Wall clock time and date at job start Wed Apr 1 2020 03:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37990 * 120.81966 * 2 1 4 4 C 1.39130 * 119.26196 * 180.28262 * 3 2 1 5 5 O 1.35506 * 119.52380 * 179.70711 * 4 3 2 6 6 N 1.32431 * 120.95108 * 359.43133 * 4 3 2 7 7 C 1.31637 * 121.79949 * 0.27647 * 6 4 3 8 8 C 1.39559 * 120.62553 * 0.02562 * 7 6 4 9 9 C 1.47622 * 120.50044 * 179.97438 * 8 7 6 10 10 O 1.21577 * 119.99839 * 125.99689 * 9 8 7 11 11 N 1.34776 * 119.99808 * 305.99699 * 9 8 7 12 12 C 1.46931 * 120.55606 * 3.73610 * 11 9 8 13 13 C 1.52860 * 108.94707 * 234.29963 * 12 11 9 14 14 C 1.52115 * 109.51975 * 306.94311 * 13 12 11 15 15 C 1.54387 * 110.51242 * 295.74987 * 14 13 12 16 16 C 1.54460 * 102.87271 * 276.65665 * 15 14 13 17 17 N 1.47080 * 107.29499 * 338.50291 * 16 15 14 18 18 C 1.36940 * 125.62494 * 179.01113 * 17 16 15 19 19 H 1.08005 * 119.99525 * 180.02562 * 18 17 16 20 20 C 1.38811 * 119.99996 * 0.02562 * 18 17 16 21 21 N 1.31612 * 120.00011 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99761 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47290 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.46986 * 119.99725 * 22 20 18 25 25 H 1.48497 * 109.47226 * 239.99546 * 22 20 18 26 26 C 1.47572 * 108.74583 * 359.00856 * 17 16 15 27 27 C 1.52109 * 111.59686 * 59.15304 * 14 13 12 28 28 C 1.46932 * 120.55118 * 184.01250 * 11 9 8 29 29 H 1.09002 * 109.46821 * 264.93344 * 1 2 3 30 30 H 1.08993 * 109.47245 * 24.93418 * 1 2 3 31 31 H 1.09000 * 109.46852 * 144.93367 * 1 2 3 32 32 H 1.08002 * 120.37071 * 0.02562 * 3 2 1 33 33 H 0.96699 * 114.00051 * 269.72734 * 5 4 3 34 34 H 1.07999 * 119.68715 * 180.02562 * 7 6 4 35 35 H 1.09004 * 109.59720 * 354.10949 * 12 11 9 36 36 H 1.09004 * 109.59923 * 114.57946 * 12 11 9 37 37 H 1.09005 * 109.55217 * 186.86759 * 13 12 11 38 38 H 1.08993 * 109.33525 * 66.88908 * 13 12 11 39 39 H 1.09007 * 110.73655 * 35.00704 * 15 14 13 40 40 H 1.09006 * 110.73366 * 158.31451 * 15 14 13 41 41 H 1.09004 * 109.87461 * 97.92573 * 16 15 14 42 42 H 1.09000 * 109.87851 * 219.07338 * 16 15 14 43 43 H 0.97008 * 119.99718 * 180.02562 * 21 20 18 44 44 H 1.09000 * 110.37456 * 264.49606 * 26 17 16 45 45 H 1.09000 * 110.37778 * 142.14788 * 26 17 16 46 46 H 1.09009 * 109.47063 * 180.71851 * 27 14 13 47 47 H 1.08999 * 109.47840 * 60.70472 * 27 14 13 48 48 H 1.09003 * 109.59624 * 245.41256 * 28 11 9 49 49 H 1.08997 * 109.59970 * 5.89248 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2140 1.1850 0.0000 4 6 3.6048 1.1472 -0.0060 5 8 4.3043 2.3077 -0.0120 6 7 4.2548 -0.0066 -0.0004 7 6 3.6205 -1.1600 0.0056 8 6 2.2257 -1.2044 0.0057 9 6 1.5172 -2.4995 0.0119 10 8 0.6825 -2.7317 0.8648 11 7 1.7957 -3.4244 -0.9280 12 6 2.8589 -3.1900 -1.9147 13 6 2.2801 -3.3639 -3.3188 14 6 1.5865 -4.7139 -3.4190 15 6 2.6067 -5.8602 -3.2498 16 6 3.1957 -6.0091 -4.6700 17 7 2.2246 -5.4276 -5.6092 18 6 2.3798 -5.3445 -6.9673 19 1 1.6055 -4.8971 -7.5728 20 6 3.5323 -5.8352 -7.5654 21 7 4.4756 -6.3808 -6.8275 22 14 3.7436 -5.7224 -9.4180 23 1 2.5491 -5.0717 -10.0138 24 1 4.9523 -4.9181 -9.7303 25 1 3.8978 -7.0872 -9.9827 26 6 1.0555 -4.9487 -4.8467 27 6 0.4647 -4.8440 -2.4000 28 6 1.0372 -4.6814 -0.9868 29 1 -0.3633 -0.0908 1.0237 30 1 -0.3633 0.9318 -0.4332 31 1 -0.3633 -0.8411 -0.5904 32 1 1.6936 2.1314 0.0004 33 1 4.5071 2.6401 -0.8972 34 1 4.1850 -2.0808 0.0105 35 1 3.2447 -2.1767 -1.8028 36 1 3.6639 -3.9090 -1.7626 37 1 3.0837 -3.3129 -4.0535 38 1 1.5593 -2.5697 -3.5128 39 1 3.3835 -5.5835 -2.5369 40 1 2.1075 -6.7787 -2.9410 41 1 4.1425 -5.4730 -4.7365 42 1 3.3477 -7.0637 -4.8995 43 1 5.2812 -6.7234 -7.2455 44 1 0.2709 -5.7052 -4.8401 45 1 0.6817 -4.0166 -5.2706 46 1 0.0010 -5.8262 -2.4934 47 1 -0.2821 -4.0709 -2.5808 48 1 1.6983 -5.5182 -0.7615 49 1 0.2224 -4.6509 -0.2635 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035223415.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:59 Heat of formation + Delta-G solvation = -8.898347 kcal Electronic energy + Delta-G solvation = -31331.844265 eV Core-core repulsion = 27259.923102 eV Total energy + Delta-G solvation = -4071.921163 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.33553 -40.09460 -38.69300 -37.32037 -35.89541 -34.20361 -33.22684 -31.81468 -30.65760 -30.33005 -28.76532 -28.34654 -26.83235 -24.82613 -23.96296 -23.49766 -22.76117 -22.23373 -20.30151 -20.04551 -18.75024 -18.28794 -17.73120 -17.16982 -16.62889 -16.32275 -16.00940 -15.16982 -15.10718 -14.86836 -14.62033 -14.41440 -13.96388 -13.89062 -13.70062 -13.49567 -13.34837 -13.11479 -12.94192 -12.73866 -12.57516 -12.38075 -12.19851 -12.06476 -11.94244 -11.72345 -11.15440 -11.08715 -10.96507 -10.75498 -10.64823 -10.29307 -10.23129 -10.04387 -9.91947 -9.83915 -9.70708 -9.65350 -9.60078 -9.21432 -8.64678 -8.59824 -6.83296 -5.72977 -3.05830 0.35895 0.79889 2.42184 2.78839 3.16543 3.37582 3.38002 3.43547 3.45697 4.14426 4.22830 4.30996 4.47885 4.64100 4.82712 4.84899 4.93913 4.99073 5.05332 5.16310 5.26707 5.30781 5.32070 5.40771 5.44233 5.45424 5.53250 5.65117 5.66873 5.74062 5.85149 5.90813 5.94580 6.05055 6.05822 6.10911 6.16685 6.27177 6.37904 6.49701 6.58034 6.59443 6.78889 6.90540 7.08038 7.25772 7.48959 7.55325 7.61552 7.81560 7.96471 8.24449 9.21147 9.81442 10.47838 11.38559 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013493 B = 0.002941 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.711926 B = 9517.311297 C =10633.221616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.021 3.979 3 C -0.192 4.192 4 C 0.329 3.671 5 O -0.482 6.482 6 N -0.506 5.506 7 C 0.162 3.838 8 C -0.191 4.191 9 C 0.568 3.432 10 O -0.536 6.536 11 N -0.596 5.596 12 C 0.098 3.902 13 C -0.109 4.109 14 C -0.072 4.072 15 C -0.137 4.137 16 C 0.180 3.820 17 N -0.604 5.604 18 C -0.226 4.226 19 H 0.077 0.923 20 C -0.008 4.008 21 N -0.921 5.921 22 Si 0.909 3.091 23 H -0.281 1.281 24 H -0.291 1.291 25 H -0.291 1.291 26 C 0.147 3.853 27 C -0.116 4.116 28 C 0.115 3.885 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.147 0.853 33 H 0.405 0.595 34 H 0.168 0.832 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.056 0.944 41 H 0.044 0.956 42 H 0.039 0.961 43 H 0.251 0.749 44 H 0.018 0.982 45 H 0.036 0.964 46 H 0.077 0.923 47 H 0.062 0.938 48 H 0.072 0.928 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.330 12.462 14.247 19.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.013 3.987 3 C -0.213 4.213 4 C 0.151 3.849 5 O -0.289 6.289 6 N -0.225 5.225 7 C 0.004 3.996 8 C -0.196 4.196 9 C 0.355 3.645 10 O -0.414 6.414 11 N -0.328 5.328 12 C -0.024 4.024 13 C -0.148 4.148 14 C -0.073 4.073 15 C -0.175 4.175 16 C 0.055 3.945 17 N -0.331 5.331 18 C -0.355 4.355 19 H 0.094 0.906 20 C -0.204 4.204 21 N -0.569 5.569 22 Si 0.740 3.260 23 H -0.206 1.206 24 H -0.218 1.218 25 H -0.218 1.218 26 C 0.020 3.980 27 C -0.154 4.154 28 C -0.007 4.007 29 H 0.107 0.893 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.165 0.835 33 H 0.263 0.737 34 H 0.185 0.815 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.108 0.892 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.063 0.937 42 H 0.058 0.942 43 H 0.061 0.939 44 H 0.036 0.964 45 H 0.054 0.946 46 H 0.095 0.905 47 H 0.081 0.919 48 H 0.091 0.909 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.738 12.306 15.116 20.059 hybrid contribution -0.420 0.088 -1.637 1.693 sum -5.158 12.394 13.478 19.023 Atomic orbital electron populations 1.20893 0.89082 1.03427 1.04037 1.20208 0.97230 0.90690 0.90596 1.21930 0.93752 0.99410 1.06201 1.19334 0.87069 0.85244 0.93214 1.84717 1.75940 1.34091 1.34187 1.67197 1.41861 0.98183 1.15237 1.22760 0.89982 0.95415 0.91433 1.20872 0.95479 0.94520 1.08712 1.17929 0.82153 0.82998 0.81455 1.90784 1.34266 1.79281 1.37049 1.48104 1.36140 1.18264 1.30319 1.22059 0.89650 1.01982 0.88735 1.21533 1.01214 0.96722 0.95286 1.21033 0.95265 0.95042 0.95937 1.22941 0.97695 0.96631 1.00268 1.21142 0.91926 0.98077 0.83352 1.44513 1.16091 1.69790 1.02676 1.19091 1.01972 1.33371 0.81050 0.90561 1.24772 0.96808 1.00950 0.97891 1.69973 1.08621 1.45176 1.33117 0.86083 0.77507 0.77249 0.85157 1.20580 1.21807 1.21803 1.21464 0.90887 0.96504 0.89097 1.21739 0.97840 1.02391 0.93463 1.21708 0.96265 0.84617 0.98129 0.89293 0.90706 0.90546 0.83524 0.73665 0.81526 0.90042 0.90255 0.89191 0.92272 0.92238 0.92484 0.93737 0.94237 0.93876 0.96431 0.94606 0.90466 0.91926 0.90931 0.89196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.04 9.10 36.01 0.33 -0.71 16 2 C 0.02 0.21 5.94 -103.96 -0.62 -0.40 16 3 C -0.19 -1.74 9.71 -39.34 -0.38 -2.12 16 4 C 0.33 3.43 7.74 -16.96 -0.13 3.30 16 5 O -0.48 -4.18 13.55 -18.21 -0.25 -4.43 16 6 N -0.51 -6.03 10.37 -12.96 -0.13 -6.16 16 7 C 0.16 1.80 8.60 -17.14 -0.15 1.65 16 8 C -0.19 -2.19 4.89 -104.82 -0.51 -2.71 16 9 C 0.57 7.32 6.26 -12.43 -0.08 7.25 16 10 O -0.54 -8.26 15.68 5.30 0.08 -8.18 16 11 N -0.60 -7.22 2.97 -174.06 -0.52 -7.73 16 12 C 0.10 1.16 5.21 -3.88 -0.02 1.14 16 13 C -0.11 -1.57 4.84 -27.25 -0.13 -1.71 16 14 C -0.07 -1.10 0.55 -154.10 -0.08 -1.19 16 15 C -0.14 -2.30 4.92 -25.24 -0.12 -2.43 16 16 C 0.18 4.10 5.00 -2.96 -0.01 4.09 16 17 N -0.60 -14.64 3.39 -170.31 -0.58 -15.22 16 18 C -0.23 -6.12 10.28 -15.06 -0.15 -6.28 16 19 H 0.08 2.01 7.83 -52.48 -0.41 1.60 16 20 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 21 N -0.92 -26.36 10.31 55.49 0.57 -25.78 16 22 Si 0.91 21.71 29.55 -169.99 -5.02 16.69 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 26 C 0.15 2.84 6.15 -2.87 -0.02 2.83 16 27 C -0.12 -1.47 4.84 -27.01 -0.13 -1.60 16 28 C 0.11 1.36 6.16 -3.63 -0.02 1.34 16 29 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 0.48 8.07 -51.93 -0.42 0.06 16 31 H 0.08 0.76 7.29 -51.93 -0.38 0.39 16 32 H 0.15 0.95 8.06 -52.49 -0.42 0.53 16 33 H 0.40 1.50 9.06 45.56 0.41 1.91 16 34 H 0.17 1.58 7.36 -52.49 -0.39 1.19 16 35 H 0.08 0.89 4.70 -51.93 -0.24 0.64 16 36 H 0.08 0.91 6.56 -51.93 -0.34 0.57 16 37 H 0.09 1.54 7.82 -51.93 -0.41 1.13 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.06 0.90 6.19 -51.93 -0.32 0.58 16 40 H 0.06 0.92 7.98 -51.93 -0.41 0.50 16 41 H 0.04 1.12 7.39 -51.93 -0.38 0.74 16 42 H 0.04 1.03 7.50 -51.93 -0.39 0.64 16 43 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 44 H 0.02 0.35 7.99 -51.93 -0.41 -0.06 16 45 H 0.04 0.69 8.02 -51.93 -0.42 0.28 16 46 H 0.08 0.94 8.10 -51.92 -0.42 0.52 16 47 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 48 H 0.07 0.83 7.62 -51.93 -0.40 0.43 16 49 H 0.09 1.09 7.01 -51.93 -0.36 0.73 16 LS Contribution 380.06 15.07 5.73 5.73 Total: -1.00 -33.12 380.06 -8.97 -42.09 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -6.52 Total: 0.86 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: -2.34 Total: 2.14 kcal Atomic # 7 Polarization: -54.24 SS G_CDS: -0.66 Total: -54.90 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: -0.16 Total: -12.60 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.12 -8.97 -42.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035223415.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.190 kcal (2) G-P(sol) polarization free energy of solvation -33.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds