Wall clock time and date at job start Wed Apr 1 2020 05:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35924 * 117.00373 * 2 1 4 4 C 1.38851 * 120.40247 * 0.02562 * 3 2 1 5 5 N 1.31882 * 121.00000 * 179.71287 * 4 3 2 6 6 C 1.31681 * 121.93833 * 0.28660 * 5 4 3 7 7 C 1.39518 * 120.69446 * 0.02562 * 6 5 4 8 8 C 1.47856 * 120.53342 * 179.97438 * 7 6 5 9 9 O 1.21547 * 120.00313 * 125.59301 * 8 7 6 10 10 N 1.34781 * 119.99743 * 305.59383 * 8 7 6 11 11 C 1.46884 * 120.46507 * 3.73829 * 10 8 7 12 12 C 1.52854 * 109.01558 * 235.48505 * 11 10 8 13 13 C 1.52663 * 109.17732 * 307.82016 * 12 11 10 14 14 C 1.53490 * 113.62242 * 188.99725 * 13 12 11 15 15 N 1.47677 * 85.98745 * 137.70437 * 14 13 12 16 16 C 1.36936 * 134.45762 * 155.71675 * 15 14 13 17 17 H 1.07994 * 119.99910 * 179.97438 * 16 15 14 18 18 C 1.38815 * 119.99940 * 359.94718 * 16 15 14 19 19 N 1.31624 * 119.99921 * 0.02562 * 18 16 15 20 20 Si 1.86792 * 120.00116 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47274 * 89.99940 * 20 18 16 22 22 H 1.48498 * 109.47477 * 209.99851 * 20 18 16 23 23 H 1.48501 * 109.47229 * 330.00293 * 20 18 16 24 24 C 1.47666 * 91.08617 * 335.67945 * 15 14 13 25 25 C 1.52673 * 113.18865 * 57.45912 * 13 12 11 26 26 C 1.46881 * 120.46512 * 184.01058 * 10 8 7 27 27 C 1.38842 * 120.41016 * 180.29181 * 3 2 1 28 28 C 1.50701 * 120.88091 * 0.02562 * 27 3 2 29 29 H 1.08996 * 109.46972 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47043 * 299.99730 * 1 2 3 31 31 H 1.09002 * 109.46957 * 59.99973 * 1 2 3 32 32 H 1.08006 * 119.49739 * 0.02562 * 4 3 2 33 33 H 1.08003 * 119.64925 * 179.97438 * 6 5 4 34 34 H 1.09000 * 109.58701 * 355.31435 * 11 10 8 35 35 H 1.09003 * 109.58855 * 115.74579 * 11 10 8 36 36 H 1.08998 * 109.60639 * 187.83783 * 12 11 10 37 37 H 1.09004 * 109.45089 * 67.69980 * 12 11 10 38 38 H 1.08999 * 113.78908 * 251.96785 * 14 13 12 39 39 H 1.08999 * 113.78991 * 23.43936 * 14 13 12 40 40 H 0.97000 * 119.99994 * 179.97438 * 19 18 16 41 41 H 1.09001 * 113.79413 * 270.05176 * 24 15 14 42 42 H 1.09001 * 113.78944 * 138.57596 * 24 15 14 43 43 H 1.09004 * 109.53060 * 182.51938 * 25 13 12 44 44 H 1.09000 * 109.58841 * 62.33928 * 25 13 12 45 45 H 1.09001 * 109.58910 * 244.25787 * 26 10 8 46 46 H 1.09000 * 109.58877 * 4.69350 * 26 10 8 47 47 H 1.09004 * 109.46892 * 265.05893 * 28 27 3 48 48 H 1.09000 * 109.46845 * 25.05217 * 28 27 3 49 49 H 1.08993 * 109.47272 * 145.05690 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2982 2.3809 0.0005 5 7 1.8847 3.5621 0.0062 6 6 3.1954 3.6891 0.0060 7 6 4.0199 2.5636 -0.0009 8 6 5.4912 2.7103 -0.0016 9 8 6.1576 2.1565 0.8507 10 7 6.0933 3.4582 -0.9475 11 6 5.2936 4.1980 -1.9328 12 6 5.7350 3.7916 -3.3386 13 6 7.2499 3.9429 -3.4519 14 6 7.7798 3.7726 -4.8824 15 7 8.6509 4.9277 -4.5864 16 6 9.8466 5.3783 -5.0788 17 1 10.2895 6.2791 -4.6807 18 6 10.4896 4.6767 -6.0894 19 7 9.9498 3.5787 -6.5746 20 14 12.1210 5.2909 -6.7606 21 1 13.2340 4.6948 -5.9787 22 1 12.2503 4.8952 -8.1861 23 1 12.1759 6.7708 -6.6507 24 6 7.7154 5.4027 -3.5473 25 6 8.0151 3.1247 -2.4147 26 6 7.5584 3.5402 -1.0112 27 6 3.4321 1.2936 -0.0061 28 6 4.2810 0.0484 -0.0134 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 0.2197 2.3225 0.0014 33 1 3.6367 4.6748 0.0103 34 1 4.2383 3.9600 -1.7997 35 1 5.4486 5.2687 -1.7994 36 1 5.2487 4.4323 -4.0742 37 1 5.4580 2.7531 -3.5201 38 1 8.3234 2.8414 -5.0419 39 1 7.0350 3.9697 -5.6535 40 1 10.3990 3.0887 -7.2811 41 1 6.9515 6.0842 -3.9217 42 1 8.2078 5.7670 -2.6457 43 1 9.0839 3.3106 -2.5201 44 1 7.8132 2.0641 -2.5645 45 1 7.8762 4.5636 -0.8115 46 1 7.9945 2.8689 -0.2713 47 1 4.5635 -0.2047 1.0085 48 1 3.7145 -0.7750 -0.4483 49 1 5.1790 0.2244 -0.6056 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035731383.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:26 Heat of formation + Delta-G solvation = 26.839292 kcal Electronic energy + Delta-G solvation = -31036.861253 eV Core-core repulsion = 26966.489791 eV Total energy + Delta-G solvation = -4070.371462 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.40809 -40.16726 -38.87950 -38.11021 -35.84754 -34.07465 -32.58110 -31.73370 -30.74493 -30.08533 -28.18990 -27.97577 -26.87085 -25.12126 -24.52716 -23.53422 -22.97867 -22.40386 -21.26837 -19.87767 -18.52926 -17.79310 -17.39485 -16.74623 -16.69567 -16.40233 -16.19217 -15.92204 -15.15558 -14.86654 -14.67462 -14.53538 -14.08030 -13.96964 -13.77993 -13.64379 -13.39345 -13.09883 -13.09201 -12.81598 -12.47240 -12.40004 -12.32008 -12.11333 -12.01968 -11.84951 -11.71167 -11.11073 -11.04780 -10.86937 -10.84585 -10.45324 -10.33374 -10.17444 -9.72859 -9.71730 -9.65505 -9.46860 -9.34631 -8.78182 -8.76410 -8.49697 -6.85138 -5.75387 -3.07087 0.46194 0.88875 2.42507 2.74504 3.02516 3.39325 3.39783 3.44405 3.46125 4.03336 4.16553 4.30143 4.42040 4.46551 4.55605 4.69795 4.80283 4.90841 4.95612 5.02627 5.08354 5.20948 5.24241 5.29162 5.32008 5.44263 5.49435 5.50466 5.52815 5.67779 5.84065 5.84289 5.88001 5.89645 5.94244 6.09398 6.16943 6.26039 6.30526 6.41101 6.59750 6.63560 6.76228 6.79962 6.84963 7.24349 7.35230 7.38177 7.52196 7.59427 8.00187 8.04808 9.06471 9.72677 10.62754 11.41563 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.022293 B = 0.002417 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.687001 B =11579.539345 C =11648.136105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.306 6.306 3 C 0.072 3.928 4 C 0.033 3.967 5 N -0.453 5.453 6 C 0.097 3.903 7 C -0.138 4.138 8 C 0.565 3.435 9 O -0.532 6.532 10 N -0.593 5.593 11 C 0.101 3.899 12 C -0.118 4.118 13 C -0.109 4.109 14 C 0.174 3.826 15 N -0.609 5.609 16 C -0.221 4.221 17 H 0.078 0.922 18 C -0.008 4.008 19 N -0.921 5.921 20 Si 0.910 3.090 21 H -0.288 1.288 22 H -0.291 1.291 23 H -0.282 1.282 24 C 0.126 3.874 25 C -0.096 4.096 26 C 0.114 3.886 27 C -0.025 4.025 28 C -0.109 4.109 29 H 0.104 0.896 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.162 0.838 33 H 0.165 0.835 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.063 0.937 38 H 0.072 0.928 39 H 0.024 0.976 40 H 0.253 0.747 41 H 0.031 0.969 42 H 0.041 0.959 43 H 0.089 0.911 44 H 0.060 0.940 45 H 0.071 0.929 46 H 0.090 0.910 47 H 0.084 0.916 48 H 0.076 0.924 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.989 -5.305 13.724 24.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.218 6.218 3 C 0.024 3.976 4 C -0.124 4.124 5 N -0.162 5.162 6 C -0.062 4.062 7 C -0.143 4.143 8 C 0.351 3.649 9 O -0.409 6.409 10 N -0.326 5.326 11 C -0.022 4.022 12 C -0.157 4.157 13 C -0.110 4.110 14 C 0.048 3.952 15 N -0.335 5.335 16 C -0.348 4.348 17 H 0.096 0.904 18 C -0.205 4.205 19 N -0.569 5.569 20 Si 0.740 3.260 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.208 1.208 24 C 0.000 4.000 25 C -0.134 4.134 26 C -0.008 4.008 27 C -0.034 4.034 28 C -0.166 4.166 29 H 0.123 0.877 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.179 0.821 33 H 0.182 0.818 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.042 0.958 40 H 0.063 0.937 41 H 0.049 0.951 42 H 0.059 0.941 43 H 0.107 0.893 44 H 0.079 0.921 45 H 0.090 0.910 46 H 0.108 0.892 47 H 0.103 0.897 48 H 0.095 0.905 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -19.762 -5.061 13.954 24.716 hybrid contribution 0.962 -0.093 -0.732 1.212 sum -18.800 -5.154 13.222 23.555 Atomic orbital electron populations 1.23155 0.77845 1.04561 1.01629 1.86096 1.21634 1.25532 1.88534 1.19697 0.92183 0.86082 0.99614 1.23033 1.00670 0.87058 1.01647 1.67549 1.11708 1.25947 1.10977 1.22853 0.88486 0.98164 0.96677 1.20749 0.95117 0.93912 1.04535 1.17957 0.86327 0.78854 0.81721 1.90789 1.65216 1.47712 1.37232 1.48065 1.07846 1.46888 1.29760 1.21943 0.95066 0.96358 0.88827 1.21738 0.96979 1.01846 0.95133 1.22396 0.92180 0.97465 0.98987 1.22228 0.90335 0.93402 0.89210 1.45961 1.18536 1.27342 1.41657 1.19003 0.93916 1.07051 1.14878 0.90414 1.24761 0.98997 0.97761 0.98964 1.69817 1.39144 1.17742 1.30149 0.86159 0.83630 0.78023 0.78177 1.21572 1.21722 1.20771 1.22595 0.91845 0.93059 0.92470 1.21493 1.01292 0.98954 0.91675 1.21775 0.77771 1.02341 0.98900 1.19682 0.90915 0.95462 0.97370 1.20704 0.98654 0.93476 1.03716 0.87731 0.92336 0.92249 0.82135 0.81776 0.90019 0.90629 0.90542 0.91868 0.91002 0.95779 0.93722 0.95125 0.94108 0.89270 0.92104 0.91031 0.89171 0.89749 0.90500 0.90755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.82 101.05 0.99 1.10 16 2 O -0.31 -2.70 9.59 -19.50 -0.19 -2.89 16 3 C 0.07 0.73 6.68 -39.13 -0.26 0.47 16 4 C 0.03 0.31 10.21 -17.30 -0.18 0.14 16 5 N -0.45 -4.97 10.34 -12.80 -0.13 -5.11 16 6 C 0.10 1.06 8.59 -17.14 -0.15 0.91 16 7 C -0.14 -1.69 4.89 -104.84 -0.51 -2.20 16 8 C 0.57 7.91 6.25 -12.32 -0.08 7.83 16 9 O -0.53 -8.93 15.70 5.32 0.08 -8.85 16 10 N -0.59 -7.85 2.95 -174.07 -0.51 -8.36 16 11 C 0.10 1.17 5.44 -3.91 -0.02 1.15 16 12 C -0.12 -1.63 5.24 -26.98 -0.14 -1.77 16 13 C -0.11 -1.88 0.77 -154.42 -0.12 -2.00 16 14 C 0.17 3.93 6.64 -3.15 -0.02 3.91 16 15 N -0.61 -15.07 3.53 -179.72 -0.64 -15.71 16 16 C -0.22 -6.09 10.70 -15.06 -0.16 -6.25 16 17 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 18 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 19 N -0.92 -27.07 11.39 55.49 0.63 -26.44 16 20 Si 0.91 22.07 29.55 -169.99 -5.02 17.05 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 C 0.13 2.43 7.72 -3.14 -0.02 2.40 16 25 C -0.10 -1.59 5.22 -26.73 -0.14 -1.73 16 26 C 0.11 1.62 6.29 -3.66 -0.02 1.60 16 27 C -0.03 -0.30 5.96 -103.76 -0.62 -0.92 16 28 C -0.11 -1.22 8.96 36.01 0.32 -0.90 16 29 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.21 7.67 -51.93 -0.40 -0.19 16 31 H 0.06 0.22 7.68 -51.93 -0.40 -0.18 16 32 H 0.16 1.02 6.30 -52.48 -0.33 0.69 16 33 H 0.17 1.51 7.39 -52.48 -0.39 1.12 16 34 H 0.08 0.86 4.65 -51.93 -0.24 0.61 16 35 H 0.08 0.81 8.07 -51.93 -0.42 0.39 16 36 H 0.08 1.02 8.12 -51.93 -0.42 0.60 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.07 1.83 7.12 -51.93 -0.37 1.46 16 39 H 0.02 0.57 8.09 -51.93 -0.42 0.15 16 40 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 41 H 0.03 0.57 8.07 -51.93 -0.42 0.15 16 42 H 0.04 0.75 7.41 -51.93 -0.38 0.37 16 43 H 0.09 1.70 8.01 -51.93 -0.42 1.28 16 44 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.07 0.98 7.49 -51.93 -0.39 0.59 16 46 H 0.09 1.33 6.99 -51.93 -0.36 0.96 16 47 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 48 H 0.08 0.76 7.48 -51.93 -0.39 0.37 16 49 H 0.07 0.91 7.29 -51.93 -0.38 0.53 16 LS Contribution 385.81 15.07 5.81 5.81 Total: -1.00 -33.20 385.81 -8.55 -41.75 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -7.36 Total: -0.68 kcal Atomic # 6 Polarization: 4.64 SS G_CDS: -1.23 Total: 3.42 kcal Atomic # 7 Polarization: -54.96 SS G_CDS: -0.65 Total: -55.61 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: -0.10 Total: -11.74 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.20 -8.55 -41.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035731383.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.592 kcal (2) G-P(sol) polarization free energy of solvation -33.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds