Wall clock time and date at job start Wed Apr 1 2020 03:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38001 * 120.82286 * 2 1 4 4 C 1.39120 * 119.26745 * 179.97438 * 3 2 1 5 5 O 1.35492 * 119.52869 * 180.02562 * 4 3 2 6 6 N 1.32439 * 120.94695 * 359.97261 * 4 3 2 7 7 C 1.31639 * 121.80206 * 359.74838 * 6 4 3 8 8 C 1.50700 * 119.68764 * 180.28793 * 7 6 4 9 9 C 1.39565 * 120.62021 * 0.54360 * 7 6 4 10 10 C 1.47622 * 120.49428 * 179.71893 * 9 7 6 11 11 O 1.21580 * 120.00057 * 269.72278 * 10 9 7 12 12 N 1.34775 * 119.99553 * 89.72493 * 10 9 7 13 13 C 1.46900 * 120.46117 * 180.02562 * 12 10 9 14 14 C 1.53349 * 108.74479 * 124.34262 * 13 12 10 15 15 C 1.52559 * 109.12733 * 52.25717 * 14 13 12 16 16 C 1.52963 * 114.05870 * 75.53963 * 15 14 13 17 17 N 1.47166 * 87.85376 * 139.44344 * 16 15 14 18 18 C 1.36936 * 136.00143 * 153.08248 * 17 16 15 19 19 H 1.07994 * 119.99869 * 359.97438 * 18 17 16 20 20 C 1.38812 * 119.99903 * 180.02562 * 18 17 16 21 21 N 1.31624 * 119.99863 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00052 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46936 * 89.99757 * 22 20 18 24 24 H 1.48502 * 109.47124 * 209.99971 * 22 20 18 25 25 H 1.48498 * 109.46664 * 329.99449 * 22 20 18 26 26 C 1.47170 * 87.99578 * 333.33681 * 17 16 15 27 27 C 1.52550 * 113.43531 * 302.67267 * 15 14 13 28 28 C 1.46887 * 120.46522 * 359.97438 * 12 10 9 29 29 H 1.08999 * 109.47087 * 270.02514 * 1 2 3 30 30 H 1.09001 * 109.47065 * 30.02436 * 1 2 3 31 31 H 1.08997 * 109.47609 * 150.02005 * 1 2 3 32 32 H 1.08003 * 120.36419 * 359.97438 * 3 2 1 33 33 H 0.96701 * 114.00358 * 89.99160 * 5 4 3 34 34 H 1.09001 * 109.47265 * 270.25034 * 8 7 6 35 35 H 1.08996 * 109.46968 * 30.25177 * 8 7 6 36 36 H 1.08998 * 109.47077 * 150.25547 * 8 7 6 37 37 H 1.08997 * 109.59040 * 4.56101 * 13 12 10 38 38 H 1.08995 * 109.58733 * 244.12120 * 13 12 10 39 39 H 1.09007 * 109.53130 * 292.36885 * 14 13 12 40 40 H 1.08996 * 109.58779 * 172.18987 * 14 13 12 41 41 H 1.09004 * 113.49269 * 24.69819 * 16 15 14 42 42 H 1.09006 * 113.49256 * 254.18848 * 16 15 14 43 43 H 0.97004 * 119.99747 * 180.02562 * 21 20 18 44 44 H 1.08999 * 113.48969 * 141.41363 * 26 17 16 45 45 H 1.08999 * 113.48708 * 271.91864 * 26 17 16 46 46 H 1.08997 * 109.53381 * 177.20989 * 27 15 14 47 47 H 1.09004 * 109.52572 * 297.42090 * 27 15 14 48 48 H 1.08998 * 109.59052 * 355.42705 * 28 12 10 49 49 H 1.09005 * 109.58621 * 115.86966 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2140 1.1851 0.0000 4 6 3.6047 1.1473 0.0005 5 8 4.3043 2.3077 0.0011 6 7 4.2547 -0.0066 0.0016 7 6 3.6204 -1.1601 0.0071 8 6 4.4080 -2.4449 0.0146 9 6 2.2255 -1.2043 0.0006 10 6 1.5170 -2.4994 0.0006 11 8 1.2258 -3.0330 -1.0523 12 7 1.1931 -3.0903 1.1678 13 6 0.4887 -4.3793 1.1797 14 6 1.3071 -5.3806 2.0038 15 6 1.6193 -4.7696 3.3664 16 6 0.4317 -4.7553 4.3302 17 7 1.3677 -5.1316 5.4017 18 6 1.4279 -4.9673 6.7598 19 1 0.6379 -4.4418 7.2757 20 6 2.5047 -5.4754 7.4734 21 7 3.4677 -6.1155 6.8445 22 14 2.5871 -5.2508 9.3260 23 1 1.9221 -6.3983 9.9938 24 1 4.0076 -5.1843 9.7539 25 1 1.8973 -3.9909 9.7029 26 6 2.2140 -5.7562 4.3723 27 6 2.3659 -3.4421 3.2793 28 6 1.5405 -2.4549 2.4458 29 1 -0.3633 0.0005 1.0277 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3634 -0.8901 -0.5135 32 1 1.6935 2.1314 -0.0004 33 1 4.5069 2.6445 0.8846 34 1 4.6026 -2.7578 -1.0112 35 1 5.3541 -2.2880 0.5324 36 1 3.8366 -3.2182 0.5280 37 1 0.3818 -4.7468 0.1591 38 1 -0.4959 -4.2535 1.6301 39 1 2.2382 -5.6058 1.4836 40 1 0.7340 -6.2979 2.1385 41 1 -0.3124 -5.5220 4.1143 42 1 -0.0073 -3.7666 4.4643 43 1 4.2200 -6.4709 7.3432 44 1 3.2812 -5.6133 4.5419 45 1 1.9541 -6.7948 4.1678 46 1 2.5118 -3.0396 4.2817 47 1 3.3342 -3.5992 2.8041 48 1 2.1266 -1.5551 2.2591 49 1 0.6291 -2.1950 2.9843 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035857189.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:03 Heat of formation + Delta-G solvation = 17.712930 kcal Electronic energy + Delta-G solvation = -31564.364020 eV Core-core repulsion = 27493.596808 eV Total energy + Delta-G solvation = -4070.767211 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.33655 -40.06148 -38.82981 -37.37197 -35.83422 -34.58164 -32.70484 -32.13176 -30.94518 -30.42563 -28.36599 -28.05759 -26.86901 -24.99406 -24.34201 -23.29063 -23.05074 -21.59984 -21.35251 -19.93756 -18.67771 -18.15209 -17.46588 -16.86031 -16.72232 -16.37640 -15.86421 -14.94787 -14.90583 -14.71216 -14.48689 -14.32220 -13.91132 -13.82404 -13.72298 -13.57746 -13.37626 -13.31788 -12.86400 -12.69072 -12.51931 -12.38716 -12.29378 -12.18622 -12.10592 -11.88056 -11.72848 -11.12345 -11.07495 -10.91772 -10.86571 -10.46950 -10.32797 -10.18514 -9.81318 -9.76265 -9.65472 -9.59708 -9.25520 -9.01443 -8.83137 -8.51915 -6.89891 -5.79833 -3.11840 0.51484 0.85758 2.42727 2.85118 3.15887 3.35835 3.40095 3.40765 3.42872 4.17419 4.19637 4.34096 4.42482 4.73177 4.86232 4.93959 4.98806 5.00885 5.10632 5.20659 5.23946 5.26423 5.29457 5.36076 5.43434 5.46243 5.57304 5.57653 5.60043 5.71697 5.76948 5.80281 5.85388 5.89689 5.93860 6.09533 6.16241 6.23090 6.30225 6.44090 6.53892 6.57613 6.75101 6.77945 7.14876 7.19173 7.31598 7.33207 7.53642 7.61418 7.94846 8.03296 9.00856 9.67608 10.62244 11.37455 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013362 B = 0.003092 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.042281 B = 9052.487342 C = 9928.835318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.009 3.991 3 C -0.196 4.196 4 C 0.330 3.670 5 O -0.482 6.482 6 N -0.505 5.505 7 C 0.197 3.803 8 C -0.114 4.114 9 C -0.184 4.184 10 C 0.573 3.427 11 O -0.537 6.537 12 N -0.595 5.595 13 C 0.114 3.886 14 C -0.114 4.114 15 C -0.115 4.115 16 C 0.128 3.872 17 N -0.608 5.608 18 C -0.218 4.218 19 H 0.079 0.921 20 C -0.006 4.006 21 N -0.919 5.919 22 Si 0.910 3.090 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.167 3.833 27 C -0.093 4.093 28 C 0.110 3.890 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.146 0.854 33 H 0.403 0.597 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.076 0.924 41 H 0.031 0.969 42 H 0.035 0.965 43 H 0.253 0.747 44 H 0.070 0.930 45 H 0.024 0.976 46 H 0.089 0.911 47 H 0.062 0.938 48 H 0.074 0.926 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.647 12.761 -13.850 19.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.001 3.999 3 C -0.217 4.217 4 C 0.151 3.849 5 O -0.289 6.289 6 N -0.225 5.225 7 C 0.058 3.942 8 C -0.171 4.171 9 C -0.189 4.189 10 C 0.359 3.641 11 O -0.415 6.415 12 N -0.327 5.327 13 C -0.008 4.008 14 C -0.153 4.153 15 C -0.117 4.117 16 C 0.001 3.999 17 N -0.333 5.333 18 C -0.345 4.345 19 H 0.097 0.903 20 C -0.203 4.203 21 N -0.566 5.566 22 Si 0.740 3.260 23 H -0.217 1.217 24 H -0.216 1.216 25 H -0.206 1.206 26 C 0.041 3.959 27 C -0.132 4.132 28 C -0.013 4.013 29 H 0.104 0.896 30 H 0.098 0.902 31 H 0.096 0.904 32 H 0.163 0.837 33 H 0.262 0.738 34 H 0.105 0.895 35 H 0.106 0.894 36 H 0.100 0.900 37 H 0.108 0.892 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.094 0.906 41 H 0.048 0.952 42 H 0.054 0.946 43 H 0.063 0.937 44 H 0.088 0.912 45 H 0.042 0.958 46 H 0.108 0.892 47 H 0.080 0.920 48 H 0.093 0.907 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.796 12.473 -14.630 19.428 hybrid contribution -0.694 0.164 1.670 1.815 sum -3.490 12.637 -12.961 18.435 Atomic orbital electron populations 1.20934 0.89344 1.04129 1.03613 1.20180 0.96951 0.90830 0.91953 1.21852 0.93731 0.99289 1.06872 1.19237 0.87025 0.85063 0.93532 1.84716 1.76004 1.34043 1.34165 1.67002 1.41833 0.97807 1.15824 1.21054 0.89100 0.93195 0.90852 1.20903 1.00682 0.91554 1.03965 1.20654 0.94922 0.94423 1.08943 1.17902 0.78405 0.83921 0.83851 1.90796 1.54851 1.64861 1.30957 1.48145 1.56824 1.22020 1.05678 1.21693 0.95012 0.82339 1.01748 1.21738 1.00211 0.97746 0.95588 1.22084 0.99575 0.97128 0.92887 1.22393 0.92473 0.97222 0.87783 1.45567 1.21436 1.64597 1.01737 1.18904 1.04990 1.30524 0.80070 0.90302 1.24765 0.97189 1.00446 0.97919 1.69826 1.11024 1.41535 1.34168 0.86159 0.76921 0.77743 0.85172 1.21656 1.21632 1.20650 1.22032 0.97813 0.92417 0.83624 1.21412 0.97333 0.93836 1.00574 1.21838 1.00057 0.95930 0.83442 0.89628 0.90245 0.90424 0.83660 0.73814 0.89509 0.89407 0.89986 0.89234 0.91191 0.91699 0.90566 0.95195 0.94645 0.93676 0.91177 0.95832 0.89246 0.91971 0.90730 0.90913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.03 9.69 36.00 0.35 -0.68 16 2 C 0.01 0.09 5.95 -103.96 -0.62 -0.53 16 3 C -0.20 -1.87 9.72 -39.34 -0.38 -2.26 16 4 C 0.33 3.68 7.74 -16.96 -0.13 3.55 16 5 O -0.48 -4.44 13.55 -18.17 -0.25 -4.69 16 6 N -0.50 -6.58 10.28 -9.20 -0.09 -6.68 16 7 C 0.20 2.51 6.69 -82.18 -0.55 1.96 16 8 C -0.11 -1.31 9.78 36.01 0.35 -0.96 16 9 C -0.18 -2.30 3.62 -104.82 -0.38 -2.68 16 10 C 0.57 7.78 4.20 -12.43 -0.05 7.73 16 11 O -0.54 -8.85 16.49 5.30 0.09 -8.77 16 12 N -0.59 -7.48 2.94 -173.85 -0.51 -7.99 16 13 C 0.11 1.41 6.35 -3.64 -0.02 1.39 16 14 C -0.11 -1.56 5.30 -26.78 -0.14 -1.70 16 15 C -0.12 -1.92 0.84 -155.02 -0.13 -2.05 16 16 C 0.13 2.40 7.63 -8.21 -0.06 2.33 16 17 N -0.61 -14.70 3.55 -184.66 -0.66 -15.35 16 18 C -0.22 -5.87 10.74 -15.06 -0.16 -6.03 16 19 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 20 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 21 N -0.92 -26.51 11.52 55.49 0.64 -25.87 16 22 Si 0.91 21.58 29.55 -169.99 -5.02 16.56 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 C 0.17 3.68 6.54 -8.22 -0.05 3.63 16 27 C -0.09 -1.43 5.27 -26.80 -0.14 -1.57 16 28 C 0.11 1.36 6.24 -3.67 -0.02 1.34 16 29 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.08 0.51 8.10 -51.93 -0.42 0.09 16 31 H 0.08 0.77 7.18 -51.93 -0.37 0.39 16 32 H 0.15 1.00 8.06 -52.48 -0.42 0.57 16 33 H 0.40 1.69 9.06 45.56 0.41 2.10 16 34 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.08 0.98 6.92 -51.93 -0.36 0.62 16 37 H 0.09 1.14 6.97 -51.93 -0.36 0.78 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 41 H 0.03 0.56 8.06 -51.93 -0.42 0.14 16 42 H 0.04 0.63 7.53 -51.93 -0.39 0.24 16 43 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 44 H 0.07 1.74 7.11 -51.93 -0.37 1.37 16 45 H 0.02 0.54 8.09 -51.93 -0.42 0.12 16 46 H 0.09 1.61 7.95 -51.93 -0.41 1.20 16 47 H 0.06 0.93 8.00 -51.93 -0.42 0.52 16 48 H 0.07 0.87 6.19 -51.93 -0.32 0.55 16 49 H 0.07 0.87 7.60 -51.93 -0.39 0.48 16 LS Contribution 392.77 15.07 5.92 5.92 Total: -1.00 -33.60 392.77 -8.88 -42.48 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -6.75 Total: 1.19 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: -2.25 Total: 3.20 kcal Atomic # 7 Polarization: -55.27 SS G_CDS: -0.62 Total: -55.89 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: -0.16 Total: -13.46 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.60 -8.88 -42.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035857189.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.189 kcal (2) G-P(sol) polarization free energy of solvation -33.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds