Wall clock time and date at job start Wed Apr 1 2020 05:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35924 * 117.00373 * 2 1 4 4 C 1.38851 * 120.40247 * 0.02562 * 3 2 1 5 5 N 1.31882 * 121.00000 * 179.71287 * 4 3 2 6 6 C 1.31681 * 121.93833 * 0.28660 * 5 4 3 7 7 C 1.39518 * 120.69446 * 0.02562 * 6 5 4 8 8 C 1.47856 * 120.53342 * 179.97438 * 7 6 5 9 9 O 1.21547 * 120.00313 * 125.59301 * 8 7 6 10 10 N 1.34781 * 119.99743 * 305.59383 * 8 7 6 11 11 C 1.46884 * 120.46507 * 3.73829 * 10 8 7 12 12 C 1.52854 * 109.01558 * 235.48505 * 11 10 8 13 13 C 1.52663 * 109.17732 * 307.82016 * 12 11 10 14 14 C 1.53490 * 113.62242 * 188.99725 * 13 12 11 15 15 N 1.47677 * 85.98745 * 137.70437 * 14 13 12 16 16 C 1.36936 * 134.45762 * 155.71675 * 15 14 13 17 17 H 1.07994 * 119.99910 * 179.97438 * 16 15 14 18 18 C 1.38815 * 119.99940 * 359.94718 * 16 15 14 19 19 N 1.31624 * 119.99921 * 0.02562 * 18 16 15 20 20 Si 1.86792 * 120.00116 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47274 * 89.99940 * 20 18 16 22 22 H 1.48498 * 109.47477 * 209.99851 * 20 18 16 23 23 H 1.48501 * 109.47229 * 330.00293 * 20 18 16 24 24 C 1.47666 * 91.08617 * 335.67945 * 15 14 13 25 25 C 1.52673 * 113.18865 * 57.45912 * 13 12 11 26 26 C 1.46881 * 120.46512 * 184.01058 * 10 8 7 27 27 C 1.38842 * 120.41016 * 180.29181 * 3 2 1 28 28 C 1.50701 * 120.88091 * 0.02562 * 27 3 2 29 29 H 1.08996 * 109.46972 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47043 * 299.99730 * 1 2 3 31 31 H 1.09002 * 109.46957 * 59.99973 * 1 2 3 32 32 H 1.08006 * 119.49739 * 0.02562 * 4 3 2 33 33 H 1.08003 * 119.64925 * 179.97438 * 6 5 4 34 34 H 1.09000 * 109.58701 * 355.31435 * 11 10 8 35 35 H 1.09003 * 109.58855 * 115.74579 * 11 10 8 36 36 H 1.08998 * 109.60639 * 187.83783 * 12 11 10 37 37 H 1.09004 * 109.45089 * 67.69980 * 12 11 10 38 38 H 1.08999 * 113.78908 * 251.96785 * 14 13 12 39 39 H 1.08999 * 113.78991 * 23.43936 * 14 13 12 40 40 H 0.97000 * 119.99994 * 179.97438 * 19 18 16 41 41 H 1.09001 * 113.79413 * 270.05176 * 24 15 14 42 42 H 1.09001 * 113.78944 * 138.57596 * 24 15 14 43 43 H 1.09004 * 109.53060 * 182.51938 * 25 13 12 44 44 H 1.09000 * 109.58841 * 62.33928 * 25 13 12 45 45 H 1.09001 * 109.58910 * 244.25787 * 26 10 8 46 46 H 1.09000 * 109.58877 * 4.69350 * 26 10 8 47 47 H 1.09004 * 109.46892 * 265.05893 * 28 27 3 48 48 H 1.09000 * 109.46845 * 25.05217 * 28 27 3 49 49 H 1.08993 * 109.47272 * 145.05690 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2982 2.3809 0.0005 5 7 1.8847 3.5621 0.0062 6 6 3.1954 3.6891 0.0060 7 6 4.0199 2.5636 -0.0009 8 6 5.4912 2.7103 -0.0016 9 8 6.1576 2.1565 0.8507 10 7 6.0933 3.4582 -0.9475 11 6 5.2936 4.1980 -1.9328 12 6 5.7350 3.7916 -3.3386 13 6 7.2499 3.9429 -3.4519 14 6 7.7798 3.7726 -4.8824 15 7 8.6509 4.9277 -4.5864 16 6 9.8466 5.3783 -5.0788 17 1 10.2895 6.2791 -4.6807 18 6 10.4896 4.6767 -6.0894 19 7 9.9498 3.5787 -6.5746 20 14 12.1210 5.2909 -6.7606 21 1 13.2340 4.6948 -5.9787 22 1 12.2503 4.8952 -8.1861 23 1 12.1759 6.7708 -6.6507 24 6 7.7154 5.4027 -3.5473 25 6 8.0151 3.1247 -2.4147 26 6 7.5584 3.5402 -1.0112 27 6 3.4321 1.2936 -0.0061 28 6 4.2810 0.0484 -0.0134 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 0.2197 2.3225 0.0014 33 1 3.6367 4.6748 0.0103 34 1 4.2383 3.9600 -1.7997 35 1 5.4486 5.2687 -1.7994 36 1 5.2487 4.4323 -4.0742 37 1 5.4580 2.7531 -3.5201 38 1 8.3234 2.8414 -5.0419 39 1 7.0350 3.9697 -5.6535 40 1 10.3990 3.0887 -7.2811 41 1 6.9515 6.0842 -3.9217 42 1 8.2078 5.7670 -2.6457 43 1 9.0839 3.3106 -2.5201 44 1 7.8132 2.0641 -2.5645 45 1 7.8762 4.5636 -0.8115 46 1 7.9945 2.8689 -0.2713 47 1 4.5635 -0.2047 1.0085 48 1 3.7145 -0.7750 -0.4483 49 1 5.1790 0.2244 -0.6056 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035731383.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:25 Heat of formation + Delta-G solvation = 5.666665 kcal Electronic energy + Delta-G solvation = -31037.779367 eV Core-core repulsion = 26966.489791 eV Total energy + Delta-G solvation = -4071.289576 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -42.28636 -41.28486 -40.12048 -38.91511 -37.17086 -34.91099 -34.43352 -32.85214 -32.10824 -31.21531 -29.05367 -28.66426 -28.38505 -26.75016 -25.71815 -24.75919 -24.08415 -23.31949 -22.81635 -20.99132 -19.51192 -18.69222 -18.57013 -18.54386 -17.56166 -17.27727 -16.99111 -16.89469 -16.80572 -16.17982 -16.08634 -15.62170 -15.24058 -15.06854 -15.02391 -14.81713 -14.42609 -14.08797 -14.01997 -13.98962 -13.82025 -13.60157 -13.54946 -13.13040 -12.93756 -12.91321 -12.80961 -12.73548 -12.63436 -12.35049 -12.19110 -12.14344 -11.64589 -11.56595 -11.47987 -11.12633 -10.97996 -10.80189 -10.58582 -10.41130 -9.67714 -9.47579 -8.85606 -7.87489 -5.19218 -0.35746 0.09544 1.43360 1.45108 1.46565 1.54799 1.84716 2.25842 2.49022 2.58620 3.23615 3.33330 3.42734 3.43521 3.49609 3.59840 3.62918 3.88353 3.93727 4.02500 4.15620 4.17569 4.30221 4.38462 4.40552 4.43326 4.47372 4.58860 4.61706 4.63072 4.68838 4.76355 4.79105 4.80227 4.89297 4.93892 5.02524 5.04292 5.05749 5.15633 5.20000 5.30546 5.32093 5.34456 5.48439 5.61221 5.76011 5.98676 6.15994 6.28982 6.74511 6.95877 6.97599 7.65216 8.62233 9.29303 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.022293 B = 0.002417 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.687001 B =11579.539345 C =11648.136105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.320 6.320 3 C 0.075 3.925 4 C 0.040 3.960 5 N -0.462 5.462 6 C 0.097 3.903 7 C -0.151 4.151 8 C 0.568 3.432 9 O -0.566 6.566 10 N -0.592 5.592 11 C 0.106 3.894 12 C -0.112 4.112 13 C -0.081 4.081 14 C 0.168 3.832 15 N -0.639 5.639 16 C -0.227 4.227 17 H 0.082 0.918 18 C -0.070 4.070 19 N -0.954 5.954 20 Si 0.974 3.026 21 H -0.287 1.287 22 H -0.297 1.297 23 H -0.269 1.269 24 C 0.130 3.870 25 C -0.089 4.089 26 C 0.125 3.875 27 C -0.045 4.045 28 C -0.103 4.103 29 H 0.122 0.878 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.193 0.807 33 H 0.182 0.818 34 H 0.101 0.899 35 H 0.097 0.903 36 H 0.089 0.911 37 H 0.062 0.938 38 H 0.033 0.967 39 H 0.015 0.985 40 H 0.246 0.754 41 H 0.051 0.949 42 H 0.054 0.946 43 H 0.059 0.941 44 H 0.054 0.946 45 H 0.084 0.916 46 H 0.084 0.916 47 H 0.078 0.922 48 H 0.086 0.914 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.604 -4.058 14.907 27.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.232 6.232 3 C 0.027 3.973 4 C -0.117 4.117 5 N -0.171 5.171 6 C -0.061 4.061 7 C -0.156 4.156 8 C 0.356 3.644 9 O -0.446 6.446 10 N -0.323 5.323 11 C -0.016 4.016 12 C -0.150 4.150 13 C -0.083 4.083 14 C 0.042 3.958 15 N -0.365 5.365 16 C -0.355 4.355 17 H 0.100 0.900 18 C -0.263 4.263 19 N -0.604 5.604 20 Si 0.803 3.197 21 H -0.215 1.215 22 H -0.224 1.224 23 H -0.194 1.194 24 C 0.006 3.994 25 C -0.127 4.127 26 C 0.003 3.997 27 C -0.054 4.054 28 C -0.160 4.160 29 H 0.140 0.860 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.210 0.790 33 H 0.199 0.801 34 H 0.119 0.881 35 H 0.115 0.885 36 H 0.107 0.893 37 H 0.080 0.920 38 H 0.051 0.949 39 H 0.033 0.967 40 H 0.055 0.945 41 H 0.068 0.932 42 H 0.072 0.928 43 H 0.077 0.923 44 H 0.073 0.927 45 H 0.102 0.898 46 H 0.102 0.898 47 H 0.097 0.903 48 H 0.105 0.895 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -22.413 -3.783 15.158 27.321 hybrid contribution 1.653 -0.549 -1.071 2.045 sum -20.761 -4.331 14.087 25.460 Atomic orbital electron populations 1.23506 0.75542 1.06292 1.02914 1.86092 1.23999 1.24938 1.88194 1.19704 0.91660 0.87002 0.98963 1.23539 1.02095 0.86264 0.99809 1.67638 1.11559 1.26590 1.11357 1.23068 0.88488 0.98344 0.96202 1.20609 0.93857 0.94745 1.06404 1.18228 0.87109 0.77939 0.81117 1.90768 1.66218 1.48958 1.38650 1.48079 1.07345 1.46899 1.29984 1.22053 0.95752 0.97213 0.86565 1.21689 0.93771 1.02363 0.97226 1.22094 0.94755 0.96134 0.95283 1.22166 0.89816 0.91319 0.92451 1.46335 1.18858 1.28567 1.42777 1.19398 0.95163 1.06702 1.14267 0.90008 1.25567 1.02458 0.98286 0.99963 1.70015 1.40540 1.19086 1.30764 0.85143 0.79702 0.78056 0.76846 1.21454 1.22360 1.19381 1.22785 0.91023 0.94286 0.91332 1.21360 0.99504 0.98594 0.93291 1.21564 0.78729 1.02766 0.96670 1.19827 0.92021 0.95298 0.98276 1.20616 0.98157 0.94097 1.03100 0.85992 0.90947 0.90945 0.78997 0.80110 0.88080 0.88490 0.89262 0.91962 0.94879 0.96743 0.94530 0.93159 0.92807 0.92256 0.92742 0.89760 0.89784 0.90345 0.89480 0.92421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.82 113.37 1.11 1.18 16 2 O -0.32 -4.92 9.59 -92.69 -0.89 -5.81 16 3 C 0.07 1.36 6.68 22.56 0.15 1.51 16 4 C 0.04 0.63 10.21 84.83 0.87 1.50 16 5 N -0.46 -8.71 10.34 -194.39 -2.01 -10.72 16 6 C 0.10 1.86 8.59 85.02 0.73 2.59 16 7 C -0.15 -3.46 4.89 -20.01 -0.10 -3.56 16 8 C 0.57 15.37 6.25 86.79 0.54 15.91 16 9 O -0.57 -19.03 15.70 -3.86 -0.06 -19.09 16 10 N -0.59 -14.69 2.95 -822.90 -2.43 -17.12 16 11 C 0.11 2.15 5.44 86.26 0.47 2.62 16 12 C -0.11 -2.85 5.24 30.43 0.16 -2.69 16 13 C -0.08 -2.77 0.77 -52.03 -0.04 -2.81 16 14 C 0.17 7.83 6.64 86.31 0.57 8.40 16 15 N -0.64 -31.96 3.53 -722.50 -2.55 -34.52 16 16 C -0.23 -12.64 10.70 84.03 0.90 -11.74 16 17 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 18 C -0.07 -4.02 5.50 84.86 0.47 -3.56 16 19 N -0.95 -58.21 11.39 21.65 0.25 -57.96 16 20 Si 0.97 46.22 29.55 68.60 2.03 48.24 16 21 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 22 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 23 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 24 C 0.13 4.81 7.72 86.33 0.67 5.48 16 25 C -0.09 -2.99 5.22 30.60 0.16 -2.83 16 26 C 0.12 3.46 6.29 86.42 0.54 4.00 16 27 C -0.05 -1.02 5.96 -19.30 -0.12 -1.13 16 28 C -0.10 -2.32 8.96 71.24 0.64 -1.68 16 29 H 0.12 0.31 8.14 -2.39 -0.02 0.29 16 30 H 0.07 0.25 7.67 -2.39 -0.02 0.23 16 31 H 0.07 0.27 7.68 -2.39 -0.02 0.25 16 32 H 0.19 1.63 6.30 -2.91 -0.02 1.61 16 33 H 0.18 2.71 7.39 -2.91 -0.02 2.69 16 34 H 0.10 1.76 4.65 -2.39 -0.01 1.75 16 35 H 0.10 1.64 8.07 -2.39 -0.02 1.63 16 36 H 0.09 2.12 8.12 -2.39 -0.02 2.10 16 37 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 38 H 0.03 1.78 7.12 -2.39 -0.02 1.76 16 39 H 0.01 0.71 8.09 -2.39 -0.02 0.69 16 40 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 41 H 0.05 1.72 8.07 -2.39 -0.02 1.70 16 42 H 0.05 1.86 7.41 -2.39 -0.02 1.84 16 43 H 0.06 2.35 8.01 -2.38 -0.02 2.33 16 44 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 45 H 0.08 2.15 7.49 -2.39 -0.02 2.13 16 46 H 0.08 2.48 6.99 -2.39 -0.02 2.46 16 47 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 48 H 0.09 1.70 7.48 -2.39 -0.02 1.68 16 49 H 0.06 1.45 7.29 -2.39 -0.02 1.44 16 Total: -1.00 -74.37 385.81 3.02 -71.35 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: 0.96 Total: 12.43 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: 7.73 Total: 13.20 kcal Atomic # 7 Polarization: -113.57 SS G_CDS: -6.74 Total: -120.31 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -0.95 Total: -24.91 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.24 kcal Total: -74.37 3.02 -71.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035731383.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.013 kcal (2) G-P(sol) polarization free energy of solvation -74.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds