130 5.3399 45 1 0.2098 -5.4829 5.5198 46 1 1.4954 -6.0161 3.3930 47 1 3.3112 -8.5855 2.2848 48 1 -0.0569 -4.6667 0.4752 49 1 1.2030 -5.1636 1.6478 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026426241.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:57 Heat of formation + Delta-G solvation = -41.473967 kcal Electronic energy + Delta-G solvation = -31706.511725 eV Core-core repulsion = 27633.177977 eV Total energy + Delta-G solvation = -4073.333748 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 8.06 seconds Orbital eigenvalues (eV) -42.15285 -41.09068 -39.66022 -38.12571 -36.49685 -35.40553 -35.03501 -33.01134 -32.63216 -30.57083 -29.74944 -29.09728 -28.77556 -26.67262 -25.64804 -24.97634 -23.91355 -22.42975 -21.14638 -20.66623 -19.91156 -19.44034 -19.37041 -18.44508 -18.31077 -17.27291 -16.86492 -16.75521 -16.58354 -16.00874 -15.38568 -15.32268 -15.24143 -14.99211 -14.84429 -14.39226 -14.34706 -14.10990 -14.08616 -13.86496 -13.63640 -13.45792 -13.25446 -13.09372 -13.04318 -12.97200 -12.80707 -12.64893 -12.36080 -12.23339 -12.18075 -11.91212 -11.52447 -11.41581 -11.36846 -11.33614 -11.16364 -10.92078 -10.67352 -10.54770 -9.90988 -9.79335 -8.86613 -7.91815 -5.17334 -0.35587 0.00804 1.39328 1.47037 1.49277 1.53650 1.89959 2.25681 2.57451 2.58459 3.25835 3.32733 3.41607 3.46254 3.56490 3.73687 3.85311 3.94782 4.13863 4.18282 4.24811 4.33595 4.35773 4.38470 4.47171 4.48342 4.50851 4.58862 4.62359 4.65299 4.78066 4.79654 4.81829 4.89035 4.91180 5.02190 5.05385 5.09882 5.11158 5.21431 5.24330 5.37458 5.44286 5.49362 5.53616 5.63850 5.65661 6.30674 6.51038 6.54898 6.77057 6.98447 7.38400 8.14178 8.36159 9.30208 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013536 B = 0.003417 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.136026 B = 8193.186208 C = 9066.220051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.011 3.989 3 C -0.181 4.181 4 C 0.328 3.672 5 O -0.484 6.484 6 N -0.527 5.527 7 C 0.185 3.815 8 C -0.111 4.111 9 C -0.198 4.198 10 C 0.589 3.411 11 O -0.587 6.587 12 N -0.608 5.608 13 C 0.109 3.891 14 C -0.084 4.084 15 H 0.114 0.886 16 C -0.106 4.106 17 C -0.125 4.125 18 C 0.169 3.831 19 H 0.057 0.943 20 N -0.717 5.717 21 C -0.234 4.234 22 H 0.073 0.927 23 C -0.066 4.066 24 N -0.962 5.962 25 Si 0.956 3.044 26 H -0.287 1.287 27 H -0.300 1.300 28 H -0.278 1.278 29 C -0.114 4.114 30 H 0.085 0.915 31 C 0.107 3.893 32 H 0.101 0.899 33 H 0.109 0.891 34 H 0.050 0.950 35 H 0.184 0.816 36 H 0.425 0.575 37 H 0.085 0.915 38 H 0.096 0.904 39 H 0.061 0.939 40 H 0.067 0.933 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.055 0.945 44 H 0.086 0.914 45 H 0.053 0.947 46 H 0.375 0.625 47 H 0.248 0.752 48 H 0.037 0.963 49 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.886 23.375 0.588 23.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.003 3.997 3 C -0.201 4.201 4 C 0.150 3.850 5 O -0.295 6.295 6 N -0.248 5.248 7 C 0.047 3.953 8 C -0.168 4.168 9 C -0.204 4.204 10 C 0.377 3.623 11 O -0.468 6.468 12 N -0.338 5.338 13 C -0.013 4.013 14 C -0.103 4.103 15 H 0.132 0.868 16 C -0.143 4.143 17 C -0.164 4.164 18 C 0.059 3.941 19 H 0.075 0.925 20 N -0.356 5.356 21 C -0.366 4.366 22 H 0.091 0.909 23 C -0.259 4.259 24 N -0.612 5.612 25 Si 0.787 3.213 26 H -0.213 1.213 27 H -0.226 1.226 28 H -0.204 1.204 29 C -0.136 4.136 30 H 0.103 0.897 31 C -0.015 4.015 32 H 0.120 0.880 33 H 0.128 0.872 34 H 0.069 0.931 35 H 0.201 0.799 36 H 0.287 0.713 37 H 0.103 0.897 38 H 0.115 0.885 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.106 0.894 42 H 0.109 0.891 43 H 0.073 0.927 44 H 0.105 0.895 45 H 0.072 0.928 46 H 0.208 0.792 47 H 0.057 0.943 48 H 0.055 0.945 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.229 23.005 0.455 23.235 hybrid contribution -0.113 -1.513 -1.322 2.013 sum -3.341 21.491 -0.867 21.767 Atomic orbital electron populations 1.20985 0.87794 1.04228 1.04639 1.20472 0.98071 0.90212 0.90918 1.22120 0.92992 0.99994 1.05025 1.19506 0.87864 0.84965 0.92691 1.84675 1.75852 1.32841 1.36107 1.66976 1.42484 0.98280 1.17039 1.20970 0.89233 0.93343 0.91761 1.20814 1.00775 0.91354 1.03837 1.20564 0.94875 0.93953 1.10980 1.17777 0.78064 0.84249 0.82191 1.90780 1.57017 1.66843 1.32138 1.49293 1.55890 1.22836 1.05828 1.22856 0.98339 1.00113 0.79973 1.22978 0.94982 0.97974 0.94378 0.86828 1.22394 0.99475 0.96833 0.95640 1.22488 1.00740 0.96902 0.96266 1.20988 0.91242 0.89075 0.92799 0.92498 1.42601 1.05866 1.19916 1.67231 1.19530 0.93209 0.96536 1.27325 0.90878 1.25326 0.95477 1.01773 1.03360 1.69762 0.99138 1.38569 1.53774 0.85465 0.76174 0.80904 0.78767 1.21333 1.22608 1.20372 1.23111 0.97914 0.97000 0.95550 0.89654 1.22896 0.96386 0.85082 0.97142 0.88022 0.87248 0.93116 0.79915 0.71317 0.89669 0.88493 0.92052 0.91483 0.89405 0.89087 0.92672 0.89508 0.92819 0.79171 0.94297 0.94463 0.88777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.03 9.68 71.24 0.69 -1.34 16 2 C 0.01 0.24 5.95 -19.43 -0.12 0.12 16 3 C -0.18 -3.07 9.72 22.42 0.22 -2.85 16 4 C 0.33 6.88 7.74 84.81 0.66 7.53 16 5 O -0.48 -7.66 13.55 -88.01 -1.19 -8.85 16 6 N -0.53 -14.19 10.28 -295.88 -3.04 -17.24 16 7 C 0.19 5.38 6.82 42.91 0.29 5.67 16 8 C -0.11 -3.24 9.78 71.24 0.70 -2.55 16 9 C -0.20 -5.73 4.57 -19.99 -0.09 -5.83 16 10 C 0.59 21.00 4.43 86.72 0.38 21.39 16 11 O -0.59 -26.18 17.39 -3.96 -0.07 -26.25 16 12 N -0.61 -20.42 3.31 -809.38 -2.68 -23.10 16 13 C 0.11 2.89 6.48 86.68 0.56 3.45 16 14 C -0.08 -1.94 4.06 -8.67 -0.04 -1.97 16 15 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 16 C -0.11 -2.39 6.41 31.76 0.20 -2.18 16 17 C -0.13 -3.40 6.50 31.24 0.20 -3.20 16 18 C 0.17 5.82 3.54 45.50 0.16 5.98 16 19 H 0.06 2.02 7.91 -2.39 -0.02 2.00 16 20 N -0.72 -32.64 2.88 -320.52 -0.92 -33.56 16 21 C -0.23 -12.27 9.45 84.03 0.79 -11.48 16 22 H 0.07 3.73 7.74 -2.91 -0.02 3.71 16 23 C -0.07 -3.71 5.50 84.86 0.47 -3.24 16 24 N -0.96 -57.06 13.06 21.65 0.28 -56.77 16 25 Si 0.96 46.17 29.55 68.60 2.03 48.19 16 26 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 27 H -0.30 -14.75 7.11 99.48 0.71 -14.05 16 28 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 29 C -0.11 -3.46 3.88 -9.48 -0.04 -3.50 16 30 H 0.09 2.38 8.14 -2.38 -0.02 2.36 16 31 C 0.11 4.18 6.25 86.52 0.54 4.72 16 32 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.11 1.15 8.10 -2.39 -0.02 1.13 16 34 H 0.05 1.17 7.19 -2.39 -0.02 1.16 16 35 H 0.18 1.68 8.06 -2.91 -0.02 1.66 16 36 H 0.42 2.27 9.06 -74.06 -0.67 1.60 16 37 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 38 H 0.10 2.52 8.14 -2.38 -0.02 2.50 16 39 H 0.06 2.04 7.07 -2.39 -0.02 2.02 16 40 H 0.07 1.96 7.25 -2.39 -0.02 1.94 16 41 H 0.09 1.95 7.43 -2.39 -0.02 1.93 16 42 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.05 1.41 7.20 -2.39 -0.02 1.39 16 44 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 45 H 0.05 1.68 8.09 -2.38 -0.02 1.66 16 46 H 0.38 18.57 7.62 -92.70 -0.71 17.86 16 47 H 0.25 14.60 8.31 -92.70 -0.77 13.83 16 48 H 0.04 1.64 7.88 -2.39 -0.02 1.62 16 49 H 0.09 4.49 5.22 -2.39 -0.01 4.47 16 Total: -1.00 -73.69 393.21 -0.39 -74.08 By element: Atomic # 1 Polarization: 33.13 SS G_CDS: -0.38 Total: 32.75 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: 5.59 Total: 10.74 kcal Atomic # 7 Polarization: -124.31 SS G_CDS: -6.36 Total: -130.67 kcal Atomic # 8 Polarization: -33.83 SS G_CDS: -1.26 Total: -35.09 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.19 kcal Total: -73.69 -0.39 -74.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026426241.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.611 kcal (2) G-P(sol) polarization free energy of solvation -73.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.07 seconds