Wall clock time and date at job start Wed Apr 1 2020 03:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37990 * 120.81966 * 2 1 4 4 C 1.39130 * 119.26196 * 180.28262 * 3 2 1 5 5 O 1.35506 * 119.52380 * 179.70711 * 4 3 2 6 6 N 1.32431 * 120.95108 * 359.43133 * 4 3 2 7 7 C 1.31637 * 121.79949 * 0.27647 * 6 4 3 8 8 C 1.39559 * 120.62553 * 0.02562 * 7 6 4 9 9 C 1.47622 * 120.50044 * 179.97438 * 8 7 6 10 10 O 1.21577 * 119.99839 * 125.99689 * 9 8 7 11 11 N 1.34776 * 119.99808 * 305.99699 * 9 8 7 12 12 C 1.46931 * 120.55606 * 3.73610 * 11 9 8 13 13 C 1.52860 * 108.94707 * 234.29963 * 12 11 9 14 14 C 1.52115 * 109.51975 * 306.94311 * 13 12 11 15 15 C 1.54387 * 110.51242 * 295.74987 * 14 13 12 16 16 C 1.54460 * 102.87271 * 276.65665 * 15 14 13 17 17 N 1.47080 * 107.29499 * 338.50291 * 16 15 14 18 18 C 1.36940 * 125.62494 * 179.01113 * 17 16 15 19 19 H 1.08005 * 119.99525 * 180.02562 * 18 17 16 20 20 C 1.38811 * 119.99996 * 0.02562 * 18 17 16 21 21 N 1.31612 * 120.00011 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99761 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47290 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.46986 * 119.99725 * 22 20 18 25 25 H 1.48497 * 109.47226 * 239.99546 * 22 20 18 26 26 C 1.47572 * 108.74583 * 359.00856 * 17 16 15 27 27 C 1.52109 * 111.59686 * 59.15304 * 14 13 12 28 28 C 1.46932 * 120.55118 * 184.01250 * 11 9 8 29 29 H 1.09002 * 109.46821 * 264.93344 * 1 2 3 30 30 H 1.08993 * 109.47245 * 24.93418 * 1 2 3 31 31 H 1.09000 * 109.46852 * 144.93367 * 1 2 3 32 32 H 1.08002 * 120.37071 * 0.02562 * 3 2 1 33 33 H 0.96699 * 114.00051 * 269.72734 * 5 4 3 34 34 H 1.07999 * 119.68715 * 180.02562 * 7 6 4 35 35 H 1.09004 * 109.59720 * 354.10949 * 12 11 9 36 36 H 1.09004 * 109.59923 * 114.57946 * 12 11 9 37 37 H 1.09005 * 109.55217 * 186.86759 * 13 12 11 38 38 H 1.08993 * 109.33525 * 66.88908 * 13 12 11 39 39 H 1.09007 * 110.73655 * 35.00704 * 15 14 13 40 40 H 1.09006 * 110.73366 * 158.31451 * 15 14 13 41 41 H 1.09004 * 109.87461 * 97.92573 * 16 15 14 42 42 H 1.09000 * 109.87851 * 219.07338 * 16 15 14 43 43 H 0.97008 * 119.99718 * 180.02562 * 21 20 18 44 44 H 1.09000 * 110.37456 * 264.49606 * 26 17 16 45 45 H 1.09000 * 110.37778 * 142.14788 * 26 17 16 46 46 H 1.09009 * 109.47063 * 180.71851 * 27 14 13 47 47 H 1.08999 * 109.47840 * 60.70472 * 27 14 13 48 48 H 1.09003 * 109.59624 * 245.41256 * 28 11 9 49 49 H 1.08997 * 109.59970 * 5.89248 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2140 1.1850 0.0000 4 6 3.6048 1.1472 -0.0060 5 8 4.3043 2.3077 -0.0120 6 7 4.2548 -0.0066 -0.0004 7 6 3.6205 -1.1600 0.0056 8 6 2.2257 -1.2044 0.0057 9 6 1.5172 -2.4995 0.0119 10 8 0.6825 -2.7317 0.8648 11 7 1.7957 -3.4244 -0.9280 12 6 2.8589 -3.1900 -1.9147 13 6 2.2801 -3.3639 -3.3188 14 6 1.5865 -4.7139 -3.4190 15 6 2.6067 -5.8602 -3.2498 16 6 3.1957 -6.0091 -4.6700 17 7 2.2246 -5.4276 -5.6092 18 6 2.3798 -5.3445 -6.9673 19 1 1.6055 -4.8971 -7.5728 20 6 3.5323 -5.8352 -7.5654 21 7 4.4756 -6.3808 -6.8275 22 14 3.7436 -5.7224 -9.4180 23 1 2.5491 -5.0717 -10.0138 24 1 4.9523 -4.9181 -9.7303 25 1 3.8978 -7.0872 -9.9827 26 6 1.0555 -4.9487 -4.8467 27 6 0.4647 -4.8440 -2.4000 28 6 1.0372 -4.6814 -0.9868 29 1 -0.3633 -0.0908 1.0237 30 1 -0.3633 0.9318 -0.4332 31 1 -0.3633 -0.8411 -0.5904 32 1 1.6936 2.1314 0.0004 33 1 4.5071 2.6401 -0.8972 34 1 4.1850 -2.0808 0.0105 35 1 3.2447 -2.1767 -1.8028 36 1 3.6639 -3.9090 -1.7626 37 1 3.0837 -3.3129 -4.0535 38 1 1.5593 -2.5697 -3.5128 39 1 3.3835 -5.5835 -2.5369 40 1 2.1075 -6.7787 -2.9410 41 1 4.1425 -5.4730 -4.7365 42 1 3.3477 -7.0637 -4.8995 43 1 5.2812 -6.7234 -7.2455 44 1 0.2709 -5.7052 -4.8401 45 1 0.6817 -4.0166 -5.2706 46 1 0.0010 -5.8262 -2.4934 47 1 -0.2821 -4.0709 -2.5808 48 1 1.6983 -5.5182 -0.7615 49 1 0.2224 -4.6509 -0.2635 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035223415.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:57 Heat of formation + Delta-G solvation = -32.895119 kcal Electronic energy + Delta-G solvation = -31332.884843 eV Core-core repulsion = 27259.923102 eV Total energy + Delta-G solvation = -4072.961741 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.21813 -41.11755 -39.87270 -38.06027 -37.25088 -35.01200 -34.79109 -33.01721 -32.13538 -31.27828 -30.41477 -29.09734 -28.24293 -26.20410 -25.26148 -24.53925 -23.81181 -23.15504 -21.94822 -21.21375 -19.56740 -19.39634 -18.83828 -18.42324 -17.88841 -17.25638 -16.87217 -16.78977 -16.34629 -16.10080 -15.66541 -15.61914 -15.31299 -14.88856 -14.76148 -14.62128 -14.25142 -14.14058 -14.02411 -13.90002 -13.78819 -13.55046 -13.38145 -13.10856 -13.03009 -12.94512 -12.77674 -12.73080 -12.27165 -12.23710 -12.08040 -11.93147 -11.77218 -11.48320 -11.31870 -11.14530 -11.03756 -10.67523 -10.66990 -10.49916 -10.01449 -9.66064 -8.83264 -7.82145 -5.16021 -0.41873 0.04839 1.46321 1.46685 1.47651 1.56701 1.86954 2.42268 2.50937 2.63253 3.28956 3.36136 3.49345 3.55712 3.62405 3.73427 3.77358 3.92144 3.96805 4.13055 4.18088 4.22393 4.32562 4.37042 4.48820 4.57743 4.59798 4.64843 4.66539 4.68002 4.73343 4.81808 4.85254 4.90259 4.98298 5.00637 5.09281 5.13004 5.17223 5.19513 5.37162 5.38355 5.44404 5.49590 5.60623 5.75099 5.85243 6.23856 6.27367 6.52722 6.77182 6.99115 7.14905 7.82784 8.47130 9.27894 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013493 B = 0.002941 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.711926 B = 9517.311297 C =10633.221616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.015 3.985 3 C -0.184 4.184 4 C 0.325 3.675 5 O -0.488 6.488 6 N -0.531 5.531 7 C 0.159 3.841 8 C -0.207 4.207 9 C 0.573 3.427 10 O -0.563 6.563 11 N -0.593 5.593 12 C 0.108 3.892 13 C -0.104 4.104 14 C -0.057 4.057 15 C -0.121 4.121 16 C 0.189 3.811 17 N -0.624 5.624 18 C -0.238 4.238 19 H 0.078 0.922 20 C -0.064 4.064 21 N -0.949 5.949 22 Si 0.972 3.028 23 H -0.267 1.267 24 H -0.293 1.293 25 H -0.295 1.295 26 C 0.141 3.859 27 C -0.106 4.106 28 C 0.117 3.883 29 H 0.086 0.914 30 H 0.100 0.900 31 H 0.062 0.938 32 H 0.175 0.825 33 H 0.425 0.575 34 H 0.177 0.823 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.059 0.941 38 H 0.063 0.937 39 H 0.081 0.919 40 H 0.070 0.930 41 H 0.011 0.989 42 H -0.002 1.002 43 H 0.245 0.755 44 H 0.022 0.978 45 H 0.036 0.964 46 H 0.087 0.913 47 H 0.067 0.933 48 H 0.083 0.917 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.452 14.027 15.201 21.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.007 3.993 3 C -0.204 4.204 4 C 0.147 3.853 5 O -0.300 6.300 6 N -0.251 5.251 7 C 0.001 3.999 8 C -0.212 4.212 9 C 0.361 3.639 10 O -0.443 6.443 11 N -0.325 5.325 12 C -0.014 4.014 13 C -0.142 4.142 14 C -0.058 4.058 15 C -0.159 4.159 16 C 0.064 3.936 17 N -0.350 5.350 18 C -0.367 4.367 19 H 0.096 0.904 20 C -0.257 4.257 21 N -0.598 5.598 22 Si 0.801 3.199 23 H -0.192 1.192 24 H -0.220 1.220 25 H -0.222 1.222 26 C 0.016 3.984 27 C -0.144 4.144 28 C -0.005 4.005 29 H 0.105 0.895 30 H 0.119 0.881 31 H 0.081 0.919 32 H 0.193 0.807 33 H 0.287 0.713 34 H 0.194 0.806 35 H 0.111 0.889 36 H 0.104 0.896 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.100 0.900 40 H 0.089 0.911 41 H 0.029 0.971 42 H 0.016 0.984 43 H 0.054 0.946 44 H 0.039 0.961 45 H 0.054 0.946 46 H 0.106 0.894 47 H 0.086 0.914 48 H 0.101 0.899 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.884 13.894 16.061 22.037 hybrid contribution -0.088 -0.325 -1.958 1.987 sum -5.972 13.569 14.102 20.461 Atomic orbital electron populations 1.20904 0.88135 1.04237 1.03844 1.20465 0.98008 0.90666 0.90133 1.22152 0.93217 1.00164 1.04903 1.19579 0.87782 0.85278 0.92622 1.84673 1.75813 1.33357 1.36113 1.67211 1.42649 0.98879 1.16338 1.22890 0.89955 0.95725 0.91305 1.20853 0.95706 0.94350 1.10298 1.18072 0.81616 0.83282 0.80935 1.90768 1.35581 1.79820 1.38108 1.48104 1.36018 1.18288 1.30061 1.21960 0.89442 1.03046 0.86943 1.21423 1.00298 0.96267 0.96207 1.20937 0.95659 0.94964 0.94274 1.22801 0.98489 0.97990 0.96598 1.20889 0.91186 0.94840 0.86709 1.44794 1.17812 1.69969 1.02441 1.19451 1.01881 1.32546 0.82805 0.90385 1.25552 0.96845 1.01368 1.01968 1.70190 1.08847 1.46301 1.34465 0.85095 0.77565 0.76797 0.80406 1.19175 1.21970 1.22188 1.21672 0.89563 0.96216 0.90955 1.21656 0.96656 1.03286 0.92837 1.21724 0.96585 0.84841 0.97348 0.89520 0.88085 0.91931 0.80717 0.71273 0.80587 0.88859 0.89557 0.92214 0.91788 0.90037 0.91137 0.97061 0.98373 0.94590 0.96060 0.94617 0.89418 0.91384 0.89872 0.88982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.77 9.10 71.24 0.65 -1.12 16 2 C 0.02 0.28 5.94 -19.43 -0.12 0.17 16 3 C -0.18 -2.85 9.71 22.43 0.22 -2.63 16 4 C 0.33 6.12 7.74 84.82 0.66 6.78 16 5 O -0.49 -7.43 13.55 -88.07 -1.19 -8.62 16 6 N -0.53 -11.92 10.37 -307.80 -3.19 -15.12 16 7 C 0.16 3.31 8.60 85.04 0.73 4.04 16 8 C -0.21 -4.43 4.89 -19.99 -0.10 -4.53 16 9 C 0.57 13.82 6.26 86.72 0.54 14.36 16 10 O -0.56 -16.55 15.68 -3.96 -0.06 -16.61 16 11 N -0.59 -13.12 2.97 -822.88 -2.44 -15.56 16 12 C 0.11 2.37 5.21 86.25 0.45 2.82 16 13 C -0.10 -2.87 4.84 30.26 0.15 -2.73 16 14 C -0.06 -1.68 0.55 -51.92 -0.03 -1.71 16 15 C -0.12 -3.94 4.92 31.56 0.16 -3.78 16 16 C 0.19 8.88 5.00 86.77 0.43 9.32 16 17 N -0.62 -30.82 3.39 -692.75 -2.35 -33.17 16 18 C -0.24 -13.08 10.28 84.03 0.86 -12.22 16 19 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 20 C -0.06 -3.62 5.49 84.86 0.47 -3.15 16 21 N -0.95 -56.28 10.31 21.65 0.22 -56.05 16 22 Si 0.97 45.39 29.55 68.60 2.03 47.42 16 23 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 24 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 25 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 26 C 0.14 5.39 6.15 86.55 0.53 5.92 16 27 C -0.11 -2.42 4.84 30.41 0.15 -2.27 16 28 C 0.12 2.47 6.16 86.41 0.53 3.01 16 29 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.10 0.98 8.07 -2.39 -0.02 0.96 16 31 H 0.06 1.15 7.29 -2.39 -0.02 1.13 16 32 H 0.18 1.63 8.06 -2.91 -0.02 1.61 16 33 H 0.42 2.20 9.06 -74.06 -0.67 1.53 16 34 H 0.18 3.10 7.36 -2.91 -0.02 3.08 16 35 H 0.09 1.88 4.70 -2.38 -0.01 1.87 16 36 H 0.09 1.81 6.56 -2.38 -0.02 1.80 16 37 H 0.06 2.05 7.82 -2.38 -0.02 2.03 16 38 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.08 2.32 6.19 -2.38 -0.01 2.30 16 40 H 0.07 2.14 7.98 -2.38 -0.02 2.12 16 41 H 0.01 0.59 7.39 -2.38 -0.02 0.57 16 42 H 0.00 -0.11 7.50 -2.39 -0.02 -0.13 16 43 H 0.24 14.18 8.31 -92.70 -0.77 13.41 16 44 H 0.02 0.82 7.99 -2.39 -0.02 0.80 16 45 H 0.04 1.36 8.02 -2.39 -0.02 1.34 16 46 H 0.09 1.88 8.10 -2.38 -0.02 1.86 16 47 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 48 H 0.08 1.63 7.62 -2.39 -0.02 1.61 16 49 H 0.09 2.01 7.01 -2.39 -0.02 1.99 16 Total: -1.00 -73.57 380.06 -0.39 -73.96 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: 0.31 Total: 11.48 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: 6.28 Total: 12.28 kcal Atomic # 7 Polarization: -112.15 SS G_CDS: -7.76 Total: -119.90 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: -1.26 Total: -25.23 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -73.57 -0.39 -73.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035223415.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.067 kcal (2) G-P(sol) polarization free energy of solvation -73.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds